Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10]
18,860 sequences; 56,262,437 total letters
Query= NC_016924.1
Length=185139
Score E
Sequences producing significant alignments: (Bits) Value
seq4298 279 6e-70
>seq4298
Length=5336
Score = 279 bits (308), Expect = 6e-70
Identities = 419/593 (71%), Gaps = 2/593 (0%)
Strand=Plus/Minus
Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232
||||| |||||||||||||| | |||||||| | |||||||||||| || ||
Sbjct 1998 AAACAAGCAAAATCACAATGAAGTCCTTCATCACGCGAGATCAATTCATTACTGAAAGTC 1939
Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAG 37292
|| || ||||| | |||| |||||||| |||||| || || ||||| || ||||| ||
Sbjct 1938 AAGCCAGGCATCAGTCCTCGTTTTTTAAGCCAAAAGATAGCCGCAAACGAGCCAGAGAAA 1879
Query 37293 AAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAA-CTATAATC 37351
|| || ||||| || || || || || ||||||||| | | |||| | | |||| |||
Sbjct 1878 AAGATTCCTTCGACGGCAGCGAACGCAACAAGACGTTCAGC-AAAGCTAACTCTATCATC 1820
Query 37352 AGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGC 37411
| ||||| | | | ||| | || || | ||||| | ||||| ||| ||
Sbjct 1819 TTGAGTCCATCTGATAGCCCATTTCGCTTTCTTCTCGACACAAGGCAATGTTTGAATGGC 1760
Query 37412 TTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATA 37471
|| || ||||| | | | || | ||||| ||||||| |||| || || || |||
Sbjct 1759 ATTGAAAAGAAAATCTCTCTCATATTTATCTTTTATATAGGTATTGATGAGCAACGAATA 1700
Query 37472 CATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGA 37531
||||||||||||||||||||| || || |||||||| ||||||||||| | ||| || |
Sbjct 1699 CATTTCAGAGTGAATATTTTCGATGGCGATCTGAAATCCATAAAAACATCGAGCCTCTGG 1640
Query 37532 TAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGC 37591
|| |||||||| || || | || ||||| || ||||||||||| |||||||| ||
Sbjct 1639 TATCTGAACATCACGAATGAAACGCTCAGCTAGATTCTCATTAACTATTCCATCACTTGC 1580
Query 37592 TGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCCA 37651
|||||||| || | |||| || |||||| |||||| || || |||||
Sbjct 1579 AGCAAAGAATGCTAACACATGAGAGATGAAATGTTTTTCATTCTTATTCAACGAGTTCCA 1520
Query 37652 ATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGCACG 37711
|| || | ||| |||||| ||||| || || |||||||| |||| ||
Sbjct 1519 ATGATCTAGATCGCGACTTAAATCGACTTCTTCGACTGTCCAAAACGATGCCTCCGCTTT 1460
Query 37712 TTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACAAATCTAT 37764
|| |||||| ||| ||||| || | ||| |||||||| | ||||||| ||
Sbjct 1459 CTTGTACATCTCCCAGATATCTTTGTATTGAATTGGAAACAAAACAAATCGAT 1407
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 592177161314400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |