Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq4298 111 3e-19 >seq4298 Length=5336 Score = 111 bits (122), Expect = 3e-19 Identities = 243/356 (68%), Gaps = 6/356 (2%) Strand=Plus/Plus Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656 ||||| ||||||||||| || |||||| ||||| || |||||||| ||| | ||| Sbjct 1562 GTGTTAGCATTCTTTGCTGCAAGTGATGGAATAGTTAATGAGAATCTAGCTGAGCGTTTC 1621 Query 25657 ACCAGGGAAGTGCAG-TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGA 25715 | | || || ||| ||| | |||| ||||| || || || ||||| |||||||| Sbjct 1622 ATTCGTGATGTTCAGATACCAG-AGGCTCGATGTTTTTATGGATTTCAGATCGCCATCGA 1680 Query 25716 AAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCGA 25775 |||| | |||||||| ||||| | ||| | | || || || | ||| || Sbjct 1681 AAATATTCACTCTGAAATGTATTCGTTGCTCATCAATACCTATATAAAAGATAAATATGA 1740 Query 25776 GAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCA-GCATCAAGAGGAAGGCGCGGT 25834 ||||||| || || |||||| | |||| || | || ||| ||| ||| | Sbjct 1741 GAGAGATTTTCTTTTCAATGCCATTCAA-ACATTGCCTTGTGTCGAGAAGAAAGCGAAAT 1799 Query 25835 GGGCCATGAAGTGGA-TCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTT 25893 |||| || | |||| |||| | | || | || |||| || || || || || || Sbjct 1800 GGGCTATCAGATGGACTCAAGATG-ATAGAGTTAGCTTTGCTGAACGTCTTGTTGCGTTC 1858 Query 25894 GCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAA 25949 ||||| || || || ||||||||| || ||||||||||| ||||| ||||| || Sbjct 1859 GCTGCCGTCGAAGGAATCTTTTTCTCTGGCTCGTTTGCGGCTATCTTTTGGCTTAA 1914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928625824838400