Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq4298 279 6e-70 >seq4298 Length=5336 Score = 279 bits (308), Expect = 6e-70 Identities = 419/593 (71%), Gaps = 2/593 (0%) Strand=Plus/Minus Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232 ||||| |||||||||||||| | |||||||| | |||||||||||| || || Sbjct 1998 AAACAAGCAAAATCACAATGAAGTCCTTCATCACGCGAGATCAATTCATTACTGAAAGTC 1939 Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAG 37292 || || ||||| | |||| |||||||| |||||| || || ||||| || ||||| || Sbjct 1938 AAGCCAGGCATCAGTCCTCGTTTTTTAAGCCAAAAGATAGCCGCAAACGAGCCAGAGAAA 1879 Query 37293 AAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAA-CTATAATC 37351 || || ||||| || || || || || ||||||||| | | |||| | | |||| ||| Sbjct 1878 AAGATTCCTTCGACGGCAGCGAACGCAACAAGACGTTCAGC-AAAGCTAACTCTATCATC 1820 Query 37352 AGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGC 37411 | ||||| | | | ||| | || || | ||||| | ||||| ||| || Sbjct 1819 TTGAGTCCATCTGATAGCCCATTTCGCTTTCTTCTCGACACAAGGCAATGTTTGAATGGC 1760 Query 37412 TTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATA 37471 || || ||||| | | | || | ||||| ||||||| |||| || || || ||| Sbjct 1759 ATTGAAAAGAAAATCTCTCTCATATTTATCTTTTATATAGGTATTGATGAGCAACGAATA 1700 Query 37472 CATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGA 37531 ||||||||||||||||||||| || || |||||||| ||||||||||| | ||| || | Sbjct 1699 CATTTCAGAGTGAATATTTTCGATGGCGATCTGAAATCCATAAAAACATCGAGCCTCTGG 1640 Query 37532 TAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGC 37591 || |||||||| || || | || ||||| || ||||||||||| |||||||| || Sbjct 1639 TATCTGAACATCACGAATGAAACGCTCAGCTAGATTCTCATTAACTATTCCATCACTTGC 1580 Query 37592 TGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCCA 37651 |||||||| || | |||| || |||||| |||||| || || ||||| Sbjct 1579 AGCAAAGAATGCTAACACATGAGAGATGAAATGTTTTTCATTCTTATTCAACGAGTTCCA 1520 Query 37652 ATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGCACG 37711 || || | ||| |||||| ||||| || || |||||||| |||| || Sbjct 1519 ATGATCTAGATCGCGACTTAAATCGACTTCTTCGACTGTCCAAAACGATGCCTCCGCTTT 1460 Query 37712 TTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACAAATCTAT 37764 || |||||| ||| ||||| || | ||| |||||||| | ||||||| || Sbjct 1459 CTTGTACATCTCCCAGATATCTTTGTATTGAATTGGAAACAAAACAAATCGAT 1407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592177161314400