Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10]
18,860 sequences; 56,262,437 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq135 140 3e-28
seq718 131 2e-25
seq10223 105 6e-18
seq4581 96.9 3e-15
>seq135
Length=1279
Score = 140 bits (154), Expect = 3e-28
Identities = 160/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| || ||||||| | || || ||||| ||||| | ||||| ||| | ||
Sbjct 660 ATGCAGATTTTCGTTAAAACATTGACTGGAAAAACCATTACTTTGGAAGTTGAACCTTCC 719
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | |||| || ||| || || ||||| |||||||| || || || ||||||
Sbjct 720 GATACCATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGATCAA 779
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
||||||||||| ||||| || ||||| |||| ||| |||| || ||||| ||
Sbjct 780 CAACGTTTGATTTTTGCTGGCAAACAATTGGAAGATGGTAGAACATTGAGCGATTACAAT 839
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918
|||||||| ||||| || |||||||||| |||||
Sbjct 840 ATTCAAAAAGAATCCACTTTACACTTGGTATTGCG 874
Score = 132 bits (146), Expect = 4e-26
Identities = 163/219 (74%), Gaps = 8/219 (4%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| || | ||||| | || || ||||| || || | ||||| ||| | ||
Sbjct 204 ATGCAGATTTTCGTGAAAACATTGACTGGAAAAACAATCACTTTGGAAGTTGAACCTTCC 263
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | |||| || ||| || || || ||||||||||| || || || ||||||
Sbjct 264 GATACTATTGAAAATGTCAAAGCTAAAATACAGGACAAAGAAGGTATTCCACCAGATCAA 323
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCA--GATTA 24879
||||||||||| ||||| || ||||| |||| ||| ||| ||| | ||| |||||
Sbjct 324 CAACGTTTGATTTTTGCTGGTAAACAATTGGAAGATGGTCG---AAC-TCTCAGCGATTA 379
Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918
||| || ||||| ||||| || ||||||||||||||||
Sbjct 380 TAATATCCAAAAAGAATCCACTTTACACTTGGTGTTGCG 418
Score = 129 bits (142), Expect = 5e-25
Identities = 170/232 (73%), Gaps = 8/232 (3%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| ||| | ||||| | || || || || ||||| | ||||| ||| | ||
Sbjct 432 ATGCAGATTTTTGTCAAAACTTTGACTGGAAAGACCATTACTTTGGAAGTGGAACCTTCC 491
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | |||| || ||| || || ||||| |||||||| || ||||| |||||
Sbjct 492 GATACCATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAG 551
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAG--ATTA 24879
|||||| |||| ||||| || ||||| |||| ||| |||| || | |||| ||||
Sbjct 552 CAACGTCTGATTTTTGCTGGCAAACAATTGGAAGATGGTCGA---AC-TCTCAGCGATTA 607
Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931
||| || ||||| ||||| || | |||||||||||||| | || || |||
Sbjct 608 TAATATCCAAAAAGAATCTACTTTGCACTTGGTGTTGCGTCTCCGTGGTGGC 659
Score = 113 bits (124), Expect = 4e-20
Identities = 145/200 (73%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 24731 GGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAG 24790
|| |||||||| || | ||||| ||| | |||| || | |||| || ||| ||
Sbjct 3 GGAAAAACTATCACTTTGGAAGTGGAACCTTCCGATACGATTGAAAATGTCAAAGCTAAA 62
Query 24791 ATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAG 24850
|| |||||||||||||| || || || ||||||||||||||||| || || || |||||
Sbjct 63 ATTCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTTTGATTTTCGCTGGTAAACAA 122
Query 24851 CTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTG 24910
|||| ||| |||| || ||||| || || || || ||||| || | || |||
Sbjct 123 TTGGAAGATGGTAGAACATTGAGCGATTACAATATCCAGAAAGAATCCACTTTGCATTTG 182
Query 24911 GTGTTGCGATTGCGCGGAGG 24930
||||||||| | || || ||
Sbjct 183 GTGTTGCGACTCCGTGGTGG 202
>seq718
Length=674
Score = 131 bits (144), Expect = 2e-25
Identities = 170/231 (74%), Gaps = 8/231 (3%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| || | ||||| | || || ||||| ||||| | ||||| || | ||
