Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq8921 154 2e-32 >seq8921 Length=5376 Score = 154 bits (170), Expect = 2e-32 Identities = 251/358 (70%), Gaps = 10/358 (3%) Strand=Plus/Plus Query 47788 CCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCG 47847 || || ||||| |||||||| || |||| |||||||| | ||| |||||||| || || Sbjct 3352 CCGGTTGCAATGACAAAATCTTCTGGTTGATCTTGTTGCATCATCAACCACATTGCTTCA 3411 Query 47848 ACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACAG 47907 || |||||| | || || ||||| || || | ||||||||| || || | | | | Sbjct 3412 ACGTAATCTTTTGCGTGGCCCCAATCCCGTTTGGAATCAAGATTACCAAGCTCAATATAT 3471 Query 47908 TCTTGCTTACCTTCAGAGATTGCTTTT----AATGCTCTTGTAATCTTACGAGTTACAAA 47963 ||| | |||| |||| |||| | ||| || || || | || ||||| Sbjct 3472 TCTAATTCACCT----AGATGAATTTTCGCAACACCTCGAGTGATTTTTCTTGTCACAAA 3527 Query 47964 AGTTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACT-ACAGGCATACATTC 48022 |||||||| | ||| || ||||||||||| |||||||| ||| | ||| || |||| Sbjct 3528 CGTTTCACCTCTTCTCGGTGATTCATGATTGAAAAGAATCCCATTGACA-GCGAACATAT 3586 Query 48023 CGTATGATTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAG 48082 |||| | ||| ||||| || || ||| |||| | | || || | || ||||||| Sbjct 3587 CGTAAGCTTCTCGATAATTAACAACGATCGAGTAGGCGAATAGCTTCGATACGCCATAAG 3646 Query 48083 GAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATA 48140 |||| |||||||| || || || || || | ||||| || || ||||||| ||||| Sbjct 3647 GAGATCGTGGATAAAATGGAGTCGTTTCGGATTGTGGCGTTTCACGCACCTTGCCATA 3704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665337509695200