Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq135 140 3e-28 seq718 131 2e-25 seq10223 105 6e-18 seq4581 96.9 3e-15 >seq135 Length=1279 Score = 140 bits (154), Expect = 3e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || ||||||| | || || ||||| ||||| | ||||| ||| | || Sbjct 660 ATGCAGATTTTCGTTAAAACATTGACTGGAAAAACCATTACTTTGGAAGTTGAACCTTCC 719 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| || || ||||| |||||||| || || || |||||| Sbjct 720 GATACCATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGATCAA 779 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||| ||||| || ||||| |||| ||| |||| || ||||| || Sbjct 780 CAACGTTTGATTTTTGCTGGCAAACAATTGGAAGATGGTAGAACATTGAGCGATTACAAT 839 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 |||||||| ||||| || |||||||||| ||||| Sbjct 840 ATTCAAAAAGAATCCACTTTACACTTGGTATTGCG 874 Score = 132 bits (146), Expect = 4e-26 Identities = 163/219 (74%), Gaps = 8/219 (4%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | ||||| | || || ||||| || || | ||||| ||| | || Sbjct 204 ATGCAGATTTTCGTGAAAACATTGACTGGAAAAACAATCACTTTGGAAGTTGAACCTTCC 263 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| || || || ||||||||||| || || || |||||| Sbjct 264 GATACTATTGAAAATGTCAAAGCTAAAATACAGGACAAAGAAGGTATTCCACCAGATCAA 323 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCA--GATTA 24879 ||||||||||| ||||| || ||||| |||| ||| ||| ||| | ||| ||||| Sbjct 324 CAACGTTTGATTTTTGCTGGTAAACAATTGGAAGATGGTCG---AAC-TCTCAGCGATTA 379 Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||| || ||||| ||||| || |||||||||||||||| Sbjct 380 TAATATCCAAAAAGAATCCACTTTACACTTGGTGTTGCG 418 Score = 129 bits (142), Expect = 5e-25 Identities = 170/232 (73%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| | || || || || ||||| | ||||| ||| | || Sbjct 432 ATGCAGATTTTTGTCAAAACTTTGACTGGAAAGACCATTACTTTGGAAGTGGAACCTTCC 491 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| || || ||||| |||||||| || ||||| ||||| Sbjct 492 GATACCATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAG 551 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAG--ATTA 24879 |||||| |||| ||||| || ||||| |||| ||| |||| || | |||| |||| Sbjct 552 CAACGTCTGATTTTTGCTGGCAAACAATTGGAAGATGGTCGA---AC-TCTCAGCGATTA 607 Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||| || ||||| ||||| || | |||||||||||||| | || || ||| Sbjct 608 TAATATCCAAAAAGAATCTACTTTGCACTTGGTGTTGCGTCTCCGTGGTGGC 659 Score = 113 bits (124), Expect = 4e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 24731 GGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAG 24790 || |||||||| || | ||||| ||| | |||| || | |||| || ||| || Sbjct 3 GGAAAAACTATCACTTTGGAAGTGGAACCTTCCGATACGATTGAAAATGTCAAAGCTAAA 62 Query 24791 ATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAG 24850 || |||||||||||||| || || || ||||||||||||||||| || || || ||||| Sbjct 63 ATTCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTTTGATTTTCGCTGGTAAACAA 122 Query 24851 CTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTG 24910 |||| ||| |||| || ||||| || || || || ||||| || | || ||| Sbjct 123 TTGGAAGATGGTAGAACATTGAGCGATTACAATATCCAGAAAGAATCCACTTTGCATTTG 182 Query 24911 GTGTTGCGATTGCGCGGAGG 24930 ||||||||| | || || || Sbjct 183 GTGTTGCGACTCCGTGGTGG 202 >seq718 Length=674 Score = 131 bits (144), Expect = 2e-25 Identities = 170/231 (74%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | ||||| | || || ||||| ||||| | ||||| || | || Sbjct 46 ATGCAGATTTTCGTGAAAACTTTGACTGGAAAAACCATTACTTTGGAAGTTGAGCCTTCC 