Sbjct 46 ATGCAGATTTTCGTGAAAACTTTGACTGGAAAAACCATTACTTTGGAAGTTGAGCCTTCC 105
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | |||| || ||| || || |||||||||||||| || ||||| ||||||
Sbjct 106 GATACGATTGAAAATGTCAAAGCTAAAATTCAAGACAAAGAAGGTATTCCTCCAGATCAA 165
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCA--GATTA 24879
||||||||||| || || || ||||| |||| ||| ||| ||| | ||| |||||
Sbjct 166 CAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGTCG---AAC-TCTCAGCGATTA 221
Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
||| || ||||| ||||| || | || |||||||||||| | || || ||
Sbjct 222 TAATATCCAAAAAGAATCCACTTTGCATTTGGTGTTGCGACTCCGTGGTGG 272
Score = 127 bits (140), Expect = 2e-24
Identities = 164/223 (74%), Gaps = 9/223 (4%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| || ||||||| | || || ||||| || || | ||||| ||| | ||
Sbjct 274 ATGCAGATTTTCGTTAAAACTTTGACTGGAAAAACAATCACTTTGGAAGTTGAACCTTCC 333
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| ||| | |||| || ||| || || || ||||||||||| || || || ||||||
Sbjct 334 GATACAATTGAAAATGTCAAAGCTAAAATACAGGACAAAGAAGGTATTCCACCAGATCAA 393
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGA----GAAACATGTCA--G 24875
||||||||||| || || || ||||| |||| ||| |||| ||| | ||| |
Sbjct 394 CAACGTTTGATTTTCGCTGGCAAACAATTGGAAGATGGTCGAACTCNGAAC-TCTCAGCG 452
Query 24876 ATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918
||||||| || ||||| ||||| || | ||||||||||||||
Sbjct 453 ATTATAATATCCAAAAAGAATCTACTTTGCACTTGGTGTTGCG 495
Score = 87.8 bits (96), Expect = 2e-12
Identities = 113/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || || | ||||| | || || |||||||| || | ||||| || | ||
Sbjct 509 ATGCAAATTTTCGTGAAAACTTTGACTGGAAAAACTATCACTTTGGAAGTTGAGCCTTCC 568
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | |||| || ||| || || ||||| |||||||| || || || ||||||
Sbjct 569 GATACTATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGATCAA 628
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859
||||||||||| || || || ||||| |||| |||
Sbjct 629 CAACGTTTGATTTTCGCTGGCAAACAATTGGAAGAT 664
>seq10223
Length=44262
Score = 105 bits (116), Expect = 6e-18
Identities = 166/237 (70%), Gaps = 12/237 (5%)
Strand=Plus/Plus
Query 138150 AGATTTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACAT 138209
|| |||||| ||||| || | ||||||| || |||||| | || | |||||||||||
Sbjct 19859 AGTTTTATCCACAGTGAATTGAATGGCATTGGCCGCTGGTCTAGTACGTAGATAATACAT 19918
Query 138210 TCCCGTTTTTAACCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACGCGTAAGT 138269
||||||||| || |||||| |||| || | || ||||| || | | || |||
Sbjct 19919 TCCCGTTTTCAAACCATTTCGCCAGCAATAGAAATGCATCGATGTCATTTTGGCCATAGT 19978
Query 138270 CGGTTTCGCCAGAAATATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAAT 138329
| | || | | || || || |||||||| ||||||||||| || || ||||| |
Sbjct 19979 AGCCTCAGCGATATGAATATTCAAAGATTGACTTTGATCGATGAACGCACCACGATCTAC 20038
Query 138330 GGCCATGTTAATTAAATTTTTACTTTTC------ATCTCCCACACGGTCTTGTATAG 138380
||||| | | ||||| |||||| |||||||| ||||||||||| ||
Sbjct 20039 AGCCATCTCA--CAAATT----CTTTTCTGAGGGATCTCCCAAACGGTCTTGTAGAG 20089
>seq4581
Length=275
Score = 96.9 bits (106), Expect = 3e-15
Identities = 100/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847
|| |||||||| |||||||| || ||||| ||||| |||||| | || ||||| || |||
Sbjct 263 AAAATCCAAGATAAAGAAGGTATTCCTCCAGATCAGCAACGTCTAATTTTTGCTGGCAAA 204
Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907
|| |||| ||| |||| || |||||||||||||| || ||||| || | ||
Sbjct 203 CAATTGGAAGATGGTAGAACATTGAGCGATTATAACATTCAGAAAGAATCAACTTTGCAT 144
Query 24908 TTGGTGTTGCG 24918
||||| |||||
Sbjct 143 TTGGTATTGCG 133
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449791536640800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |