Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq135 145 1e-29 seq718 138 2e-27 seq4581 105 1e-17 seq620 89.7 9e-13 >seq135 Length=1279 Score = 145 bits (160), Expect = 1e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | || | ||||| || || || | ||||| |||||| || ||| Sbjct 889 ATACCACCACGGAGACGCAATACCAAGTGTAAAGTGGATTCTTTTTGAATATTGTAATCG 830 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || |||||| ||| || |||||||| || |||||||| || | |||||||| || Sbjct 829 CTCAATGTTCTACCATCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGT 770 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||||||||| ||||| | ||| | |||| ||| |||||||||| ||| Sbjct 769 GGAATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCA 710 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| | ||| || ||||| || || | ||||| || || || ||||| Sbjct 709 ACTTCCAAAGTAATGGTTTTTCCAGTCAATGTTTTAACGAAAATCTGCAT 660 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | || | |||| || || || | ||||| |||||||| ||| Sbjct 433 ATACCACCCCGGAGACGCAACACCAAGTGTAAAGTGGATTCTTTTTGGATATTATAATCG 374 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | |||| | ||| || |||||||| || |||||||| || | |||||||| || Sbjct 373 CTGAGAGTTCGACCATCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGT 314 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||| || |||||||| | ||| | |||| |||||||||||||| ||| Sbjct 313 GGAATACCTTCTTTGTCCTGTATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGTTCA 254 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| | ||| || ||||| || || | ||||| || || || ||||| Sbjct 253 ACTTCCAAAGTGATTGTTTTTCCAGTCAATGTTTTCACGAAAATCTGCAT 204 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 |||| ||||| |||| ||||| |||||||| ||| | |||| | ||| || Sbjct 640 ACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCATCTTCC 581 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 |||||||| || |||||||| | | || ||||| ||||| || |||||||||||||| Sbjct 580 AATTGTTTGCCAGCAAAAATCAGACGTTGCTGATCTGGAGGAATACCTTCTTTATCTTGA 521 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 ||||| | ||| | |||| ||| |||||||||| || ||||| | ||| || || || Sbjct 520 ATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCCACTTCCAAAGTAATGGTCTTT 461 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | ||||| ||||| || ||||| Sbjct 460 CCAGTCAAAGTTTTGACAAAAATCTGCAT 432 Score = 96.9 bits (106), Expect = 6e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 193248 GGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGAC 193307 ||||| ||||||||||| || || ||||| | ||| | ||| ||| |||||||||| | Sbjct 1279 GGAGGAATTCCTTCTTTGTCATGGATTTTAGCTTTAACGTTTTCAATTGTATCGGAAGGC 1220 Query 193308 TCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| | ||| |||||||| || || | ||||| || || |||||||| Sbjct 1219 TCAACTTCCAAAGTAATAGTTTTTCCAGTCAAAGTTTTCACGAAAATTTGCAT 1167 >seq718 Length=674 Score = 138 bits (152), Expect = 2e-27 Identities = 129/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 193197 GTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATT 193256 |||| | ||| || |||||||| || || ||||| || | |||||||| || || || Sbjct 672 GTTCGACCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATA 613 Query 193257 CCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCT 193316 |||||||||||||| ||||| | ||| | |||| |||||||||||||| ||||||||| Sbjct 612 CCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGCTCAACTTCC 553 Query 193317 AGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||| |||||||| || || | ||||| || || |||||||| Sbjct 552 AAAGTGATAGTTTTTCCAGTCAAAGTTTTCACGAAAATTTGCAT 509 >seq4581 Length=275 Score = 105 bits (116), Expect = 1e-17 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | || | ||||| |||||| || | ||||| ||| ||||| ||| Sbjct 118 ATACCACCACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTCTGAATGTTATAATCG 177 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || |||||| ||| || |||||||| || |||||||||| | || ||||| ||| Sbjct 178 CTCAATGTTCTACCATCTTCCAATTGTTTGCCAGCAAAAATTAGACGTTGCTGATCTGGA 237 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATT 193288 || || |||||||||||||| ||||| | ||| | ||| Sbjct 238 GGAATACCTTCTTTATCTTGGATTTTAGCTTTGACATT 275 >seq620 Length=8710 Score = 89.7 bits (98), Expect = 9e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 || |||||||||||||| ||||| | ||| | |||| ||| |||||||||| || ||| Sbjct 8708 ATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCCACT 8649 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || | ||| |||||||| || || | ||||| ||||| || ||||| Sbjct 8648 TCCAAAGTGATAGTTTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 8602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899442306475200