Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq10223 176 2e-39 >seq10223 Length=44262 Score = 176 bits (194), Expect = 2e-39 Identities = 295/427 (69%), Gaps = 0/427 (0%) Strand=Plus/Plus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 ||| || ||||| || ||||| | |||||| || | |||||| || | | ||||||| Sbjct 21183 CATGAACAAATCCGGTATCCATAATGCATAGAAAAGATCTCTGGCACGTAATTCTTCTGA 21242 Query 25993 TCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATA 26052 || ||| ||| | || ||| || || |||||||||| ||||| ||||| ||||| Sbjct 21243 GCCAGTATTTCGTTTCAAATTTAAAAAGTCGAAAATATCTGCATGCCACGGTTCCAAATA 21302 Query 26053 GATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATT 26112 || || ||| ||| | || ||||||||||| || || | || || || || Sbjct 21303 TATTGCGAAAGCACCAGGACGCTTATTACCACCTTGATCGACATAACGAGCGGTATCGTT 21362 Query 26113 GAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGA 26172 | ||||| |||||| ||||| || ||| ||||| || || |||| | || | || Sbjct 21363 GTAAACTCGCAACATCGGAACCAAACCATTTGAATGACCTTTGGTGCCAACTATGTACGA 21422 Query 26173 TCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGC 26232 ||| | | || |||| ||| ||| || |||||| ||||| || | || || ||| Sbjct 21423 TCCATTTGCTCGAATACAATGAACATTAAGACCGATGCCACCGGCTGACTTCGATATAAT 21482 Query 26233 TGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAA 26292 ||||| | | | |||||| |||| |||| || |||||| | ||| ||||| Sbjct 21483 AGCACATTGTTTCAACGTATCGTAAATACCTTCAATACTATCATCGGCCATCGTCAATAA 21542 Query 26293 AAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATG 26352 |||||| ||||| | ||| | ||| ||||| || |||||||| || || |||| || || Sbjct 21543 AAAACATGAAGACATTTGAGGATGGGTTGTACCAGAATTAAACAAAGTAGGTGAGGCGTG 21602 Query 26353 AGTATAA 26359 ||| || Sbjct 21603 TGTAAAA 21609 Score = 111 bits (122), Expect = 8e-20 Identities = 127/167 (76%), Gaps = 4/167 (2%) Strand=Plus/Plus Query 25015 AAATTCTCCAGACAAAACTCTTCTTATTGATAA--GTTTGAAGTGAATGGTTCAAAACAT 25072 |||||| || || |||||||| | ||| |||| ||| |||||| |||||||||| || Sbjct 20295 AAATTCGCCTGATAAAACTCTCCG-ATT-ATAAATGTTGGAAGTGTATGGTTCAAATGAT 20352 Query 25073 TCATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAA 25132 ||||| |||||||||||||||| || ||||| || ||||| || | || || | Sbjct 20353 TCATTGTTTCCTAAGATTTGAGCTGTCGATGCGGTCGGCATCGGAGCAACTAGAAGACTA 20412 Query 25133 TTTCTCAAACCATATTTAACAATCTCTTGTTTTAATTTATCCCAATC 25179 |||| | ||| |||||| |||| | || ||| ||||| |||||||| Sbjct 20413 TTTCGTAGACCGTATTTAGCAATATTTTCTTTCAATTTTTCCCAATC 20459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252981837174500