Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq10223 208 9e-49 seq8921 107 2e-18 >seq10223 Length=44262 Score = 208 bits (230), Expect = 9e-49 Identities = 462/687 (67%), Gaps = 6/687 (1%) Strand=Plus/Minus Query 75904 GGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAA 75963 ||| || |||||||||| ||| | ||||| ||| |||||| | || ||| ||||| Sbjct 21006 GGAAACCGGAACACCATTCATGGTCTACAAAGATCATTGTAATAGAAAATCTAATCAAAA 20947 Query 75964 GAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAA 76023 ||| | || || ||||| |||| ||||||||||| || ||| | || || || Sbjct 20946 AAATCTTGGCACCATCAAATGCTCTAATCTTTGCACCGAGATTGTTGAATATTCATCGCC 20887 Query 76024 GGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGA 76083 || || | |||||||| ||| | || || | || | ||||| | ||||||| || | Sbjct 20886 AGACGAAATAGCTGTTTGTAATCTAGCTTCGGTTGCGTTACCAAAATTTGTCAATCAAAA 20827 Query 76084 GACTCGCACTTTTGATTATGAAAAACTTCATGAAATCA-CAAAGATTGTTACCAAAAATC 76142 | || | | |||| || | | | | | |||| ||||| || | || |||||| Sbjct 20826 AAATCTATCCTACGATTTTGGAGAGTTGAAAAACATCATCAAAG-TTATGACGAAAAATT 20768 Query 76143 TAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGC 76202 | ||| | | ||||| ||||| ||||||| | | || || || ||||||| Sbjct 20767 TGAACAAAATAATTGATGTAAATTATTATCCCTTGCCGGAAGCTCGTCGTTCAAATATGC 20708 Query 76203 GACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCT 76262 |||||||||| ||||| | || || |||||||| || |||| || |||||| | | Sbjct 20707 GACACAGACCGATTGGAATCGGCGTACAAGGTCTAGCTGATGCGTTCATTTTGCTTAGAT 20648 Query 76263 ACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATC 76322 | | ||||| |||||||| || | ||||| | || || ||||| || ||| Sbjct 20647 ATCCTTTTGAAAGTGATGAAGCGAAAAAATTGAATATACAAATTTTCGAAACAATCTATT 20588 Query 76323 ACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTG 76382 ||| | | | ||||| || |||||||| |||| ||| || | ||||| || | || Sbjct 20587 ACGGAGCATTAGAGGCTAGCTGTGAATTAGCTGCTATCCATGGACCTTATGAAACCTATG 20528 Query 76383 AGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAA-- 76440 | || |||||||| || |||| | || || | ||||||||||| | ||||| | Sbjct 20527 AAGGATCTCCCGCATCGAAAGGTATTCTCCAATACGATATGTGGGATCG-CAAACCTACC 20469 Query 76441 GCTCAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAG 76500 | || || || ||||| | || ||| || | | ||||| || || || Sbjct 20468 GATC-TCTGGGATTGGGAAAAATTGAAAGAAAATATTGCTAAATACGGTCTACGAAATAG 20410 Query 76501 TCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATG 76560 |||| | | || || ||||| || || || || || |||||||| || || ||||||| Sbjct 20409 TCTTCTAGTTGCTCCGATGCCGACCGCATCGACAGCTCAAATCTTAGGAAACAATGAATC 20350 Query 76561 CTTTGAACCATACACAACAAACATCTA 76587 |||||||||||||| | ||||| || Sbjct 20349 ATTTGAACCATACACTTCCAACATTTA 20323 >seq8921 Length=5376 Score = 107 bits (118), Expect = 2e-18 Identities = 264/399 (66%), Gaps = 6/399 (2%) Strand=Plus/Plus Query 177558 TTCAACAAACTGCCTCACAGAGTGTGTCTCCCCCGTCGCGACAACATATTCATCAGCCTC 177617 ||||||||| | || || || || | || || || || | ||| | || || | | Sbjct 3321 TTCAACAAATTCTCTGACTGAATGAGCTTCACCGGTTGCAATGACAAAATCTTCTGGTTG 3380 Query 177618 TTCTTGTTGAAGCATGAGCCACATGGCTTCAACATAGTCCTTGGCATGACCCCAGTCTC- 177676 |||||||| | ||| | |||||| |||||||| || || || || || ||||| || | Sbjct 3381 ATCTTGTTGCATCATCAACCACATTGCTTCAACGTAATCTTTTGCGTGGCCCCAATCCCG 3440 Query 177677 --TGGCAGCGTTGAGGTTACCGAGTTCAAGGAACTCTCTCTCACCTTTCACAATTTGTTT 177734 ||| | | || ||||| || |||| | ||| |||||| ||||| Sbjct 3441 TTTGGAATCA---AGATTACCAAGCTCAATATATTCTAATTCACCTAGATGAATTTTCGC 3497 Query 177735 GACGCCATCAGTAATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCGGTGATTCGTGGTT 177794 || || ||| || || |||| ||||| |||||| |||||||||||| || || Sbjct 3498 AACACCTCGAGTGATTTTTCTTGTCACAAACGTTTCACCTCTTCTCGGTGATTCATGATT 3557 Query 177795 GAAGAGGATTCCGGAGCAGGCATACATACCATAGGATTCTCGGTAATTTTTGACGAGCCA 177854 ||| || || || | || ||||| | || | |||||| ||||| |||| | | Sbjct 3558 GAAAAGAATCCCATTGACAGCGAACATATCGTAAGCTTCTCGATAATTAACAACGATCGA 3617 Query 177855 GTGAGCGGCCAATTTGGAGACGCCATAGACGGATCGTGGGTAGAAGGGTGTCTCCTCAGT 177914 || ||| | || || |||||||| |||||||| || || || ||| || | Sbjct 3618 GTAGGCGAATAGCTTCGATACGCCATAAGGAGATCGTGGATAAAATGGAGTCGTTTCGGA 3677 Query 177915 TTGTGGAGTTTCTCGGACTTTACCAAACATCTCCGAAGT 177953 |||||| ||||| || || || ||| ||| ||| || || Sbjct 3678 TTGTGGCGTTTCACGCACCTTGCCATACAACTCTGATGT 3716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596428958716800