105 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| || || |||||||||||||| || ||||| |||||| Sbjct 106 GATACGATTGAAAATGTCAAAGCTAAAATTCAAGACAAAGAAGGTATTCCTCCAGATCAA 165 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCA--GATTA 24879 ||||||||||| || || || ||||| |||| ||| ||| ||| | ||| ||||| Sbjct 166 CAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGTCG---AAC-TCTCAGCGATTA 221 Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| ||||| || | || |||||||||||| | || || || Sbjct 222 TAATATCCAAAAAGAATCCACTTTGCATTTGGTGTTGCGACTCCGTGGTGG 272 Score = 127 bits (140), Expect = 2e-24 Identities = 164/223 (74%), Gaps = 9/223 (4%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || ||||||| | || || ||||| || || | ||||| ||| | || Sbjct 274 ATGCAGATTTTCGTTAAAACTTTGACTGGAAAAACAATCACTTTGGAAGTTGAACCTTCC 333 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | |||| || ||| || || || ||||||||||| || || || |||||| Sbjct 334 GATACAATTGAAAATGTCAAAGCTAAAATACAGGACAAAGAAGGTATTCCACCAGATCAA 393 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGA----GAAACATGTCA--G 24875 ||||||||||| || || || ||||| |||| ||| |||| ||| | ||| | Sbjct 394 CAACGTTTGATTTTCGCTGGCAAACAATTGGAAGATGGTCGAACTCNGAAC-TCTCAGCG 452 Query 24876 ATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||||||| || ||||| ||||| || | |||||||||||||| Sbjct 453 ATTATAATATCCAAAAAGAATCTACTTTGCACTTGGTGTTGCG 495 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | ||||| | || || |||||||| || | ||||| || | || Sbjct 509 ATGCAAATTTTCGTGAAAACTTTGACTGGAAAAACTATCACTTTGGAAGTTGAGCCTTCC 568 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| || || ||||| |||||||| || || || |||||| Sbjct 569 GATACTATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGATCAA 628 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 ||||||||||| || || || ||||| |||| ||| Sbjct 629 CAACGTTTGATTTTCGCTGGCAAACAATTGGAAGAT 664 >seq10223 Length=44262 Score = 105 bits (116), Expect = 6e-18 Identities = 166/237 (70%), Gaps = 12/237 (5%) Strand=Plus/Plus Query 138150 AGATTTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACAT 138209 || |||||| ||||| || | ||||||| || |||||| | || | ||||||||||| Sbjct 19859 AGTTTTATCCACAGTGAATTGAATGGCATTGGCCGCTGGTCTAGTACGTAGATAATACAT 19918 Query 138210 TCCCGTTTTTAACCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACGCGTAAGT 138269 ||||||||| || |||||| |||| || | || ||||| || | | || ||| Sbjct 19919 TCCCGTTTTCAAACCATTTCGCCAGCAATAGAAATGCATCGATGTCATTTTGGCCATAGT 19978 Query 138270 CGGTTTCGCCAGAAATATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAAT 138329 | | || | | || || || |||||||| ||||||||||| || || ||||| | Sbjct 19979 AGCCTCAGCGATATGAATATTCAAAGATTGACTTTGATCGATGAACGCACCACGATCTAC 20038 Query 138330 GGCCATGTTAATTAAATTTTTACTTTTC------ATCTCCCACACGGTCTTGTATAG 138380 ||||| | | ||||| |||||| |||||||| ||||||||||| || Sbjct 20039 AGCCATCTCA--CAAATT----CTTTTCTGAGGGATCTCCCAAACGGTCTTGTAGAG 20089 >seq4581 Length=275 Score = 96.9 bits (106), Expect = 3e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 || |||||||| |||||||| || ||||| ||||| |||||| | || ||||| || ||| Sbjct 263 AAAATCCAAGATAAAGAAGGTATTCCTCCAGATCAGCAACGTCTAATTTTTGCTGGCAAA 204 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 || |||| ||| |||| || |||||||||||||| || ||||| || | || Sbjct 203 CAATTGGAAGATGGTAGAACATTGAGCGATTATAACATTCAGAAAGAATCAACTTTGCAT 144 Query 24908 TTGGTGTTGCG 24918 ||||| ||||| Sbjct 143 TTGGTATTGCG 133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449791536640800