Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq135 179 6e-40 seq718 159 5e-34 >seq135 Length=1279 Score = 179 bits (198), Expect = 6e-40 Identities = 168/214 (79%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | |||||||| || |||||||| |||||| | || || |||| | || Sbjct 661 TGCAGATTTTCGTTAAAACATTGACTGGAAAAACCATTACTTTGGAAGTTGAACCTTCCG 720 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||| ||| |||||| ||| ||||||||| |||||||| ||||||| Sbjct 721 ATACCATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGATCAAC 780 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | |||||||| || |||||||| || ||| |||||| || | ||||| |||| Sbjct 781 AACGTTTGATTTTTGCTGGCAAACAATTGGAAGATGGTAGAACATTGAGCGATTACAATA 840 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | ||||||||||| ||| | || || ||||| || Sbjct 841 TTCAAAAAGAATCCACTTTACACTTGGTATTGCG 874 Score = 174 bits (192), Expect = 2e-38 Identities = 167/214 (78%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | |||||||| || ||||||||||| ||| | || || |||| | || Sbjct 205 TGCAGATTTTCGTGAAAACATTGACTGGAAAAACAATCACTTTGGAAGTTGAACCTTCCG 264 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| ||||||| ||| ||||||||| |||||||| |||||||| ||||||| Sbjct 265 ATACTATTGAAAATGTCAAAGCTAAAATACAGGACAAAGAAGGTATTCCACCAGATCAAC 324 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | |||||||| ||||||||||| || ||| | |||| | | |||||||||| Sbjct 325 AACGTTTGATTTTTGCTGGTAAACAATTGGAAGATGGTCGAACTCTCAGCGATTATAATA 384 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | ||||||||||| ||| | || || || || || Sbjct 385 TCCAAAAAGAATCCACTTTACACTTGGTGTTGCG 418 Score = 152 bits (168), Expect = 8e-32 Identities = 162/214 (76%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| || || ||||| || |||||| | || || |||| | || Sbjct 433 TGCAGATTTTTGTCAAAACTTTGACTGGAAAGACCATTACTTTGGAAGTGGAACCTTCCG 492 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||| ||| |||||| ||| ||||||||| ||||| || ||||| | Sbjct 493 ATACCATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAGC 552 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | || |||||||| || |||||||| || ||| | |||| | | |||||||||| Sbjct 553 AACGTCTGATTTTTGCTGGCAAACAATTGGAAGATGGTCGAACTCTCAGCGATTATAATA 612 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | ||||||||||| ||| | || || || || || Sbjct 613 TCCAAAAAGAATCTACTTTGCACTTGGTGTTGCG 646 Score = 149 bits (164), Expect = 1e-30 Identities = 154/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 146058 GGAAAAACAATTACTATTGATGTAGAACATAACGATACTATTCAAAATGTAAAAAATAAA 146117 |||||||| || ||| | || || |||| | |||||| ||| ||||||| ||| |||| Sbjct 3 GGAAAAACTATCACTTTGGAAGTGGAACCTTCCGATACGATTGAAAATGTCAAAGCTAAA 62 Query 146118 ATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAA 146177 || ||| |||||||| |||||||| ||||||||| | | ||||| || ||||||||| Sbjct 63 ATTCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTTTGATTTTCGCTGGTAAACAA 122 Query 146178 TTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTA 146237 || || ||| |||||| || | ||||| ||||| || |||||||| ||| | ||||| Sbjct 123 TTGGAAGATGGTAGAACATTGAGCGATTACAATATCCAGAAAGAATCCACTTTGCATTTG 182 Query 146238 GTATTACGATTAAGAGGAGGTA 146259 || || ||| | | || |||| Sbjct 183 GTGTTGCGACTCCGTGGTGGTA 204 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 146132 AGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAG 146191 ||| ||||| || ||||| ||| | | |||||||| ||||||||||| || ||| || Sbjct 1040 AGGTATTCCGCCAGATCAGCAACGTTTGATTTTTGCTGGTAAACAATTGGAAGATGGCAG 1099 Query 146192 AACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAG 146251 ||| || | ||||| ||||| || |||||||| ||| | ||||| || || ||| | | Sbjct 1100 AACATTGAGCGATTACAATATCCAGAAAGAATCCACTTTGCATTTGGTGTTGCGACTCCG 1159 Query 146252 AGGAGGTA 146259 || |||| Sbjct 1160 TGGTGGTA 1167 >seq718 Length=674 Score = 159 bits (176), Expect = 5e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | ||||| || || |||||||| |||||| | || || || | | || Sbjct 47 TGCAGATTTTCGTGAAAACTTTGACTGGAAAAACCATTACTTTGGAAGTTGAGCCTTCCG 106 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||| ||| |||||| ||| |||||||| ||||| || ||||||| Sbjct 107 ATACGATTGAAAATGTCAAAGCTAAAATTCAAGACAAAGAAGGTATTCCTCCAGATCAAC 166 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | ||||| || ||||||||||| || ||| | |||| | | |||||||||| Sbjct 167 AACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGTCGAACTCTCAGCGATTATAATA 226 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| ||| | ||||| || || ||| | | || |||| Sbjct 227 TCCAAAAAGAATCCACTTTGCATTTGGTGTTGCGACTCCGTGGTGGTA 274 Score = 140 bits (154), Expect = 5e-28 Identities = 164/221 (74%), Gaps = 7/221 (3%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | ||||| || || ||||||||||| ||| | || || |||| | || Sbjct 275 TGCAGATTTTCGTTAAAACTTTGACTGGAAAAACAATCACTTTGGAAGTTGAACCTTCCG 334 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||| ||| ||||||||| |||||||| |||||||| ||||||| Sbjct 335 ATACAATTGAAAATGTCAAAGCTAAAATACAGGACAAAGAAGGTATTCCACCAGATCAAC 394 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGAT-----AA--TAGAACGTTAACAGAT 146204 || | | ||||| || || |||||||| || ||| || |||| | | ||| Sbjct 395 AACGTTTGATTTTCGCTGGCAAACAATTGGAAGATGGTCGAACTCNGAACTCTCAGCGAT 454 Query 146205 TATAATATACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 |||||||| ||||||||||| ||| | || || || || || Sbjct 455 TATAATATCCAAAAAGAATCTACTTTGCACTTGGTGTTGCG 495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785981061271200