Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq135 167 2e-36 seq718 158 9e-34 seq4581 107 1e-18 seq620 87.8 1e-12 >seq135 Length=1279 Score = 167 bits (184), Expect = 2e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || |||| | ||||| |||||| || | |||||||||||||| || |||||||| Sbjct 430 CCACCCCGGAGACGCAACACCAAGTGTAAAGTGGATTCTTTTTGGATATTATAATCGCTG 371 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || ||| ||| || | |||||| |||||| | ||||| | ||| ||||| || ||| Sbjct 370 AGAGTTCGACCATCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 311 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||| |||||||| |||| ||| ||||||| |||| | ||| || ||| |||| ||| Sbjct 310 ATACCTTCTTTGTCCTGTATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGTTCAACT 251 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | ||| || ||||| ||||| || ||||| || || |||||||| Sbjct 250 TCCAAAGTGATTGTTTTTCCAGTCAATGTTTTCACGAAAATCTGCAT 204 Score = 167 bits (184), Expect = 2e-36 Identities = 171/218 (78%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAG 29629 ||||| ||||| || | ||||||||||||||||| || ||||| | ||||| | | | Sbjct 875 ACGCAATACCAAGTGTAAAGTGGATTCTTTTTGAATATTGTAATCGCTCAATGTT-CTAC 817 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 ||| || | ||||||||||||| | ||||| | ||| ||||| || |||||||| |||| Sbjct 816 CATCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTT 757 Query 29690 TGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTT 29748 | ||||| |||||| | ||||||| |||| | || || ||| |||| ||||| | ||| Sbjct 756 TATCTTG-AATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCAACTTCCAAAGTA 698 Query 29749 ATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| ||||| || |||||||| || |||||||| Sbjct 697 ATGGTTTTTCCAGTCAATGTTTTAACGAAAATCTGCAT 660 Score = 159 bits (176), Expect = 3e-34 Identities = 167/217 (77%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| |||||| || | || ||||||||||| || |||||||| | || ||| Sbjct 647 ACGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACC 588 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | ||||||||||||| | |||| | ||||||||| || |||||||| ||||| Sbjct 587 ATCTTCCAATTGTTTGCCAGCAAAAATCAGACGTTGCTGATCTGGAGGAATACCTTCTTT 528 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||| |||||| | ||||||| |||| | || || ||| |||| ||||| | ||| | Sbjct 527 ATCTTG-AATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCCACTTCCAAAGTAA 469 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || ||||| || ||||| ||||| |||||||| Sbjct 468 TGGTCTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 432 Score = 138 bits (152), Expect = 9e-28 Identities = 149/192 (78%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAGA 29630 |||| ||||||||| | ||||||||||| || || || ||||| | ||||| | | | Sbjct 190 CGCAACACCAAATGCAAAGTGGATTCTTTCTGGATATTGTAATCGCTCAATGTT-CTACC 132 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | |||||| ||||| | ||||| | ||| ||||| || |||||||| ||||| Sbjct 131 ATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTT 72 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| |||||| | ||||||| |||| | || || ||| |||| ||||| | ||| | Sbjct 71 GTCTTG-AATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGTTCCACTTCCAAAGTGA 13 Query 29750 TAGTTTTGCCAG 29761 ||||||| |||| Sbjct 12 TAGTTTTTCCAG 1 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAGA 29630 |||| ||||||||| | ||||||||||| || || || ||||| | ||||| | | | Sbjct 1153 CGCAACACCAAATGCAAAGTGGATTCTTTCTGGATATTGTAATCGCTCAATGTTCTGCCA 1094 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACC 29684 || || | |||||| |||||| | ||||| | ||||||||| ||||||||||| Sbjct 1093 -TCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGCTGATCTGGCGGAATACC 1041 >seq718 Length=674 Score = 158 bits (174), Expect = 9e-34 Identities = 166/216 (77%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 |||| ||||||||| | |||||||||||||| || |||||||| | || ||| | Sbjct 260 CGCAACACCAAATGCAAAGTGGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCA 201 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || | |||||| ||||| | ||||| | ||| ||||| || |||||||| |||||| Sbjct 200 TCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTG 141 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| |||||| | ||||||| |||| | || || ||| | || ||||| | ||| || Sbjct 140 TCTTG-AATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGCTCAACTTCCAAAGTAAT 82 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| ||||| || ||||| || || |||||||| Sbjct 81 GGTTTTTCCAGTCAAAGTTTTCACGAAAATCTGCAT 46 Score = 147 bits (162), Expect = 2e-30 Identities = 167/223 (75%), Gaps = 7/223 (3%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATG------G 29623 ||||| |||||| || | || ||||||||||| || |||||||| | | | | Sbjct 496 ACGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTGAGAGTTCNGAG 437 Query 29624 TGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATAC 29683 | ||| ||| || | |||||||||||| | ||||| | ||| ||||| || ||||||| Sbjct 436 TTCGACCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATAC 377 Query 29684 CCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAA 29743 | |||||||| |||| ||| ||||||| |||| | || || ||| |||| ||||| | Sbjct 376 CTTCTTTGTCCTGTATTTTAGCTTTGACATTTTCAATTGTATCGGAAGGTTCAACTTCCA 317 Query 29744 GAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| || ||||| ||||| || |||||||| || |||||||| Sbjct 316 AAGTGATTGTTTTTCCAGTCAAAGTTTTAACGAAAATCTGCAT 274 Score = 123 bits (136), Expect = 2e-23 Identities = 128/165 (78%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 29623 GTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATA 29682 || ||| ||| || | |||||||||||| | ||||| | ||| ||||| || |||||| Sbjct 672 GTTCGACCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATA 613 Query 29683 CCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTC 29741 || ||||| ||||| |||||| | ||||||| |||| | ||| || ||| | || ||||| Sbjct 612 CCTTCTTTATCTTG-AATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGCTCAACTTC 554 Query 29742 AAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||| |||||||| ||||| || ||||| || || || ||||| Sbjct 553 CAAAGTGATAGTTTTTCCAGTCAAAGTTTTCACGAAAATTTGCAT 509 >seq4581 Length=275 Score = 107 bits (118), Expect = 1e-18 Identities = 111/143 (78%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAG 29629 ||||| |||||||| | || |||||||| |||||||||||||| | |||| || | | Sbjct 132 ACGCAATACCAAATGCAAAGTTGATTCTTTCTGAATGTTATAATCGCTCAAT-GTTCTAC 190 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 ||| || | ||||||||||||| | || | | ||||||||| || |||||||| |||| Sbjct 191 CATCTTCCAATTGTTTGCCAGCAAAAATTAGACGTTGCTGATCTGGAGGAATACCTTCTT 250 Query 29690 TGTCTTGTAATTTTTGTTTGACA 29712 | ||||| | ||| ||||||| Sbjct 251 TATCTTGGATTTTAGCTTTGACA 273 >seq620 Length=8710 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/110 (79%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 29681 TACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||| ||||||||||| ||| || | |||||| |||| | || || ||| |||| ||| Sbjct 8391 TACCTTCTTTGTCTTG-AATCTTAGCTTTGACGTTTTCAATTGTATCGGAAGGTTCCACT 8333 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || | ||| |||||||| ||||| || ||||||||||| || ||||| || Sbjct 8332 TCCAAAGTGATAGTTTTTCCAGTCAAAGTTTTAACAAAAATTTGCATCTT 8283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385130654959260