Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq4298 394 1e-104 seq10223 385 5e-102 >seq4298 Length=5336 Score = 394 bits (436), Expect = 1e-104 Identities = 639/909 (70%), Gaps = 14/909 (2%) Strand=Plus/Minus Query 18659 TTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTA 18718 |||| || ||||||||||||| ||||| | |||||| || ||||||||||| ||||| | Sbjct 2297 TTACACCACTTTTTTGATATTCTGCAACACGTTTTTCGAAAAAATTAGTTTTACCCTCCA 2238 Query 18719 ATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGA-ATCCT 18777 | || || |||||| ||| |||||||||||| ||| || | ||| | |||| Sbjct 2237 AAGAGATCTGTTCCATGAAAGAGAATGGATTTTTTGTATTGTAAAATTTGCCAACATCC- 2179 Query 18778 AATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTC 18837 | || | | | | ||| || ||| || || |||||| | | ||| Sbjct 2178 AGCTCGACCAACAAACGATCAGCGCAGTATTCGATGTACTCACTCATCAAAGTGCTATTG 2119 Query 18838 ATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCC 18897 ||||| || || ||||| | || || || | ||||||||| || || | || || Sbjct 2118 ATTCCGATCAAGGAGACAGGCAAGGCGTCGGTCAAAAATTCTTGCTCAATCTCGACCGCT 2059 Query 18898 TCTGATATAATAGATACAACTCTATCTTCATTAG-GAGGGT--ATAGAAGATGTTTA--A 18952 | | | ||| | ||| ||||||| | || ||| || || ||||| | | Sbjct 2058 TTGGTGACAATC--TTCAAG---ATCTTCACCCGAGAAGGTCGATTGACGATGTGTCGGA 2004 Query 18953 ACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAA 19012 | | |||||| |||||||||||||| ||||| || || | |||||||||||| | Sbjct 2003 AAAGCAAACAAGCAAAATCACAATGAAGTCCTTCATCACGCGAGATCAATTCATTACTGA 1944 Query 19013 ATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAG 19072 | || || |||||||||||||||| |||||| | ||| || |||| ||||| || |||| Sbjct 1943 AAGTCAAGCCAGGCATCAGTCCTCGTTTTTTAAGCCAAAAGATAGCCGCAAACGAGCCAG 1884 Query 19073 AAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCAT 19132 | || || || ||||| || || || || ||||| || | ||| || | ||| | || Sbjct 1883 AGAAAAAGATTCCTTCGACGGCAGCGAACGCAACAAGACGTTCAGCAAAGCTAACTCTAT 1824 Query 19133 TATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTA 19192 || ||| ||||| | | ||||| | || ||||| | ||||| |||| ||| | | Sbjct 1823 CATCTTGAGTCCATCTGATAGCCCATTTCGCTTTCTTCTCGACACAAGGCAATGTTTGAA 1764 Query 19193 TAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAAC 19252 | | ||| || ||| | | ||||| | ||||||| | ||| | || || | || Sbjct 1763 TGGCATTGAAAAGAAAATCTCTCTCATATTTATCTTTTATATAGGTATTGATGAGCAACG 1704 Query 19253 TGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTT 19312 |||||||| || ||||||||||| || || ||||||||||| |||||||||| || | Sbjct 1703 AATACATTTCAGAGTGAATATTTTCGATGGCGATCTGAAATCCATAAAAACATCGAGCCT 1644 Query 19313 CTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCAC 19372 ||| |||||| || |||| | || | || | | ||| ||||||||||||||||||| Sbjct 1643 CTGGTATCTGAACATCACGAATGAAACGCTCAGCTAGATTCTCATTAACTATTCCATCAC 1584 Query 19373 TAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCAT-CTGAGGTTAATGTA 19431 | || ||||| |||||||| ||||| || ||||||||||||| || | | || | Sbjct 