Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq135 181 2e-40 seq4298 167 5e-36 seq718 154 3e-32 seq4581 123 5e-23 >seq135 Length=1279 Score = 181 bits (200), Expect = 2e-40 Identities = 178/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| ||||| || |||||||| | ||||| ||||| ||||| Sbjct 889 ATACCACCACGGAGACGCAATACCAAGTGTAAAGTGGATTCTTTTTGAATATTGTAATCG 830 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 ||||||| |||| ||||||||||| |||||||| || || | |||||||| ||| Sbjct 829 CTCAATGTTCTACCATCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGT 770 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||||||||| |||||| ||| ||||| || | ||| || | ||| Sbjct 769 GGAATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCA 710 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | |||||||||||| ||||| |||||||||| || |||||||| Sbjct 709 ACTTCCAAAGTAATGGTTTTTCCAGTCAATGTTTTAACGAAAATCTGCAT 660 Score = 172 bits (190), Expect = 1e-37 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| || || || |||||||| | ||||| |||||||||||| Sbjct 433 ATACCACCCCGGAGACGCAACACCAAGTGTAAAGTGGATTCTTTTTGGATATTATAATCG 374 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | ||||| |||| |||||||||||||||||||| || || | |||||||| ||| Sbjct 373 CTGAGAGTTCGACCATCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGT 314 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| || ||||||||| ||| ||||| |||| ||| || | ||| Sbjct 313 GGAATACCTTCTTTGTCCTGTATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGTTCA 254 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||| || ||||| ||||| |||||||| | || |||||||| Sbjct 253 ACTTCCAAAGTGATTGTTTTTCCAGTCAATGTTTTCACGAAAATCTGCAT 204 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| || || || || ||||||| ||||| |||||||||||| Sbjct 661 ATGCCACCACGGAGACGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCG 602 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | ||||| |||| ||||||||||| |||||||| || | | || ||||| || Sbjct 601 CTGAGAGTTCGACCATCTTCCAATTGTTTGCCAGCAAAAATCAGACGTTGCTGATCTGGA 542 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||||||||| |||||| ||| ||||| || | ||| || | ||| Sbjct 541 GGAATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCC 482 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||||||||| || ||||| || ||||| | ||| |||||||| Sbjct 481 ACTTCCAAAGTAATGGTCTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 432 Score = 136 bits (150), Expect = 8e-27 Identities = 153/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | || || || || ||||| ||||| | ||||| |||||| ||||| Sbjct 205 ATACCACCACGGAGTCGCAACACCAAATGCAAAGTGGATTCTTTCTGGATATTGTAATCG 146 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 ||||||| |||| ||||||||||||||||| || || || | |||||||| ||| Sbjct 145 CTCAATGTTCTACCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGT 86 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| |||||| ||| ||||| || | ||| || | ||| Sbjct 85 GGAATACCTTCTTTGTCTTGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGTTCC 26 Query 192487 ACTTCTAGAGTAATGGTTTTACCAG 192511 ||||| | ||| || ||||| |||| Sbjct 25 ACTTCCAAAGTGATAGTTTTTCCAG 1 Score = 84.2 bits (92), Expect = 4e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | || || || || ||||| ||||| | ||||| |||||| ||||| Sbjct 1168 ATACCACCACGGAGTCGCAACACCAAATGCAAAGTGGATTCTTTCTGGATATTGTAATCG 1109 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 ||||||| |||| |||||||||||||||||||| || || | || ||||| || Sbjct 1108 CTCAATGTTCTGCCATCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGCTGATCTGGC 1049 Query 192427 GGTATTCCT 192435 || || ||| Sbjct 1048 GGAATACCT 1040 >seq4298 Length=5336 Score = 167 bits (184), Expect = 5e-36 Identities = 393/601 (65%), Gaps = 0/601 (0%) Strand=Plus/Minus Query 49821 AAACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTT 49880 ||||| ||||||||| ||| | || || || | || || ||||||||||| ||||| Sbjct 1998 AAACAAGCAAAATCACAATGAAGTCCTTCATCACGCGAGATCAATTCATTACTGAAAGTC 1939 Query 49881 AATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAG 49940 || || ||||| | ||||| |||||||||||||| || | ||||| | ||| || Sbjct 1938 AAGCCAGGCATCAGTCCTCGTTTTTTAAGCCAAAAGATAGCCGCAAACGAGCCAGAGAAA 1879 Query 49941 AATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCT 50000 || || || ||||| || || || | | | | | |||| | | | |||||||| Sbjct 1878 AAGATTCCTTCGACGGCAGCGAACGCAACAAGACGTTCAGCAAAGCTAACTCTATCATCT 1819 Query 50001 AATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCT 50060 |||| | |||||||| | ||||| || | || | |||| | ||| || || Sbjct 1818 TGAGTCCATCTGATAGCCCATTTCGCTTTCTTCTCGACACAAGGCAATGTTTGAATGGCA 1759 Query 50061 TTAAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATAC 50120 || || | || | | |||| || | || |||||| Sbjct 1758 TTGAAAAGAAAATCTCTCTCATATTTATCTTTTATATAGGTATTGATGAGCAACGAATAC 1699 Query 50121 ATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAA 50180 |||||||| || | | ||| || || || |||||| |||||| || || |||| Sbjct 1698 ATTTCAGAGTGAATATTTTCGATGGCGATCTGAAATCCATAAAAACATCGAGCCTCTGGT 1639 Query 50181 TACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCT 50240 |||||| || || ||| || ||| ||| ||||||| || || |||||| ||| Sbjct 1638 ATCTGAACATCACGAATGAAACGCTCAGCTAGATTCTCATTAACTATTCCATCACTTGCA 1579 Query 50241 GCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAA 50300 || ||||||||||| || | || |||||||||||||| | || || | |||| Sbjct 1578 GCAAAGAATGCTAACACATGAGAGATGAAATGTTTTTCATTCTTATTCAACGAGTTCCAA 1519 Query 50301 GATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGATTTT 50360 || |||||| |||||| |||||||| | ||||||||| ||||| | | ||| Sbjct 1518 TGATCTAGATCGCGACTTAAATCGACTTCTTCGACTGTCCAAAACGATGCCTCCGCTTTC 1459 Query 50361 TTATACATTTGATATATATCAAAATGTTCAATGGGAAATAGTACATATCGTTTAGTATTT 50420 || ||||| | | ||||| | || ||| ||||| | ||| |||| || | |||| Sbjct 1458 TTGTACATCTCCCAGATATCTTTGTATTGAATTGGAAACAAAACAAATCGATTCGGATTT 1399 Query 50421 T 50421 | Sbjct 1398 T 1398 >seq718 Length=674 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | || || || || ||||| ||||| | ||||| |||||||||||| Sbjct 275 ATACCACCACGGAGTCGCAACACCAAATGCAAAGTGGATTCTTTTTGGATATTATAATCG 216 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | ||||| |||| ||||||||||||||||| || || || | |||||||| || Sbjct 215 CTGAGAGTTCGACCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGA 156 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| |||||| ||| ||||| || | ||| || | || Sbjct 155 GGAATACCTTCTTTGTCTTGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGCTCA 96 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | |||||||||||| ||||| || ||||| | || |||||||| Sbjct 95 ACTTCCAAAGTAATGGTTTTTCCAGTCAAAGTTTTCACGAAAATCTGCAT 46 Score = 150 bits (166), Expect = 4e-31 Identities = 176/237 (74%), Gaps = 7/237 (3%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| || || || || ||||||| ||||| |||||||||||| Sbjct 510 ATACCACCACGGAGACGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCG 451 Query 192367 --GATAAT-----GTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTG 192419 || | | ||||| |||| ||||||||||| ||||| || || || | ||||| Sbjct 450 CTGAGAGTTCNGAGTTCGACCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTG 391 Query 192420 ATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGA 192479 ||| ||||| || |||||||| || ||||||||| ||| ||||| || | ||| || Sbjct 390 ATCTGGTGGAATACCTTCTTTGTCCTGTATTTTAGCTTTGACATTTTCAATTGTATCGGA 331 Query 192480 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | ||| ||||| | ||| || ||||| ||||| || ||||||| || |||||||| Sbjct 330 AGGTTCAACTTCCAAAGTGATTGTTTTTCCAGTCAAAGTTTTAACGAAAATCTGCAT 274 Score = 120 bits (132), Expect = 6e-22 Identities = 125/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 192373 GTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATT 192432 ||||| |||| ||||||||||| ||||| || || || | |||||||| ||||| || Sbjct 672 GTTCGACCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATA 613 Query 192433 CCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCT 192492 |||||||||||||| |||||| ||| ||||| |||| ||| || | || ||||| Sbjct 612 CCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGCTCAACTTCC 553 Query 192493 AGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | ||| || ||||| ||||| || ||||| | || || ||||| Sbjct 552 AAAGTGATAGTTTTTCCAGTCAAAGTTTTCACGAAAATTTGCAT 509 >seq4581 Length=275 Score = 123 bits (136), Expect = 5e-23 Identities = 122/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| ||||| ||||| ||||| | ||||| || |||||||| Sbjct 118 ATACCACCACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTCTGAATGTTATAATCG 177 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 ||||||| |||| ||||||||||| |||||||| |||| | || ||||| || Sbjct 178 CTCAATGTTCTACCATCTTCCAATTGTTTGCCAGCAAAAATTAGACGTTGCTGATCTGGA 237 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATT 192464 || || |||||||||||||| |||||| ||| ||||| Sbjct 238 GGAATACCTTCTTTATCTTGGATTTTAGCTTTGACATT 275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984242106561000