Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq135 120 3e-22 seq718 104 2e-17 seq4581 96.9 3e-15 >seq135 Length=1279 Score = 120 bits (132), Expect = 3e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| ||||| || || || || |||||||| ||| ||||||||| Sbjct 432 ATGCAGATTTTTGTCAAAACTTTGACTGGAAAGACCATTACTTTGGAAGTGGAACCTTCC 491 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || |||| || |||| || || ||||| || | || |||||| Sbjct 492 GATACCATTGAAAATGTCAAAGCTAAAATTCAA-GATAAAGAAGGTATTCCTCCAGATCA 550 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 || | || || ||||| |||||||||||||||||| | |||| | ||||||||| Sbjct 551 GCAACGTCTGATTTTTGCTGGCAAACAATTGGAAGATGGTCGAACTCTCAGCGATTATAA 610 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 || ||||||||||||||| ||||| |||| || Sbjct 611 TATCCAAAAAGAATCTACTTTGCACTTGGTGTT 643 Score = 120 bits (132), Expect = 3e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || || |||||||| || || ||||||||||| ||| |||||||| Sbjct 660 ATGCAGATTTTCGTTAAAACATTGACTGGAAAAACCATTACTTTGGAAGTTGAACCTTCC 719 Query 28614 GAGACGGTGGCCGATCTC-AAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || || |||| |||| || || ||||| || | || |||||| Sbjct 720 GATACCATTGAAAATGTCAAAGCTAAAATTC-AAGATAAAGAAGGTATTCCACCAGATCA 778 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| | | || ||||| |||||||||||||||||| || ||| || |||||| || Sbjct 779 ACAACGTTTGATTTTTGCTGGCAAACAATTGGAAGATGGTAGAACATTGAGCGATTACAA 838 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 |||||||||||||| ||| | ||| ||||||| Sbjct 839 TATTCAAAAAGAATCCACTTTACACTTGGTATT 871 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || || |||||||| || || ||||| || || ||| |||||||| Sbjct 204 ATGCAGATTTTCGTGAAAACATTGACTGGAAAAACAATCACTTTGGAAGTTGAACCTTCC 263 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || |||| ||||| |||||||| || | || ||||||| Sbjct 264 GATACTATTGAAAATGTCAAAGCTAAAATACAGGACAAAGAAGGTATTCCACCAGATCAA 323 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | | || ||||| || ||||||||||||||| | |||| | ||||||||| Sbjct 324 CAACGTTTGATTTTTGCTGGTAAACAATTGGAAGATGGTCGAACTCTCAGCGATTATAAT 383 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 || ||||||||||| ||| | ||| |||| || Sbjct 384 ATCCAAAAAGAATCCACTTTACACTTGGTGTT 415 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 28581 GGTAAAACCATTACCGCCGAAACGGAACCTTCAGAGACGGTGGCCGATCTCAA-GCAAAA 28639 || ||||| || || ||| ||||||||| || ||| | | || |||| || ||| Sbjct 3 GGAAAAACTATCACTTTGGAAGTGGAACCTTCCGATACGATTGAAAATGTCAAAGCTAAA 62 Query 28640 AATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACA 28699 | || |||||||| || | || ||||||||| | | || || || || ||||| Sbjct 63 ATTCAA-GACAAAGAAGGTATTCCACCAGATCAACAACGTTTGATTTTCGCTGGTAAACA 121 Query 28700 ATTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACAT 28759 |||||||||| || ||| || |||||| || || || |||||||| ||| |||| | Sbjct 122 ATTGGAAGATGGTAGAACATTGAGCGATTACAATATCCAGAAAGAATCCACTTTGCATTT 181 Query 28760 GGTATTAAGATTACGAGGAGGGAT 28783 ||| || || | || || || || Sbjct 182 GGTGTTGCGACTCCGTGGTGGTAT 205 >seq718 Length=674 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || || ||||| || || || ||||||||||| ||| || ||||| Sbjct 46 ATGCAGATTTTCGTGAAAACTTTGACTGGAAAAACCATTACTTTGGAAGTTGAGCCTTCC 105 Query 28614 GAGACGGTGGCCGATCTC-AAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || ||| | | || || |||| |||| || |||||||| || | || |||||| Sbjct 106 GATACGATTGAAAATGTCAAAGCTAAAATTC-AAGACAAAGAAGGTATTCCTCCAGATCA 164 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| | | || || || || ||||||||||||||| | |||| | ||||||||| Sbjct 165 ACAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGTCGAACTCTCAGCGATTATAA 224 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || ||||||||||| ||| |||| |||| || || | || || || || Sbjct 225 TATCCAAAAAGAATCCACTTTGCATTTGGTGTTGCGACTCCGTGGTGGTAT 275 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/219 (70%), Gaps = 7/219 (3%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || || ||||| || || || ||||| || || ||| |||||||| Sbjct 274 ATGCAGATTTTCGTTAAAACTTTGACTGGAAAAACAATCACTTTGGAAGTTGAACCTTCC 333 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || |||| ||||| |||||||| || | || ||||||| Sbjct 334 GATACAATTGAAAATGTCAAAGCTAAAATACAGGACAAAGAAGGTATTCCACCAGATCAA 393 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAA-----AACTATGGCCGA 28726 || | | || || || |||||||||||||||||| || || |||| | ||| Sbjct 394 CAACGTTTGATTTTCGCTGGCAAACAATTGGAAGATGGTCGAACTCNGAACTCTCAGCGA 453 Query 28727 TTATAACATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 |||||| || ||||||||||||||| ||||| |||| || Sbjct 454 TTATAATATCCAAAAAGAATCTACTTTGCACTTGGTGTT 492 >seq4581 Length=275 Score = 96.9 bits (106), Expect = 3e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 28638 AAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAA 28697 |||||| || ||||| || | || |||||| || | || || ||||| |||||| Sbjct 263 AAAATCCAAGATAAAGAAGGTATTCCTCCAGATCAGCAACGTCTAATTTTTGCTGGCAAA 204 Query 28698 CAATTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCAC 28757 |||||||||||| || ||| || ||||||||||||||| |||||||| ||| |||| Sbjct 203 CAATTGGAAGATGGTAGAACATTGAGCGATTATAACATTCAGAAAGAATCAACTTTGCAT 144 Query 28758 ATGGTATT 28765 ||||||| Sbjct 143 TTGGTATT 136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425307018047940