1583 TTGCAGCAAAGAATGCTAACACATGAGAGATGAAATGTTTTTCATTCTTAT-TCAACGAG 1525 Query 19432 TTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCT 19491 ||||||| || | ||| | |||||| |||||||| ||||||||||| || ||||| Sbjct 1524 TTCCAATGATCTAGATCGCGACTTAAATCGACTTCTTCGACTGTCCAAAACGATGCCTCC 1465 Query 19492 GCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTT 19551 ||||| || ||||| | ||| ||||| ||||| || ||||| | |||||||| ||| Sbjct 1464 GCTTTCTTGTACATCTCCCAGATATCTTTGTATTGAATTGGAAACAAAACAAATCGATTC 1405 Query 19552 TTATTTTCT 19560 ||||||| Sbjct 1404 GGATTTTCT 1396 >seq10223 Length=44262 Score = 385 bits (426), Expect = 5e-102 Identities = 1134/1744 (65%), Gaps = 57/1744 (3%) Strand=Plus/Plus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 |||||||| || |||| ||||| || |||| || || || |||||||| | ||| Sbjct 20293 TGAAATTCGCCTGATAAAACTCTCCGATTATAAATGTTGGAAGTGTATGGTTCAAATGAT 20352 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 ||||| ||||| || |||||||| || ||||| || ||||| | ||||||| | ||| Sbjct 20353 TCATTGTTTCCTAAGATTTGAGCTGTCGATGCGGTCGGCATCGGAGCAACTAGAAGACTA 20412 Query 47448 TTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGAT 47507 |||| || || ||||| || | || ||||||||| ||||| | Sbjct 20413 TTTCGTAGACCGTATTTAGCAATATTTTCTTTCAATTTTTCCCAATCCCAGAGATCGGTA 20472 Query 47508 GGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATAT 47567 || || ||| | ||| ||||| ||||| ||||| | ||||| || | ||| Sbjct 20473 GGTTTGCGATCCCACATATCGTATTGGAGAATACCTTTCGATGCGGGAGATCCTTCATAG 20532 Query 47568 GTTTTATAAGGACCGT--ATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAAT 47625 |||| |||||| || | |||| ||| | |||||| || || || ||||| | |||| Sbjct 20533 GTTTCATAAGGTCCATGGATAGC--AGCTAATTCACAGCTAGCCTCTAATGCTCCGTAAT 20590 Query 47626 ATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGA--TTCAAAAGGATA 47683 | |||||||| || |||| ||| || | || | ||||| || | |||||||||||| Sbjct 20591 AGATTGTTTCGAAAATTTGTATATTCAATTTTTTCGCTTC--ATCACTTTCAAAAGGATA 20648 Query 47684 NNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGT 47743 || | ||| || | ||||| || || || ||||| ||||| || Sbjct 20649 TCTAAGCAAAATGAACGCATCAGCTAGACCTTGTACGCCGATTCCAATCGGTCTGTGTCG 20708 Query 47744 TTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAG 47803 |||| ||| |||||| || || ||||| | |||| ||| || ||||| || | Sbjct 20709 CATATTTGAACGACGAGCTTCCGGCAAGGGATAATAATTTACATCAATTATTTTGTTCAA 20768 Query 47804 ANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATC-----AAACTTGTTA 47858 | | || | | | || | |||||| | | | || Sbjct 20769 ATTTTTCGTCATAACTTTGATGATGTTTTTCAACTCTCCAAAATCGTAGGATAGATTTTT 20828 Query 47859 TTTATA-ACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGG 47917 || || ||||| | | || | || ||||||||||| ||||||| || | ||| Sbjct 20829 TTGATTGACAAATTTTGGTAACGCAACCGAAGCTAGATTACAAACAGCTATTTCGTCTGG 20888 Query 47918 ATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTG 47977 | ||||| | || || | || |||||| |||||||| || || | ||||| Sbjct 20889 CGATGAATATTCAACAATCTCGGTGCAAAGATTAGAGCATTTGATGGTGCCAAGATTTTT 20948 Query 47978 ATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTAT 48037 |||||| | ||||| || ||||| | ||| || |||||||| ||||| | Sbjct 20949 TTGATTAGATTTTCTATTACAATGATCTTTGTAGACCATGAATGGTGTTCCGGTTTCCAC 21008 Query 48038 CTGAGATTCAATGATAGATTTCCAAA---CA-GTCCTAGCCTTTATAACAGCTCTAGCTT 48093 ||||| || | || | ||||| || | || | ||| | | | | | Sbjct 21009 CTGAGCATCGACTATTGCGAACCAAAGTTCACGAGCTGGAATTTGTTTGCGATATCG--- 21065 Query 48094 TATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTA 48153 ||| || | || ||||| ||| | || ||||| || || | |||| | | Sbjct 21066 -ATTCTCTTTCTCATATTTCTCATAGAGAGCTTCGAATTCTTCGCCCCAAACATCTTGCA 21124 Query 48154 ACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCA 48213 | ||||||||||| || || |||||||| |||||| || |||| ||| | ||| Sbjct 21125 ATCCAGGACATTCTTTGGGGCACATCAACGACCAAACCCCATCGGTTTCGCAACGTTTCA 21184 Query 48214 TAAATATATCTGGTATCCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTG 48272 | || | ||| |||||||| | || ||| || | ||| || | | || |||||| | Sbjct 21185 TGAACAAATCCGGTATCCATAATGC-ATAGAAAAGATCTCTGGCACGTAATTCTTCTGAG 21243 Query 48273 CCACTA-TTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATA 48331 ||| || ||| ||| || || || |||||| | ||||| |||||||| ||||| ||||| Sbjct 21244 CCAGTATTTCGTTTCAAATTTAA-AAAGTCGAAAATATCTGCATGCCACGGTTCCAAATA 21302 Query 48332 TATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTT 48391 |||||| | |||| || || |||||||| |||||||| | ||| | || |||| ||| Sbjct 21303 TATTGCGAAAGCACCAGGACGCTTATTACCACCTTGATCGACATAACGAGCGGTATCGTT 21362 Query 48392 ATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACT 48451 ||||||| ||||| || || | ||||||||| ||| ||||| || || || Sbjct 21363 GTAAACTCGCAACATCGGAACCAAACCATTTGAATGACCTTTGGTGCCAACTATGTACGA 21422 Query 48452 TCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAG 48511 |||| | |||| ||| | || || ||| || ||||| || || ||||| | Sbjct 21423 TCCATTTGCTCGAATACAATGAACATTAAGACCGATGCCACCGGCTGACTTCGATATAAT 21482 Query 48512 AGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAG 48571 |||||| |||| | ||||| ||||| ||||| ||||||||||| ||| | |||| Sbjct 21483 AGCACATTGTTTCAACGTATCGTAAATACCTTCAATACTATCATCGGCCATCGTCAATAA 21542 Query 48572 AAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATG 48631 |||||| ||||||||| ||||| || || |||||||| || || || || || || Sbjct 21543 AAAACATGAAGACATTTGAGGATGGGTTGTACCAGAATTAAACAAAGTAGGTGAGGCGTG 21602 Query 48632 AATAAACCATTTCTCT-GATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATT 48690 |||| | || | || | | ||||| || || || | ||||| ||||| || Sbjct 21603 TGTAAA-AAGACCTTTAGACATTAGATTATACGTCTCGATGGCCGAATCAATATCTTCTT 21661 Query 48691 GATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTAT 48750 ||||||||| || | || | ||| ||||||| || |||||||| |||| ||| || Sbjct 21662 