Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq135 141 9e-29 seq718 131 2e-25 seq4581 111 2e-19 >seq135 Length=1279 Score = 141 bits (156), Expect = 9e-29 Identities = 171/231 (74%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | |||||| || || || | |||||||||||||| || || |||||||| Sbjct 659 GCCACCACGGAGACGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCT 600 Query 137244 CATTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 137301 | || |||| ||||| | |||||| |||||| | ||||||||||||||||| ||| Sbjct 599 GAGAGT--TCGACCATCTTCCAATTGTTTGCCAGCAAAAATCAGACGTTGCTGATCTGGA 542 Query 137302 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCT 137361 || || |||||||| || |||||| ||| | | ||| | || || | ||||| Sbjct 541 GGAATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCC 482 Query 137362 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 ||||| | ||| | ||||| || ||||| ||||| || || || |||||| Sbjct 481 ACTTCCAAAGTAATGGTCTTTCCAGTCAAAGTTTTGACAAAAATCTGCATA 431 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | |||||| || || || | || ||||||||||| || |||||||||||| Sbjct 886 CCACCACGGAGACGCAATACCAAGTGTAAAGTGGATTCTTTTTGAATATTGTAATCGCTC 827 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| || ||||| | |||||| |||||| | |||| |||||| ||||| || || Sbjct 826 AATGTTCTACCATCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 767 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || |||||||| || |||||| ||| | | ||| | || || | ||||| ||| Sbjct 766 ATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCAACT 707 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | || || || ||||||||||| ||||| || ||||| Sbjct 706 TCCAAAGTAATGGTTTTTCCAGTCAATGTTTTAACGAAAATCTGCAT 660 Score = 131 bits (144), Expect = 2e-25 Identities = 168/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | |||||| || || || | || ||||||||||| || || |||||||| Sbjct 430 CCACCCCGGAGACGCAACACCAAGTGTAAAGTGGATTCTTTTTGGATATTATAATCGCTG 371 Query 137245 ATTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 137302 | || |||| ||||| | ||||||||||||| | |||| |||||| ||||| || | Sbjct 370 AGAGT--TCGACCATCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTG 313 Query 137303 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTA 137362 | || ||||||||||| ||||| ||| | | ||| | || || | ||||| | Sbjct 312 GAATACCTTCTTTGTCCTGTATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGTTCAA 253 Query 137363 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 |||| | ||| | || || || ||||||||||| ||||| || |||||| Sbjct 252 CTTCCAAAGTGATTGTTTTTCCAGTCAATGTTTTCACGAAAATCTGCATA 203 Score = 114 bits (126), Expect = 1e-20 Identities = 131/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 137197 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 137256 ||||| || ||||| | || |||||||| || || ||||||||||||| ||| || Sbjct 190 CGCAACACCAAATGCAAAGTGGATTCTTTCTGGATATTGTAATCGCTCAATGTTCTACCA 131 Query 137257 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 137316 ||||| | |||||||||||| | |||| |||||| ||||| || || || ||||||||| Sbjct 130 TCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTG 71 Query 137317 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGT 137372 || |||||| ||| | | ||| | ||| || | ||||| ||||| | ||| Sbjct 70 TCTTGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGTTCCACTTCCAAAGT 15 Score = 98.7 bits (108), Expect = 1e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 137197 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 137256 ||||| || ||||| | || |||||||| || || ||||||||||||| ||| || Sbjct 1153 CGCAACACCAAATGCAAAGTGGATTCTTTCTGGATATTGTAATCGCTCAATGTTCTGCCA 1094 Query 137257 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCT 137310 ||||| | ||||||||||||| | |||| |||||||||||| || || || ||| Sbjct 1093 TCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGCTGATCTGGCGGAATACCT 1040 >seq718 Length=674 Score = 131 bits (144), Expect = 2e-25 Identities = 161/218 (74%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 137197 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 137256 ||||| || ||||| | || ||||||||||| || || |||||||| | || |||| Sbjct 260 CGCAACACCAAATGCAAAGTGGATTCTTTTTGGATATTATAATCGCTGAGAGT--TCGAC 203 Query 137257 --TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTT 137314 ||||| | |||||||||||| | |||| |||||| ||||| ||||| || ||||||| Sbjct 202 CATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCTT 143 Query 137315 TGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCA 137374 |||| |||||| ||| | | ||| | ||| || | || || ||||| | ||| | Sbjct 142 TGTCTTGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGCTCAACTTCCAAAGTAA 83 Query 137375 CCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || || || ||||| ||||| ||||| || |||||| Sbjct 82 TGGTTTTTCCAGTCAAAGTTTTCACGAAAATCTGCATA 45 Score = 114 bits (126), Expect = 1e-20 Identities = 167/235 (71%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | |||||| || || || | |||||||||||||| || || |||||||| Sbjct 507 CCACCACGGAGACGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTG 448 Query 137245 ATTGTGC-----TCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATC 137297 | || | |||| ||||| | |||||| ||||| | |||| |||||| ||||| Sbjct 447 AGAGTTCNGAGTTCGACCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATC 388 Query 137298 GGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGG 137357 || || || ||||||||||| ||||| ||| | | ||| | || || | || Sbjct 387 TGGTGGAATACCTTCTTTGTCCTGTATTTTAGCTTTGACATTTTCAATTGTATCGGAAGG 328 Query 137358 TTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 ||| ||||| | ||| | || || || ||||| ||||| ||||| || |||||| Sbjct 327 TTCAACTTCCAAAGTGATTGTTTTTCCAGTCAAAGTTTTAACGAAAATCTGCATA 273 >seq4581 Length=275 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | |||||| || ||||| | || |||||||| || ||||| ||||||||| Sbjct 121 CCACCACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTCTGAATGTTATAATCGCTC 180 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| || ||||| | |||||| |||||| | || |||||||||||||| ||||| Sbjct 181 AATGTTCTACCATCTTCCAATTGTTTGCCAGCAAAAATTAGACGTTGCTGATCTGGAGGA 240 Query 137305 ATGCCTTCTTTGTC 137318 || |||||||| || Sbjct 241 ATACCTTCTTTATC 254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488428825752000