Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq6148 82.4 1e-10 >seq6148 Length=42148 Score = 82.4 bits (90), Expect = 1e-10 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 168523 TTAAAGAACTTTTATGGGTTATAAAAGGTTCAACTGATTCAAAACAATTAAATGATATAG 168582 || |||| ||| | ||| | || || ||||||||||| ||| || | | | | Sbjct 25329 TTGAAGAGCTTCTCTGGTTCATTCGTGGCTCAACTGATTCGAAAGAACTTTCGAAAAAAA 25388 Query 168583 GTGTTAAAGTTTGGAACGATAATGGTTCTCGTGAATTTTTAGATTTATGTGGTTTTACCG 168642 ||| ||| | ||| ||| || ||||| | |||||| | |||| ||| || | || Sbjct 25389 ATGTCAAAATATGGGACGCAAACGGTTCGAGAGAATTTCTCGATTCTCTTGGCTTCAACG 25448 Query 168643 AAAGAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGAGCTC 168702 | ||| ||||||| ||| | || ||| ||||||| ||||||||| | ||| || || Sbjct 25449 ATAGAGAAGAAGGAGATCTCGGACCAGTTTATGGCTTTCAATGGCGCCATTTCGGTGCAG 25508 Query 168703 AATATATTGACTGTGATACAGATTACACCGGACAAGGAGTAGACCAATTA 168752 ||||| ||||| | | ||||| |||||||| || || ||| || Sbjct 25509 AATATGTTGACAAGAACGCTGATTATGAGGGACAAGGTGTCGATCAACTA 25558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635027856880800