Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10]
18,860 sequences; 56,262,437 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq135 145 1e-29
seq718 138 2e-27
seq4581 105 1e-17
seq620 89.7 9e-13
>seq135
Length=1279
Score = 145 bits (160), Expect = 1e-29
Identities = 170/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|||||||| | | || | ||||| || || || | ||||| |||||| || |||
Sbjct 889 ATACCACCACGGAGACGCAATACCAAGTGTAAAGTGGATTCTTTTTGAATATTGTAATCG 830
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
|| |||||| ||| || |||||||| || |||||||| || | |||||||| ||
Sbjct 829 CTCAATGTTCTACCATCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGT 770
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || |||||||||||||| ||||| | ||| | |||| ||| |||||||||| |||
Sbjct 769 GGAATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCA 710
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
||||| | ||| || ||||| || || | ||||| || || || |||||
Sbjct 709 ACTTCCAAAGTAATGGTTTTTCCAGTCAATGTTTTAACGAAAATCTGCAT 660
Score = 131 bits (144), Expect = 3e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|||||||| | | || | |||| || || || | ||||| |||||||| |||
Sbjct 433 ATACCACCCCGGAGACGCAACACCAAGTGTAAAGTGGATTCTTTTTGGATATTATAATCG 374
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
| |||| | ||| || |||||||| || |||||||| || | |||||||| ||
Sbjct 373 CTGAGAGTTCGACCATCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGT 314
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || |||||||| || |||||||| | ||| | |||| |||||||||||||| |||
Sbjct 313 GGAATACCTTCTTTGTCCTGTATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGTTCA 254
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
||||| | ||| || ||||| || || | ||||| || || || |||||
Sbjct 253 ACTTCCAAAGTGATTGTTTTTCCAGTCAATGTTTTCACGAAAATCTGCAT 204
Score = 129 bits (142), Expect = 1e-24
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211
|||| ||||| |||| ||||| |||||||| ||| | |||| | ||| ||
Sbjct 640 ACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCATCTTCC 581
Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271
|||||||| || |||||||| | | || ||||| ||||| || ||||||||||||||
Sbjct 580 AATTGTTTGCCAGCAAAAATCAGACGTTGCTGATCTGGAGGAATACCTTCTTTATCTTGA 521
Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331
||||| | ||| | |||| ||| |||||||||| || ||||| | ||| || || ||
Sbjct 520 ATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCCACTTCCAAAGTAATGGTCTTT 461
Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || | ||||| ||||| || |||||
Sbjct 460 CCAGTCAAAGTTTTGACAAAAATCTGCAT 432
Score = 96.9 bits (106), Expect = 6e-15
Identities = 89/113 (79%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 193248 GGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGAC 193307
||||| ||||||||||| || || ||||| | ||| | ||| ||| |||||||||| |
Sbjct 1279 GGAGGAATTCCTTCTTTGTCATGGATTTTAGCTTTAACGTTTTCAATTGTATCGGAAGGC 1220
Query 193308 TCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|||||||| | ||| |||||||| || || | ||||| || || ||||||||
Sbjct 1219 TCAACTTCCAAAGTAATAGTTTTTCCAGTCAAAGTTTTCACGAAAATTTGCAT 1167
>seq718
Length=674
Score = 138 bits (152), Expect = 2e-27
Identities = 129/164 (79%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 193197 GTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATT 193256
|||| | ||| || |||||||| || || ||||| || | |||||||| || || ||
Sbjct 672 GTTCGACCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATA 613
Query 193257 CCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCT 193316
|||||||||||||| ||||| | ||| | |||| |||||||||||||| |||||||||
Sbjct 612 CCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGCTCAACTTCC 553
Query 193317 AGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
| ||| |||||||| || || | ||||| || || ||||||||
Sbjct 552 AAAGTGATAGTTTTTCCAGTCAAAGTTTTCACGAAAATTTGCAT 509
>seq4581
Length=275
Score = 105 bits (116), Expect = 1e-17
Identities = 118/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|||||||| | | || | ||||| |||||| || | ||||| ||| ||||| |||
Sbjct 118 ATACCACCACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTCTGAATGTTATAATCG 177
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
|| |||||| ||| || |||||||| || |||||||||| | || ||||| |||
Sbjct 178 CTCAATGTTCTACCATCTTCCAATTGTTTGCCAGCAAAAATTAGACGTTGCTGATCTGGA 237
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATT 193288
|| || |||||||||||||| ||||| | ||| | |||
Sbjct 238 GGAATACCTTCTTTATCTTGGATTTTAGCTTTGACATT 275
>seq620
Length=8710
Score = 89.7 bits (98), Expect = 9e-13
Identities = 84/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313
|| |||||||||||||| ||||| | ||| | |||| ||| |||||||||| || |||
Sbjct 8708 ATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCCACT 8649
Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| | ||| |||||||| || || | ||||| ||||| || |||||
Sbjct 8648 TCCAAAGTGATAGTTTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 8602
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899442306475200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |