Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10]
18,860 sequences; 56,262,437 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq10223 168 2e-36
seq4298 147 6e-30
seq6917 86.0 2e-11
seq12816 84.2 6e-11
>seq10223
Length=44262
Score = 168 bits (186), Expect = 2e-36
Identities = 536/823 (65%), Gaps = 15/823 (2%)
Strand=Plus/Plus
Query 155631 TATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTA 155690
||||| |||||||| ||| || ||||| | ||||||||||| | ||| || || |||
Sbjct 20896 TATTCAACAATCTCGGTGCAAAGATTAGAGCATTTGATGGTGCCAAGATTTTTTTGATTA 20955
Query 155691 GATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCG 155750
||||| || |||||| ||| ||||| | ||| |||| ||||| || |||| ||| ||
Sbjct 20956 GATTTTCTATTACAATGATCTTTGTAGACCATGAATGGTGTTCCGGTTTCCACCTGAGCA 21015
Query 155751 TCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGAC 155810
|| | || | ||| || ||||| || |||||| ||| |||| || |
Sbjct 21016 TCGACTATTGCGAACCAAAGTTCACGAGCTGGAATTTGTTTGCGATATCGATTCTCTTTC 21075
Query 155811 TCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCAC 155870
||||||||| ||| || | | | | || || || || ||| || |||||| ||
Sbjct 21076 TCATATTTCTCATAGAGAGCTTCGAATTCTTCGCCCCAAACATCTTGCAATCCAGGACAT 21135
Query 155871 TTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTAC---ACGCTCCATAAATACA 155927
| | |||||| | || |||||||| || || || | ||| | ||| || | |
Sbjct 21136 TCTTTGGGGCACATCAACGACCAAACCCCAT---CGGTTTCGCAACGTTTCATGAACAAA 21192
Query 155928 TCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCC-GTGATT 155986
|| ||| | ||||||||||| || || || | | || || ||| || ||
Sbjct 21193 TCCGGTATCCATAATGCATAGAAAAGATCTCTGGCACGTAATTCTTCTGAGCCAGTATTT 21252
Query 155987 C-TTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAA 156045
| || | | | ||| || || |||||| | ||| || |||| ||| || || |
Sbjct 21253 CGTTTC--AAATTTAAAAAGTCGAAAATATCTGCATGCCACGGTTCCAAATATATTGCGA 21310
Query 156046 AACTACC---ATTCCTCTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACAC 156102
|| ||| | | | || ||||| ||||| ||||| ||||| || | ||| | || |
Sbjct 21311 AAGCACCAGGACGCTTATTACCACCTTGATCGACATAACGAGCGGTATCGTTGTAAACTC 21370
Query 156103 CTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATG 156162
| ||| |||| | |||||| ||| || ||||| || || | ||| ||| ||
Sbjct 21371 GCAACATCGGAACCAAACCATTTGAATGACCTTTGGTGCCAACTATGTACGATCCATTTG 21430
Query 156163 AGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATT 156222
|||| | ||||| || || || || ||||| | | || || || ||| ||||
Sbjct 21431 CTCGAATACAATGAACATTAAGACCGATGCCACCGGCTGACTTCGATATAATAGCACATT 21490
Query 156223 CCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACG 156282
|| | |||| | |||||||||||||| |||||| |||| | | || | | || |
Sbjct 21491 GTTTCAACGTATCGTAAATACCTTCAATACTATCATCGGCCATCGTCAATAAAAAACATG 21550
Query 156283 AACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAAT-AAAA 156341
|| | |||||| | | ||| |||| || || | ||||||| || || | ||||
Sbjct 21551 AAGACATTTGAGGATGGGTTGTACCAGAATTAAACAAAGTAGGTGAGGCGTGTGTAAAAA 21610
Query 156342 TACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATA 156401
|| | |||||||| || || ||||| | | |||| || || |||
Sbjct 21611 GACCT-TTAGACATTAGATTATACGTCTCGATGGCCGAATCAATATCTTCTTTATGTATA 21669
Query 156402 CAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAA 156444
| ||| | ||| |||||| |||||||||| || | || ||||
Sbjct 21670 CCGATGGCGACTCTCATCAACATATGCTGTGGTCTTTCGACAA 21712
>seq4298
Length=5336
Score = 147 bits (162), Expect = 6e-30
Identities = 384/578 (66%), Gaps = 6/578 (1%)
Strand=Plus/Plus
Query 133070 AATAGGTTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAG 133129
||| | |||||| |||| |||||| | || | || || ||| ||||||| || ||| |
Sbjct 1406 AATCGATTTGTTTTGTTTCCAATTCAATACAAAGATATCTGGGAGATGTACAAGAAAGCG 1465
Query 133130 CAAGATTTATTTTGGACT-TCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACTGGGA 133188
| | | |||||||| || | ||||| |||||| || | || || ||| |
Sbjct 1466 GAGGCATCGTTTTGGACAGTCGAA-GAAGTCGATTTAAGTCGCGATCTAGATCATTGGAA 1524
