Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq10223 168 2e-36 seq4298 147 6e-30 seq6917 86.0 2e-11 seq12816 84.2 6e-11 >seq10223 Length=44262 Score = 168 bits (186), Expect = 2e-36 Identities = 536/823 (65%), Gaps = 15/823 (2%) Strand=Plus/Plus Query 155631 TATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTA 155690 ||||| |||||||| ||| || ||||| | ||||||||||| | ||| || || ||| Sbjct 20896 TATTCAACAATCTCGGTGCAAAGATTAGAGCATTTGATGGTGCCAAGATTTTTTTGATTA 20955 Query 155691 GATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCG 155750 ||||| || |||||| ||| ||||| | ||| |||| ||||| || |||| ||| || Sbjct 20956 GATTTTCTATTACAATGATCTTTGTAGACCATGAATGGTGTTCCGGTTTCCACCTGAGCA 21015 Query 155751 TCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGAC 155810 || | || | ||| || ||||| || |||||| ||| |||| || | Sbjct 21016 TCGACTATTGCGAACCAAAGTTCACGAGCTGGAATTTGTTTGCGATATCGATTCTCTTTC 21075 Query 155811 TCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCAC 155870 ||||||||| ||| || | | | | || || || || ||| || |||||| || Sbjct 21076 TCATATTTCTCATAGAGAGCTTCGAATTCTTCGCCCCAAACATCTTGCAATCCAGGACAT 21135 Query 155871 TTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTAC---ACGCTCCATAAATACA 155927 | | |||||| | || |||||||| || || || | ||| | ||| || | | Sbjct 21136 TCTTTGGGGCACATCAACGACCAAACCCCAT---CGGTTTCGCAACGTTTCATGAACAAA 21192 Query 155928 TCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCC-GTGATT 155986 || ||| | ||||||||||| || || || | | || || ||| || || Sbjct 21193 TCCGGTATCCATAATGCATAGAAAAGATCTCTGGCACGTAATTCTTCTGAGCCAGTATTT 21252 Query 155987 C-TTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAA 156045 | || | | | ||| || || |||||| | ||| || |||| ||| || || | Sbjct 21253 CGTTTC--AAATTTAAAAAGTCGAAAATATCTGCATGCCACGGTTCCAAATATATTGCGA 21310 Query 156046 AACTACC---ATTCCTCTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACAC 156102 || ||| | | | || ||||| ||||| ||||| ||||| || | ||| | || | Sbjct 21311 AAGCACCAGGACGCTTATTACCACCTTGATCGACATAACGAGCGGTATCGTTGTAAACTC 21370 Query 156103 CTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATG 156162 | ||| |||| | |||||| ||| || ||||| || || | ||| ||| || Sbjct 21371 GCAACATCGGAACCAAACCATTTGAATGACCTTTGGTGCCAACTATGTACGATCCATTTG 21430 Query 156163 AGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATT 156222 |||| | ||||| || || || || ||||| | | || || || ||| |||| Sbjct 21431 CTCGAATACAATGAACATTAAGACCGATGCCACCGGCTGACTTCGATATAATAGCACATT 21490 Query 156223 CCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACG 156282 || | |||| | |||||||||||||| |||||| |||| | | || | | || | Sbjct 21491 GTTTCAACGTATCGTAAATACCTTCAATACTATCATCGGCCATCGTCAATAAAAAACATG 21550 Query 156283 AACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAAT-AAAA 156341 || | |||||| | | ||| |||| || || | ||||||| || || | |||| Sbjct 21551 AAGACATTTGAGGATGGGTTGTACCAGAATTAAACAAAGTAGGTGAGGCGTGTGTAAAAA 21610 Query 156342 TACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATA 156401 || | |||||||| || || ||||| | | |||| || || ||| Sbjct 21611 GACCT-TTAGACATTAGATTATACGTCTCGATGGCCGAATCAATATCTTCTTTATGTATA 21669 Query 156402 CAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAA 156444 | ||| | ||| |||||| |||||||||| || | || |||| Sbjct 21670 CCGATGGCGACTCTCATCAACATATGCTGTGGTCTTTCGACAA 21712 >seq4298 Length=5336 Score = 147 bits (162), Expect = 6e-30 Identities = 384/578 (66%), Gaps = 6/578 (1%) Strand=Plus/Plus Query 133070 AATAGGTTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAG 133129 ||| | |||||| |||| |||||| | || | || || ||| ||||||| || ||| | Sbjct 1406 AATCGATTTGTTTTGTTTCCAATTCAATACAAAGATATCTGGGAGATGTACAAGAAAGCG 1465 Query 133130 CAAGATTTATTTTGGACT-TCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACTGGGA 133188 | | | |||||||| || | ||||| |||||| || | || || ||| | Sbjct 1466 GAGGCATCGTTTTGGACAGTCGAA-GAAGTCGATTTAAGTCGCGATCTAGATCATTGGAA 