Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq135 168 5e-37 seq718 163 2e-35 seq4581 98.7 8e-16 seq620 98.7 8e-16 >seq135 Length=1279 Score = 168 bits (186), Expect = 5e-37 Identities = 167/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || || || | |||||||||||||| ||||| |||||| || ||||| | Sbjct 647 ACGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACC 588 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| |||||||| || || ||||| |||| ||| || ||||| || ||||| |||||||| Sbjct 587 ATCTTCCAATTGTTTGCCAGCAAAAATCAGACGTTGCTGATCTGGAGGAATACCTTCTTT 528 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 |||||||||||| ||| ||| |||| | || || || | ||||||||| | ||| | Sbjct 527 ATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCCACTTCCAAAGTAAT 468 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || || |||||||| ||||| |||||||| Sbjct 467 GGTCTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 432 Score = 167 bits (184), Expect = 2e-36 Identities = 167/217 (77%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || || || | || ||||||||||| |||||||||||| | ||||| | Sbjct 875 ACGCAATACCAAGTGTAAAGTGGATTCTTTTTGAATATTGTAATCGCTCAATGTTCTACC 816 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| |||||||| || || ||||| |||||||| |||||||| || ||||| |||||||| Sbjct 815 ATCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTT 756 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 |||||||||||| ||| ||| |||| | || || || | ||| ||||| | ||| | Sbjct 755 ATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCAACTTCCAAAGTAAT 696 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 ||||| || || || ||||| || || ||||||||| Sbjct 695 GGTTTTTCCAGTCAATGTTTTAACGAAAATCTGCATG 659 Score = 165 bits (182), Expect = 6e-36 Identities = 166/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || || || | || ||||||||||| ||||| |||||| || ||||| | Sbjct 419 ACGCAACACCAAGTGTAAAGTGGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACC 360 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| |||||||| ||||| ||||| |||||||| |||||||| || ||||| |||||||| Sbjct 359 ATCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTT 300 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 || || ||||| ||| ||| |||| | ||| || || | ||| ||||| | ||||| Sbjct 299 GTCCTGTATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGTGAT 240 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || || || ||||| || || |||||||| Sbjct 239 TGTTTTTCCAGTCAATGTTTTCACGAAAATCTGCAT 204 Score = 145 bits (160), Expect = 6e-30 Identities = 145/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA 101314 || || || ||||| | || |||||||| || |||||||||||| | ||||| || Sbjct 190 CGCAACACCAAATGCAAAGTGGATTCTTTCTGGATATTGTAATCGCTCAATGTTCTACCA 131 Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || |||||||| ||||| || || |||||||| |||||||| || ||||| |||||||| Sbjct 130 TCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTG 71 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 ||||||||||| ||| ||| |||| | || || || | ||||||||| | ||||| Sbjct 70 TCTTGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGTTCCACTTCCAAAGTGATA 11 Query 101435 GTTTTGCC 101442 ||||| || Sbjct 10 GTTTTTCC 3 Score = 102 bits (112), Expect = 6e-17 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA 101314 || || || ||||| | || |||||||| || |||||||||||| | |||||| || Sbjct 1153 CGCAACACCAAATGCAAAGTGGATTCTTTCTGGATATTGTAATCGCTCAATGTTCTGCCA 1094 Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCT 101368 || |||||||| ||||| ||||| |||||||| || ||||| |||||||| ||| Sbjct 1093 TCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGCTGATCTGGCGGAATACCT 1040 >seq718 Length=674 Score = 163 bits (180), Expect = 2e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA 101314 || || || ||||| | || ||||||||||| ||||| |||||| || ||||| || Sbjct 260 CGCAACACCAAATGCAAAGTGGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCA 201 Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || |||||||| ||||| || || |||||||| |||||||| || ||||| |||||||| Sbjct 200 TCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTG 141 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 ||||||||||| ||| ||| |||| | || || || | || ||||| | ||| | Sbjct 140 TCTTGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGCTCAACTTCCAAAGTAATG 81 Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || || |||||||| || || |||||||| Sbjct 80 GTTTTTCCAGTCAAAGTTTTCACGAAAATCTGCAT 46 Score = 149 bits (164), Expect = 5e-31 Identities = 166/223 (74%), Gaps = 7/223 (3%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTG-- 101311 ||| || || || || | |||||||||||||| ||||| |||||| || ||||| | Sbjct 496 ACGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTGAGAGTTCNGAG 437 Query 101312 -----GCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGC 101366 |||| |||||||| || || || || |||||||| |||||||| || ||||| | Sbjct 436 TTCGACCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATAC 377 Query 101367 CTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAA 101426 ||||||| || || ||||| ||| ||| |||| | || || || | ||| ||||| | Sbjct 376 CTTCTTTGTCCTGTATTTTAGCTTTGACATTTTCAATTGTATCGGAAGGTTCAACTTCCA 317 Query 101427 GAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| ||||| || || |||||||| || || |||||||| Sbjct 316 AAGTGATTGTTTTTCCAGTCAAAGTTTTAACGAAAATCTGCAT 274 Score = 131 bits (144), Expect = 1e-25 Identities = 128/165 (78%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 101305 AGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAAT 101364 ||||| |||| |||||||| || || || || |||||||| |||||||| || ||||| Sbjct 673 AGTTCGACCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAAT 614 Query 101365 GCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTC 101424 |||||||||||||||||||| ||| ||| |||| | ||| || || | || ||||| Sbjct 613 ACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGCTCAACTTC 554 Query 101425 AAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | ||||| ||||| || || |||||||| || || || ||||| Sbjct 553 CAAAGTGATAGTTTTTCCAGTCAAAGTTTTCACGAAAATTTGCAT 509 >seq4581 Length=275 Score = 98.7 bits (108), Expect = 8e-16 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || ||||| | || |||||||| || || || |||||| | ||||| | Sbjct 132 ACGCAATACCAAATGCAAAGTTGATTCTTTCTGAATGTTATAATCGCTCAATGTTCTACC 191 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| |||||||| || || ||||| || | ||| || ||||| || ||||| |||||||| Sbjct 192 ATCTTCCAATTGTTTGCCAGCAAAAATTAGACGTTGCTGATCTGGAGGAATACCTTCTTT 251 Query 101374 ATCTTGAATTTT 101385 |||||| ||||| Sbjct 252 ATCTTGGATTTT 263 >seq620 Length=8710 Score = 98.7 bits (108), Expect = 8e-16 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| |||||||||||||||||||| ||| ||| |||| | || || || | ||||| Sbjct 8710 GAATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCCA 8651 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||| | ||||| ||||| || || |||||||| ||||| |||||||| Sbjct 8650 CTTCCAAAGTGATAGTTTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 8602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396187312933020