Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq4298 208 1e-48 seq135 140 5e-28 seq718 131 2e-25 seq620 98.7 1e-15 seq4581 89.7 8e-13 >seq4298 Length=5336 Score = 208 bits (230), Expect = 1e-48 Identities = 425/627 (68%), Gaps = 8/627 (1%) Strand=Plus/Minus Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214 ||||| ||||||||| || | |||||||| | || || ||||| ||||| || || Sbjct 1998 AAACAAGCAAAATCACAATGAAGTCCTTCATCACGCGAGATCAATTCATTACTGAAAGTC 1939 Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTA-CTAGAAAA 18273 || || ||||| | |||| |||||| |||||||| || | || |||| | | ||| || Sbjct 1938 AAGCCAGGCATCAGTCCTCGTTTTTTAAGCCAAAAGATAGCCGC-AAACGAGCCAGAGAA 1880 Query 18274 GAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTAT--TG 18331 || || || || ||| |||||||| | | | ||||||||| || | ||| | Sbjct 1879 AAAGATTCCTTCGACGGCAGCGAACGCAACAAGACGTTCAGCAAAGCTAACTCTATCATC 1820 Query 18332 CTCAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATA 18391 | ||| |||| | ||||||| ||| | ||| || | | | || Sbjct 1819 TTGAGT--CCATCTGATAGCCCATTTCGCTTTCTTCTCGACACAAGGCAATGTTTGAATG 1762 Query 18392 GCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAA 18451 ||||| || | | |||| | || | |||||||||||| || | ||| | ||| ||| Sbjct 1761 GCATTGAAAAGAAAATCTCTCTCATATTTATCTTTTATATAGGTATTGATGAGCAACGAA 1702 Query 18452 TACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCG 18511 ||||||||||| || || |||| || || |||||||| | |||||| ||| |||||| Sbjct 1701 TACATTTCAGAGTGAATATTTTCGATGGCGATCTGAAATCCATAAAAACATCGAGCCTCT 1642 Query 18512 GGATAT-TGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGC 18570 || ||| |||| || | | || | || | | ||||||||||||||| || ||| Sbjct 1641 GG-TATCTGAACATCACGAATGAAACGCTCAGCTAGATTCTCATTAACTATTCCATCACT 1583 Query 18571 AGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTT 18630 | || || ||||| || |||| ||||||||||||||||| | || | ||| Sbjct 1582 TGCAGCAAAGAATGCTAACACATGAGAGATGAAATGTTTTTCATTCTTATTCAACGAGTT 1523 Query 18631 CCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGC 18690 ||| | ||||| ||| || ||| |||||||| ||||||||| |||| || || Sbjct 1522 CCAATGATCTAGATCGCGACTTAAATCGACTTCTTCGACTGTCCAAAACGATGCCTCCGC 1463 Query 18691 CTGTTTGTACATTTTATAAATATCTTCATGTTGTATAGGAAATAATATATATCGTTTATA 18750 | |||||||| | | ||||||| | ||| || ||||| || | | |||| || Sbjct 1462 TTTCTTGTACATCTCCCAGATATCTTTGTATTGAATTGGAAACAAAACAAATCGATTCGG 1403 Query 18751 ATTTTTTATTAACATAGGTTCTTCCAT 18777 ||||| | || || ||||| || || Sbjct 1402 ATTTTCTCGTAGCAATGGTTCATCAAT 1376 >seq135 Length=1279 Score = 140 bits (154), Expect = 5e-28 Identities = 140/182 (77%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || |||||||||||||||||||||| ||||| || ||||| ||| ||| Sbjct 660 ATGCAGATTTTCGTTAAAACATTGACTGGAAAAACCATTACTTTGGAAGTTGAACCTTCC 719 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || ||| |||||| |||||||||||||| || || ||||| ||| Sbjct 720 GATACCATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGATCAA 779 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||||| ||| || || || | |||||| ||||| || ||||| ||| Sbjct 780 CAACGTTTGATTTTTGCTGGCAAACAATTGGAAGATGGTAGAACATTGAGCGATTACAAT 839 Query 156003 AT 156004 || Sbjct 840 AT 841 Score = 136 bits (150), Expect = 6e-27 Identities = 146/192 (76%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | |||||||||||||||||||| || || || ||||| ||| ||| Sbjct 204 ATGCAGATTTTCGTGAAAACATTGACTGGAAAAACAATCACTTTGGAAGTTGAACCTTCC 263 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||| || ||| ||||||||| || |||||||| || || ||||| ||| Sbjct 264 GATACTATTGAAAATGTCAAAGCTAAAATACAGGACAAAGAAGGTATTCCACCAGATCAA 323 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||||| ||| ||||| || | |||||| ||||| | ||||||| Sbjct 324 CAACGTTTGATTTTTGCTGGTAAACAATTGGAAGATGGTCGAACTCTCAGCGATTATA-- 381 Query 156003 ATATCCAAAGAG 156014 ||||||||| || Sbjct 382 ATATCCAAAAAG 393 Score = 127 bits (140), Expect = 3e-24 Identities = 144/192 (75%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| ||||||||||| || ||||| || ||||| ||| ||| Sbjct 432 ATGCAGATTTTTGTCAAAACTTTGACTGGAAAGACCATTACTTTGGAAGTGGAACCTTCC 491 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || ||| |||||| |||||||||||||| || |||||||| || Sbjct 492 GATACCATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAG 551 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | |||||| ||| || || || | |||||| ||||| | ||||||| Sbjct 552 CAACGTCTGATTTTTGCTGGCAAACAATTGGAAGATGGTCGAACTCTCAGCGATTATA-- 609 Query 156003 ATATCCAAAGAG 156014 ||||||||| || Sbjct 610 ATATCCAAAAAG 621 Score = 113 bits (124), Expect = 7e-20 Identities = 137/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 155848 CTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATA 155907 ||||||||||||| || || ||||| ||| ||| |||| ||| ||| || ||| || Sbjct 1 CTGGAAAAACTATCACTTTGGAAGTGGAACCTTCCGATACGATTGAAAATGTCAAAGCTA 60 Query 155908 AAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGC 155967 |||| ||||| |||||||| || || ||||| |||||| | ||||||| || ||||| | Sbjct 61 AAATTCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTTTGATTTTCGCTGGTAAAC 120 Query 155968 AGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGACGCTTCATT 156027 | | |||||| ||||| || ||||| ||||| ||||| | || | |||| Sbjct 121 AATTGGAAGATGGTAGAACATTGAGCGATTACAATATCCAGAAAGAATCCACTTTGCATT 180 Query 156028 TAGTGTT 156034 | ||||| Sbjct 181 TGGTGTT 187 Score = 96.9 bits (106), Expect = 5e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| |||||||||||||||||||| || ||||| || ||| Sbjct 1167 ATGCAAATTTTCGTGAAAACTTTGACTGGAAAAACTATTACTTTGGAAGTTGAGCCTTCC 1226 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCC 155935 |||| ||| |||||| ||| |||||| || || |||||||| || ||||| Sbjct 1227 GATACAATTGAAAACGTTAAAGCTAAAATCCATGACAAAGAAGGAATTCCTCC 1279 Score = 89.7 bits (98), Expect = 8e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| |||||||||||||||||||| || ||||| || ||| Sbjct 888 ATGCAGATTTTTGTCAAAACTTTGACTGGAAAAACTATTACTTTGGAAGTTGAGCCTTCC 947 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGG 155926 |||| ||| ||| || ||| ||||||||| || |||||||| Sbjct 948 GATACAATTGAAAATGTCAAAGCTAAAATACAGGACAAAGAAGG 991 >seq718 Length=674 Score = 131 bits (144), Expect = 2e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| |||||||||||||| ||||| || ||||| || ||| Sbjct 46 ATGCAGATTTTCGTGAAAACTTTGACTGGAAAAACCATTACTTTGGAAGTTGAGCCTTCC 105 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || ||| |||||| ||||| |||||||| || |||||||| ||| Sbjct 106 GATACGATTGAAAATGTCAAAGCTAAAATTCAAGACAAAGAAGGTATTCCTCCAGATCAA 165 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||||| || ||||| || | |||||| ||||| | ||||||||| Sbjct 166 CAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGTCGAACTCTCAGCGATTATAAT 225 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || ||||| | || | ||||| ||||| Sbjct 226 ATCCAAAAAGAATCCACTTTGCATTTGGTGTT 257 Score = 123 bits (136), Expect = 4e-23 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| ||||||||||||||||| || || ||||| || ||| Sbjct 509 ATGCAAATTTTCGTGAAAACTTTGACTGGAAAAACTATCACTTTGGAAGTTGAGCCTTCC 568 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||| || ||| |||||| |||||||||||||| || || ||||| ||| Sbjct 569 GATACTATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGATCAA 628 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 ||| | ||||||| || || || || | |||||| Sbjct 629 CAACGTTTGATTTTCGCTGGCAAACAATTGGAAGAT 664 Score = 116 bits (128), Expect = 5e-21 Identities = 146/199 (73%), Gaps = 9/199 (5%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || ||||||| |||||||||||||| || || || ||||| ||| ||| Sbjct 274 ATGCAGATTTTCGTTAAAACTTTGACTGGAAAAACAATCACTTTGGAAGTTGAACCTTCC 333 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || ||| ||||||||| || |||||||| || || ||||| ||| Sbjct 334 GATACAATTGAAAATGTCAAAGCTAAAATACAGGACAAAGAAGGTATTCCACCAGATCAA 393 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT------AC-CAGAACTTTATCAGA 155995 ||| | ||||||| || || || || | |||||| || | ||||| | || Sbjct 394 CAACGTTTGATTTTCGCTGGCAAACAATTGGAAGATGGTCGAACTCNGAACTCTCAGCGA 453 Query 155996 TTATAATATATCCAAAGAG 156014 ||||| ||||||||| || Sbjct 454 TTATA--ATATCCAAAAAG 470 >seq620 Length=8710 Score = 98.7 bits (108), Expect = 1e-15 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || |||||||| ||| ||||||| ||||||||||||||||| || || ||||| ||| | Sbjct 8283 AAGATGCAAATTTTTGTTAAAACTTTGACTGGAAAAACTATCACTTTGGAAGTGGAACCT 8342 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGG 155926 || |||| ||| |||||| ||| ||| || ||||| |||||||| Sbjct 8343 TCCGATACAATTGAAAACGTCAAAGCTAAGATTCAAGACAAAGAAGG 8389 Score = 95.1 bits (104), Expect = 2e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| ||||||||||||||||| || || ||||| ||| ||| Sbjct 8602 ATGCAGATTTTTGTCAAAACTTTGACTGGAAAAACTATCACTTTGGAAGTGGAACCTTCC 8661 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCAT 155929 |||| ||| ||| || ||| |||||| |||||||||||||| || Sbjct 8662 GATACCATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTAT 8708 >seq4581 Length=275 Score = 89.7 bits (98), Expect = 8e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| ||||||||||| || ||||| || ||||| ||| ||| Sbjct 119 ATGCAGATTTTTGTCAAAACTTTGACTGGAAAGACCATTACCTTGGAAGTTGAACCTTCC 60 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGG 155926 |||| ||| |||||| ||| ||||||||| || |||||||| Sbjct 59 GATACGATTGAAAACGTCAAAGCTAAAATACAGGACAAAGAAGG 16 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731699461176000