TATGTATACCGATGGCGACTCTCATCAACATATGCTGTGGTCTTTCGACAACTTTCCCAT 21721 Query 48751 TTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGT 48810 | | | || ||||| | | || ||||| ||||||||||| ||||| ||| | Sbjct 21722 TCACTCGTAATAGATAGCTTCGTAATAAGGTTTTGAAACCAAAATAATTGTAACTAAAAT 21781 Query 48811 CGTTATCATTAATAATTGATGAATTTATTC---------TTTCC-TTATG--TTTATATA 48858 | ||||| ||| || | |||||| | | | ||| ||| | |||||| | Sbjct 21782 CTCGATCATAAATTATCGCTGAATTGAGACGATCAGAGTTATCCATTACGATTTTATAAA 21841 Query 48859 CTACATC-----------CATTACATTT---TTTGATATAATTGA-TTCCTTGTAAAGAT 48903 | |||| | || |||| | | | | || || | ||||| |||| Sbjct 21842 CATCATCGGCGATAATCGGAATAGATTTGCCTGTTTTCTCATCGACATAATTGTAGAGAT 21901 Query 48904 CTTCTACAACATCACTAAATAttttttttGTTTCTTTATGAAGATTAGATATAGATATTC 48963 | | | ||||| || |||| || || ||||| || |||||||| ||||| |||| Sbjct 21902 CATGAATGACATCTGAGAAATTTTTCTTCGTCTCTTTTTGTAGATTAGAAATAGAGATTC 21961 Query 48964 TAGCAGCTAATATAGCATAATCTGGATGAATTGTTGTACAT-GTACTAGATATTTCTGCT 49022 |||||| | | ||||||||| | ||| |||||| ||| ||| || || || || Sbjct 21962 GAGCAGCGAGAACAGCATAATCGGTATGTTGTGTTGT-CATCGTAGCAGCGATCTCCGCA 22020 Query 49023 GCTA 49026 |||| Sbjct 22021 GCTA 22024 Score = 125 bits (138), Expect = 8e-24 Identities = 208/300 (69%), Gaps = 3/300 (1%) Strand=Plus/Plus Query 46973 TTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACC 47032 ||| |||||||| || | ||| | ||| ||||| | | || |||| ||||||||| || Sbjct 19862 TTTATCCACAGTGAATTGAATGGCATTGGCCGCTGGTCTAGTACGTAGATAATACATTCC 19921 Query 47033 AGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGG 47092 || || ||||| | ||| | |||||||||||| || | ||| | | ||| Sbjct 19922 CGTTTTCAAACCATTTCGCCAGCAATAGAAATGCATCGATGTCATTTTGGCCATAGTAGC 19981 Query 47093 TTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGC 47152 || | ||||||||||| | ||||||||| ||||| || || ||||| | ||| | || Sbjct 19982 CTCAGCGATATGAATATTCAAAGATTGACTTTGATCGATGAACGCACCACGATCTACAGC 20041 Query 47153 CATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTC 47212 ||| || |||| | || || |||||||| || || || || | | |||||| || Sbjct 20042 CATCTCACAAATTCTTTTCTGAGGGATCTCCCAAACGGTCTTGTAGAGTGCTTTAATTTC 20101 Query 47213 TTCTGG---GAGATTAGTATTTTGAATAGATCCTCCGTTTTCTATAATTTTGTTTTTTAA 47269 || ||| | || | ||||||| ||||| |||| || | || ||||| |||| || Sbjct 20102 TTTTGGAATAATATCAATATTTTGTATAGAACCTCGATTAGCAATGATTTTCATTTTCAA 20161 Score = 100 bits (110), Expect = 3e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 49095 GGATCTATATGATCCATATCCAGTCCATAACATAAtttttttATTCTAGATGTAATTTTA 49154 ||||| | || |||||||| || ||||| || | ||||| ||||| || || || ||| Sbjct 22154 GGATCGACATAATCCATATTCAAACCATAGCAAAGTTTTTGAATTCTCGAAGTGATCTTA 22213 Query 49155 TCAAACATTATATTCTCTTTACGACCGTCACGTTTTATAACAAACATCTTTAC 49207 || ||||| ||| | ||||||||||| |||||||||| ||||||||| || || Sbjct 22214 TCGAACATAATAGTTTCTTTACGACCATCACGTTTTAGAACAAACATTTTGAC 22266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561976282850400