1524 Query 133189 AGCCCTTACTGGGGATGAAAAACATTTTATTTCT-ATGATTTTAGCGTTTTTTGCTGCGA 133247 | | | | | ||||||||||||| || ||| ||| | ||||| || |||||||| | Sbjct 1525 CTCGTTGAATAAGAATGAAAAACATTTCATCTCTCATG-TGTTAGCATTCTTTGCTGCAA 1583 Query 133248 GTGATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCG 133307 ||||||| || ||| ||| ||| ||| || || || | || ||||| | | | Sbjct 1584 GTGATGGAATAGTTAATGAGAATCTAGCTGAGCGTTTCATTCGTGATGTTCAGATACCAG 1643 Query 133308 AAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATT 133367 | || || |||||||| | ||||| || || |||||||| || ||| | |||| Sbjct 1644 AGGCTCGATGTTTTTATGGATTTCAGATCGCCATCGAAAATATTCACTCTGAAATGTATT 1703 Query 133368 CTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCCA 133427 | || || |||| || || ||||||| ||| | || ||||| |||| Sbjct 1704 CGTTGCTCATCAATACCTATATAAAAGATAAATATGAGAGAGATTTTCTTTTCAATGCCA 1763 Query 133428 TTAGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACA 133487 || ||| |||||| | | |||||| | | |||||||| | ||||| || || Sbjct 1764 TTCAAACATTGCCTTGTGTCGAGAAGAAAGCGAAATGGGCTATCAGATGGACTCAAGATG 1823 Query 133488 AGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCA 133547 | | | || |||||| ||||| ||||| || |||| || || || || |||||| Sbjct 1824 ATAGAGTTAGCTTTGCTGAACGTCTTGTTGCGTTCGCTGCCGTCGAAGGAATCTTTTTCT 1883 Query 133548 GTGGTGCGTTCTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGT 133606 ||| |||| ||| |||| |||||||||||||| || || | | ||||| || | Sbjct 1884 CTGGCTCGTT-TGCGGCTATCTTTTGGCTTAAAAAACGAGGACTGATGCCTGGCTTGACT 1942 Query 133607 TTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCA 133644 || ||| ||| | || || | || || | |||||| Sbjct 1943 TTCAGTAATGAATTGATCTCGCGTGATGAAGGACTTCA 1980 >seq6917 Length=26946 Score = 86.0 bits (94), Expect = 2e-11 Identities = 160/232 (69%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 ||||| || | |||| |||||| || ||||| || || ||||||||||||||||||||| Sbjct 9020 GCACCATGAGCAATCTGACAATCTCGTTCCATCTCTCCAAAACGAAGACCACCATCGCGA 8961 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGT 251604 || ||||| || || || || ||| | || ||||| ||| | ||| Sbjct 8960 GCTCTACCTTCCATTGGTTGTCGGACTAGAATCTGCACTGGACCTCTGGCCCTTGAATGA 8901 Query 251605 TGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGATGCTC 251664 |||||| | ||||||||||| | |||||| || | | ||| || | ||| || | Sbjct 8900 ATCTTATCGTCCACCATATGCTTCAAACGCTGATAATAAGTGGGTCCTAGGAATAT--TT 8843 Query 251665 GAAGGCATTTG-CTCT----CCAGTTAGAGCGTTATACATAACTTCGTTTCC 251711 || || ||| || | ||||| |||| |||||||| ||||| | ||| Sbjct 8842 GA---CAATTGACTTTTCGGCCAGTATGAGCATTATACATCACTTCATATCC 8794 >seq12816 Length=32390 Score = 84.2 bits (92), Expect = 6e-11 Identities = 203/302 (67%), Gaps = 4/302 (1%) Strand=Plus/Minus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 |||| | ||| || || || || ||||| ||||| || | |||||| | || | ||| Sbjct 14960 CCAATCGAATCGATCTCATCGATAAAAATAACACATGGTGCTTTTTGTTTTGCGGTAGCA 14901 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 ||||| || | ||||| ||||| |||||||| || || | || |||| || Sbjct 14900 AATAAATCCCGAACACGTTTAGCTCCTTGACCAACAAGAATCTCATCGAACTCAGGTCCG 14841 Query 289150 GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTA 289209 | |||| || | ||| ||||| || || || || | |||| |||||| || Sbjct 14840 GCAGTGTGAAAAAAAGGAACACCAGCTTCACCGGCGACAGCTCGAGCCAAAAGTGTTTTT 14781 Query 289210 CCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTA 289269 || ||||| |||||||| | | ||||| || || || | |||| | || || | | Sbjct 14780 CCGGTTCCTGGTGGTCCGACCAGGAGAACCCCTTTCGGAAGTTTTCCTCCTAGTGA-TGA 14722 Query 289270 TATTTCTCAGGGCTCTTT-AAAAATTCTACAATTTCC-TCAAGTTCATATTTTGCCTCAT 289327 | || | || | ||| ||||||||||||| |||| |||| ||| | || || |||| Sbjct 14721 GAATTTTGTCGGATTTTTCAAAAATTCTACAACTTCCATCAA-TTCTTGCTTAGCTTCAT 14663 Query 289328 CA 289329 || Sbjct 14662 CA 14661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471461944475820