Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10]
18,860 sequences; 56,262,437 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq135 176 8e-39
seq718 158 2e-33
seq4298 134 2e-26
seq4581 109 1e-18
>seq135
Length=1279
Score = 176 bits (194), Expect = 8e-39
Identities = 177/230 (77%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|||||||| | || || ||||| || |||||||| | ||||| |||||| |||||
Sbjct 889 ATACCACCACGGAGACGCAATACCAAGTGTAAAGTGGATTCTTTTTGAATATTGTAATCG 830
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|| | || | || ||||||||||| ||||||||||| || | ||||| || |||
Sbjct 829 CTCAATGTTCTACCATCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGT 770
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || |||||||||||||| |||||| ||| ||||| || ||||| || | |||
Sbjct 769 GGAATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCA 710
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
||||| | |||||||||||| ||||| |||||||||| ||| ||||||||
Sbjct 709 ACTTCCAAAGTAATGGTTTTTCCAGTCAATGTTTTAACGAAAATCTGCAT 660
Score = 167 bits (184), Expect = 4e-36
Identities = 175/230 (76%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|||||||| | || || || || || |||||||| | ||||| |||||||||||
Sbjct 433 ATACCACCCCGGAGACGCAACACCAAGTGTAAAGTGGATTCTTTTTGGATATTATAATCG 374
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| || ||| | || ||||||||||||||||||||||| || | ||||| || |||
Sbjct 373 CTGAGAGTTCGACCATCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGT 314
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || |||||||| || ||||||||| ||| ||||| |||||||| || | |||
Sbjct 313 GGAATACCTTCTTTGTCCTGTATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGTTCA 254
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
||||| | ||| || ||||| ||||| |||||||| | ||| ||||||||
Sbjct 253 ACTTCCAAAGTGATTGTTTTTCCAGTCAATGTTTTCACGAAAATCTGCAT 204
Score = 140 bits (154), Expect = 6e-28
Identities = 169/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|| ||||| | || || || || || || ||||||| ||||| |||||||||||
Sbjct 661 ATGCCACCACGGAGACGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCG 602
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| || ||| | || ||||||||||| ||||||||||| | | || || || ||
Sbjct 601 CTGAGAGTTCGACCATCTTCCAATTGTTTGCCAGCAAAAATCAGACGTTGCTGATCTGGA 542
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || |||||||||||||| |||||| ||| ||||| || ||||| || | |||
Sbjct 541 GGAATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCC 482
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
||||| | ||||||||| || ||||| || ||||| | || ||||||||
Sbjct 481 ACTTCCAAAGTAATGGTCTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 432
Score = 127 bits (140), Expect = 4e-24
Identities = 151/205 (74%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|||||||| | ||||| || || ||||| ||||| | ||||| ||||| |||||
Sbjct 205 ATACCACCACGGAGTCGCAACACCAAATGCAAAGTGGATTCTTTCTGGATATTGTAATCG 146
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|| | || | || ||||||||||||||||| ||||| || | ||||| || |||
Sbjct 145 CTCAATGTTCTACCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGT 86
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || |||||||| ||||| |||||| ||| ||||| || ||||| || | |||
Sbjct 85 GGAATACCTTCTTTGTCTTGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGTTCC 26
Query 172020 ACTTCTAGAGTAATGGTTTTACCAG 172044
||||| | ||| || ||||| ||||
Sbjct 25 ACTTCCAAAGTGATAGTTTTTCCAG 1
>seq718
Length=674
Score = 158 bits (174), Expect = 2e-33
Identities = 173/230 (75%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|||||||| | ||||| || || ||||| ||||| | ||||| |||||||||||
Sbjct 275 ATACCACCACGGAGTCGCAACACCAAATGCAAAGTGGATTCTTTTTGGATATTATAATCG 216
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| || ||| | || ||||||||||||||||| ||||| || | ||||| || ||
Sbjct 215 CTGAGAGTTCGACCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGA 156
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || |||||||| ||||| |||||| ||| ||||| || ||||| || | ||
Sbjct 155 GGAATACCTTCTTTGTCTTGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGCTCA 96
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
||||| | |||||||||||| ||||| || ||||| | ||| ||||||||
Sbjct 95 ACTTCCAAAGTAATGGTTTTTCCAGTCAAAGTTTTCACGAAAATCTGCAT 46
Score = 145 bits (160), Expect = 1e-29
Identities = 175/237 (74%), Gaps = 7/237 (3%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|||||||| | || || || || || || ||||||| ||||| |||||||||||
Sbjct 510 ATACCACCACGGAGACGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCG 451
Query 171900 GATAAAGATC---GTTCG----TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952
| || || ||||| || ||||||||||| ||||| ||||| || | |||||
Sbjct 450 CTGAGAGTTCNGAGTTCGACCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTG 391
Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012
|| ||||| || |||||||| || ||||||||| ||| ||||| || ||||| ||
Sbjct 390 ATCTGGTGGAATACCTTCTTTGTCCTGTATTTTAGCTTTGACATTTTCAATTGTATCGGA 331
Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
| ||| ||||| | ||| || ||||| ||||| || ||||||| ||| ||||||||
Sbjct 330 AGGTTCAACTTCCAAAGTGATTGTTTTTCCAGTCAAAGTTTTAACGAAAATCTGCAT 274
Score = 122 bits (134), Expect = 2e-22
Identities = 120/155 (77%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974
|| ||||||||||| ||||| ||||| || | ||||| || ||||| || |||||||||
Sbjct 663 TCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTA 604
Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034
||||| |||||| ||| ||||| |||||||| || | || ||||| | ||| ||
Sbjct 603 TCTTGAATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGCTCAACTTCCAAAGTGATA 544
Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
||||| ||||| || ||||| | ||| || |||||
Sbjct 543 GTTTTTCCAGTCAAAGTTTTCACGAAAATTTGCAT 509
>seq4298
Length=5336
Score = 134 bits (148), Expect = 2e-26
Identities = 214/307 (70%), Gaps = 0/307 (0%)
Strand=Plus/Minus
Query 39417 GAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCT 39476
|||||||||||||| || | | ||| || || || |||||| |||||| | ||
Sbjct 1704 GAATACATTTCAGAGTGAATATTTTCGATGGCGATCTGAAATCCATAAAAACATCGAGCC 1645
Query 39477 TCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCA 39536
|||| |||||| || || ||| || ||| ||| ||||||| || || ||||||
Sbjct 1644 TCTGGTATCTGAACATCACGAATGAAACGCTCAGCTAGATTCTCATTAACTATTCCATCA 1585
Query 39537 GATGCTGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTT 39596
||| || ||||||||||| |||| || |||||||||||||| | || ||
Sbjct 1584 CTTGCAGCAAAGAATGCTAACACATGAGAGATGAAATGTTTTTCATTCTTATTCAACGAG 1525
Query 39597 TCCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACG 39656
| |||| || |||||| |||||| |||||||| | ||||||||| ||||| |
Sbjct 1524 TTCCAATGATCTAGATCGCGACTTAAATCGACTTCTTCGACTGTCCAAAACGATGCCTCC 1465
Query 39657 GATTTTTTATACATTTGATATATATCAAAATGTTCAATGGGAAATAACACATATCGTTTA 39716
| ||| || ||||| | | ||||| | || ||| ||||| || ||| |||| ||
Sbjct 1464 GCTTTCTTGTACATCTCCCAGATATCTTTGTATTGAATTGGAAACAAAACAAATCGATTC 1405
Query 39717 GTATTTT 39723
| |||||
Sbjct 1404 GGATTTT 1398
Score = 86.0 bits (94), Expect = 1e-11
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 39120 AGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAA 39179
|| ||||| |||||||| ||| | ||||| || | || || ||||||||||| |||
Sbjct 2001 AGCAAACAAGCAAAATCACAATGAAGTCCTTCATCACGCGAGATCAATTCATTACTGAAA 1942
Query 39180 GTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAA 39239
|| || || ||||| | ||||| |||||||||||||| || | ||||| | |||
Sbjct 1941 GTCAAGCCAGGCATCAGTCCTCGTTTTTTAAGCCAAAAGATAGCCGCAAACGAGCCAGAG 1882
Query 39240 AAGAATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCA 39299
|| || || || || || || || || | | | | | |||| | | | |||||
Sbjct 1881 AAAAAGATTCCTTCGACGGCAGCGAACGCAACAAGACGTTCAGCAAAGCTAACTCTATCA 1822
Query 39300 TCTAAAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGG 39346
||| | |||| | || ||||| | ||||| || | || | ||||
Sbjct 1821 TCTTGAGTCCATCTGATAGCCCATTTCGCTTTCTTCTCGACACAAGG 1775
>seq4581
Length=275
Score = 109 bits (120), Expect = 1e-18
Identities = 119/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|||||||| | ||| || ||||| ||||| ||||| | ||||| ||| ||||||||
Sbjct 118 ATACCACCACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTCTGAATGTTATAATCG 177
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|| | || | || ||||||||||| ||||||||||||| | || || || ||
Sbjct 178 CTCAATGTTCTACCATCTTCCAATTGTTTGCCAGCAAAAATTAGACGTTGCTGATCTGGA 237
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATT 171997
|| || |||||||||||||| |||||| ||| |||||
Sbjct 238 GGAATACCTTCTTTATCTTGGATTTTAGCTTTGACATT 275
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 904922614188000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |