Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq14534 87.8 2e-12 >seq14534 Length=9059 Score = 87.8 bits (96), Expect = 2e-12 Identities = 166/244 (68%), Gaps = 3/244 (1%) Strand=Plus/Minus Query 138172 GATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGA 138231 |||||||| || | || || || | || ||||||||||| ||||| || || || | Sbjct 3511 GATGTTTTTTCACTGCTATCGGCCCCATACCGGGACCTCCACCACCATGAGGGATGCAAA 3452 Query 138232 ATGTCTTATGTAAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGAC 138291 |||| || || | ||| ||||| | ||||| |||||| || | || ||||| Sbjct 3451 ATGTTTTGTGAAGATTCAGATGCGAAACATCACTACCATAATCCCCAGGACGGCATAGAC 3392 Query 138292 CTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACC---ACCATTGTCATGAA 138348 | | ||| ||||| | ||| |||||||| ||||| || || | ||| | ||||| Sbjct 3391 CAAGCTGCGCATTCATATTGGCACCATCAAGATAGACTTGCGCCGATCCACATTTATGAA 3332 Query 138349 CGATCTTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAA 138408 |||| ||| |||| |||| | | || || || || ||||||||||| || | Sbjct 3331 TCATCTCACAAATCTCAATGATATCTTCATCGAAGACGCCGAACGTCGATGGATAGGTGA 3272 Query 138409 TCAT 138412 |||| Sbjct 3271 TCAT 3268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578861901127200