Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq718 170 4e-37 seq135 165 2e-35 seq4581 89.7 1e-12 seq620 84.2 5e-11 >seq718 Length=674 Score = 170 bits (188), Expect = 4e-37 Identities = 169/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||||| ||| || | || | |||||| |||||||| ||||| |||||| ||||||| Sbjct 264 GAGTCGCAACACCAAATGCAAAGTGGATTCTTTTTGGATATTATAATCGCTGAGAGTTCG 205 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| | || ||||| ||||| || | |||||||| ||||||||||| ||||| Sbjct 204 ACCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATACCTTC 145 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 ||||||||||||||| ||||| || ||||| || || ||| || ||||| | || Sbjct 144 TTTGTCTTGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGCTCAACTTCCAAAGT 85 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || ||||| ||||||||||| ||||| | ||||| Sbjct 84 AATGGTTTTTCCAGTCAAAGTTTTCACGAAAATCTGCAT 46 Score = 134 bits (148), Expect = 3e-26 Identities = 166/226 (73%), Gaps = 7/226 (3%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTC- 194980 ||| | ||| || | ||| | ||| || |||||||| ||||| |||||| ||||||| Sbjct 499 GAGACGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTGAGAGTTCN 440 Query 194981 ----TC--CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAA 195034 || |||||||| | || || || ||||| || | |||||||| ||||| |||| Sbjct 439 GAGTTCGACCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAA 380 Query 195035 TGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTT 195094 | ||||||||||| || ||||| ||||| || ||||| || || ||| ||| |||| Sbjct 379 TACCTTCTTTGTCCTGTATTTTAGCTTTGACATTTTCAATTGTATCGGAAGGTTCAACTT 320 Query 195095 CAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | | || | || ||||| ||||||||||| ||||| | ||||| Sbjct 319 CCAAAGTGATTGTTTTTCCAGTCAAAGTTTTAACGAAAATCTGCAT 274 Score = 120 bits (132), Expect = 7e-22 Identities = 126/166 (76%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 194975 GAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAA 195034 |||||| |||||||| | || || || ||||| || | |||||||| ||||| |||| Sbjct 674 GAGTTCGACCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAA 615 Query 195035 TGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTT 195094 | |||||||| ||||||||||| ||||| || ||||| || || ||| || |||| Sbjct 614 TACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGCTCAACTT 555 Query 195095 CAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | | || | || ||||| ||||||||||| ||||| | |||||| Sbjct 554 CCAAAGTGATAGTTTTTCCAGTCAAAGTTTTCACGAAAATTTGCAT 509 >seq135 Length=1279 Score = 165 bits (182), Expect = 2e-35 Identities = 168/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | ||| || | ||| | ||| || |||||||| ||||| |||||| ||||||| Sbjct 650 GAGACGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTGAGAGTTCG 591 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| | || || || || || || || ||||| || ||||||||||| ||||| Sbjct 590 ACCATCTTCCAATTGTTTGCCAGCAAAAATCAGACGTTGCTGATCTGGAGGAATACCTTC 531 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 ||| ||||||||||| ||||| || |||||||| || ||| ||||||||| | || Sbjct 530 TTTATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCCACTTCCAAAGT 471 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||||||| ||||||||||| || || | ||||| Sbjct 470 AATGGTCTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 432 Score = 161 bits (178), Expect = 2e-34 Identities = 167/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | ||| || | ||| | |||||| ||||||||||||||||||||| | ||||| Sbjct 878 GAGACGCAATACCAAGTGTAAAGTGGATTCTTTTTGAATATTGTAATCGCTCAATGTTCT 819 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| | || || || || || || | |||||||| ||||| ||||| ||||| Sbjct 818 ACCATCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTC 759 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 ||| ||||||||||| ||||| || |||||||| || ||| ||| ||||| | || Sbjct 758 TTTATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCAACTTCCAAAGT 699 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || ||||| ||||| ||||| ||||| | ||||| Sbjct 698 AATGGTTTTTCCAGTCAATGTTTTAACGAAAATCTGCAT 660 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | ||| || | ||| | |||||| |||||||| ||||| |||||| ||||||| Sbjct 422 GAGACGCAACACCAAGTGTAAAGTGGATTCTTTTTGGATATTATAATCGCTGAGAGTTCG 363 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| | || ||||| || || || | |||||||| ||||| ||||| ||||| Sbjct 362 ACCATCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTC 303 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 |||||| || ||||| ||||| || ||||| || || ||| ||| ||||| | || Sbjct 302 TTTGTCCTGTATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGT 243 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || ||||| ||||| ||||| ||||| | ||||| Sbjct 242 GATTGTTTTTCCAGTCAATGTTTTCACGAAAATCTGCAT 204 Score = 140 bits (154), Expect = 7e-28 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||||| ||| || | || | |||||| ||||| || |||||||||||| | ||||| Sbjct 194 GAGTCGCAACACCAAATGCAAAGTGGATTCTTTCTGGATATTGTAATCGCTCAATGTTCT 135 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| | || ||||| ||||| || | |||||||| ||||| ||||| ||||| Sbjct 134 ACCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTC 75 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 ||||||||||||||| ||||| || ||||| || || ||| ||||||||| | || Sbjct 74 TTTGTCTTGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGTTCCACTTCCAAAGT 15 Query 195102 AACCGTCTTTCC 195113 | || ||||| Sbjct 14 GATAGTTTTTCC 3 Score = 87.8 bits (96), Expect = 4e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 195028 GGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT 195087 |||||||| ||||||||||| || ||||| || ||||| ||||| || || ||| Sbjct 1279 GGAGGAATTCCTTCTTTGTCATGGATTTTAGCTTTAACGTTTTCAATTGTATCGGAAGGC 1220 Query 195088 TCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| | |||| || ||||| ||||||||||| ||||| | |||||| Sbjct 1219 TCAACTTCCAAAGTAATAGTTTTTCCAGTCAAAGTTTTCACGAAAATTTGCAT 1167 >seq4581 Length=275 Score = 89.7 bits (98), Expect = 1e-12 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||| || ||||| ||||| || |||||| | ||||| |||||||| | || || || Sbjct 150 AGTTGATTCTTTCTGAATGTTATAATCGCTCAATGTTCTACCATCTTCCAATTGTTTGCC 209 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || || || ||||| || ||||||||||| |||||||| ||||| ||||| Sbjct 210 AGCAAAAATTAGACGTTGCTGATCTGGAGGAATACCTTCTTTATCTTGGATTTT 263 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 195037 CCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCA 195096 ||||||||||| || ||||| |||||||| ||||| || || ||| ||| ||||| Sbjct 16 CCTTCTTTGTCCTGTATTTTAGCTTTGACGTTTTCAATCGTATCGGAAGGTTCAACTTCC 75 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| |||||||| ||||||||||| || || | ||||| Sbjct 76 AAGGTAATGGTCTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 119 >seq620 Length=8710 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 195037 CCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCA 195096 ||||||||||||||||| || |||||||| ||||| || || ||| ||||||||| Sbjct 8389 CCTTCTTTGTCTTGAATCTTAGCTTTGACGTTTTCAATTGTATCGGAAGGTTCCACTTCC 8330 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || | || ||||| ||||||||||| || || | |||||| Sbjct 8329 AAAGTGATAGTTTTTCCAGTCAAAGTTTTAACAAAAATTTGCAT 8286 Score = 84.2 bits (92), Expect = 5e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 195032 GAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCA 195091 |||| |||||||| ||||||||||| ||||| || |||||||| || ||| ||||| Sbjct 8710 GAATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCCA 8651 Query 195092 CTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| | || | || ||||| ||||||||||| || || | ||||| Sbjct 8650 CTTCCAAAGTGATAGTTTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 8602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109213500705620