Query 133189 AGCCCTTACTGGGGATGAAAAACATTTTATTTCT-ATGATTTTAGCGTTTTTTGCTGCGA 133247
| | | | | ||||||||||||| || ||| ||| | ||||| || |||||||| |
Sbjct 1525 CTCGTTGAATAAGAATGAAAAACATTTCATCTCTCATG-TGTTAGCATTCTTTGCTGCAA 1583
Query 133248 GTGATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCG 133307
||||||| || ||| ||| ||| ||| || || || | || ||||| | | |
Sbjct 1584 GTGATGGAATAGTTAATGAGAATCTAGCTGAGCGTTTCATTCGTGATGTTCAGATACCAG 1643
Query 133308 AAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATT 133367
| || || |||||||| | ||||| || || |||||||| || ||| | ||||
Sbjct 1644 AGGCTCGATGTTTTTATGGATTTCAGATCGCCATCGAAAATATTCACTCTGAAATGTATT 1703
Query 133368 CTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCCA 133427
| || || |||| || || ||||||| ||| | || ||||| ||||
Sbjct 1704 CGTTGCTCATCAATACCTATATAAAAGATAAATATGAGAGAGATTTTCTTTTCAATGCCA 1763
Query 133428 TTAGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACA 133487
|| ||| |||||| | | |||||| | | |||||||| | ||||| || ||
Sbjct 1764 TTCAAACATTGCCTTGTGTCGAGAAGAAAGCGAAATGGGCTATCAGATGGACTCAAGATG 1823
Query 133488 AGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCA 133547
| | | || |||||| ||||| ||||| || |||| || || || || ||||||
Sbjct 1824 ATAGAGTTAGCTTTGCTGAACGTCTTGTTGCGTTCGCTGCCGTCGAAGGAATCTTTTTCT 1883
Query 133548 GTGGTGCGTTCTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGT 133606
||| |||| ||| |||| |||||||||||||| || || | | ||||| || |
Sbjct 1884 CTGGCTCGTT-TGCGGCTATCTTTTGGCTTAAAAAACGAGGACTGATGCCTGGCTTGACT 1942
Query 133607 TTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCA 133644
|| ||| ||| | || || | || || | ||||||
Sbjct 1943 TTCAGTAATGAATTGATCTCGCGTGATGAAGGACTTCA 1980
>seq6917
Length=26946
Score = 86.0 bits (94), Expect = 2e-11
Identities = 160/232 (69%), Gaps = 10/232 (4%)
Strand=Plus/Minus
Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544
||||| || | |||| |||||| || ||||| || || |||||||||||||||||||||
Sbjct 9020 GCACCATGAGCAATCTGACAATCTCGTTCCATCTCTCCAAAACGAAGACCACCATCGCGA 8961
Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGT 251604
|| ||||| || || || || ||| | || ||||| ||| | |||
Sbjct 8960 GCTCTACCTTCCATTGGTTGTCGGACTAGAATCTGCACTGGACCTCTGGCCCTTGAATGA 8901
Query 251605 TGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGATGCTC 251664
|||||| | ||||||||||| | |||||| || | | ||| || | ||| || |
Sbjct 8900 ATCTTATCGTCCACCATATGCTTCAAACGCTGATAATAAGTGGGTCCTAGGAATAT--TT 8843
Query 251665 GAAGGCATTTG-CTCT----CCAGTTAGAGCGTTATACATAACTTCGTTTCC 251711
|| || ||| || | ||||| |||| |||||||| ||||| | |||
Sbjct 8842 GA---CAATTGACTTTTCGGCCAGTATGAGCATTATACATCACTTCATATCC 8794
>seq12816
Length=32390
Score = 84.2 bits (92), Expect = 6e-11
Identities = 203/302 (67%), Gaps = 4/302 (1%)
Strand=Plus/Minus
Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089
|||| | ||| || || || || ||||| ||||| || | |||||| | || | |||
Sbjct 14960 CCAATCGAATCGATCTCATCGATAAAAATAACACATGGTGCTTTTTGTTTTGCGGTAGCA 14901
Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149
||||| || | ||||| ||||| |||||||| || || | || |||| ||
Sbjct 14900 AATAAATCCCGAACACGTTTAGCTCCTTGACCAACAAGAATCTCATCGAACTCAGGTCCG 14841
Query 289150 GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTA 289209
| |||| || | ||| ||||| || || || || | |||| |||||| ||
Sbjct 14840 GCAGTGTGAAAAAAAGGAACACCAGCTTCACCGGCGACAGCTCGAGCCAAAAGTGTTTTT 14781
Query 289210 CCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTA 289269
|| ||||| |||||||| | | ||||| || || || | |||| | || || | |
Sbjct 14780 CCGGTTCCTGGTGGTCCGACCAGGAGAACCCCTTTCGGAAGTTTTCCTCCTAGTGA-TGA 14722
Query 289270 TATTTCTCAGGGCTCTTT-AAAAATTCTACAATTTCC-TCAAGTTCATATTTTGCCTCAT 289327
| || | || | ||| ||||||||||||| |||| |||| ||| | || || ||||
Sbjct 14721 GAATTTTGTCGGATTTTTCAAAAATTCTACAACTTCCATCAA-TTCTTGCTTAGCTTCAT 14663
Query 289328 CA 289329
||
Sbjct 14662 CA 14661
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471461944475820
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |