Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10]
18,860 sequences; 56,262,437 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq135 210 4e-49
seq718 181 2e-40
seq4581 125 1e-23
seq620 107 4e-18
>seq135
Length=1279
Score = 210 bits (232), Expect = 4e-49
Identities = 176/216 (81%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
||||| || ||||||| |||||||||||| || ||||||||||| ||| ||| |||
Sbjct 647 ACGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACC 588
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
||||| | |||||| |||||||| || || | ||| ||||||||||| || ||||| ||
Sbjct 587 ATCTTCCAATTGTTTGCCAGCAAAAATCAGACGTTGCTGATCTGGAGGAATACCTTCTTT 528
Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774
||||||||| || ||||| ||||||||||| ||||| |||||| ||||||||||| ||
Sbjct 527 ATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCCACTTCCAAAGTAAT 468
Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||| || ||||| || || ||||| ||||||||
Sbjct 467 GGTCTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 432
Score = 179 bits (198), Expect = 7e-40
Identities = 177/229 (77%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | | ||||| || ||||| | ||| |||||||| || ||||| |||||
Sbjct 888 TACCACCACGGAGACGCAATACCAAGTGTAAAGTGGATTCTTTTTGAATATTGTAATCGC 829
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| ||||||| ||||| | |||||| |||||||| || | | |||||||||||| |
Sbjct 828 TCAATGTTCTACCATCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTG 769
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || ||||| ||||||||||| || ||||| ||||||||||| ||||| |||||| |
Sbjct 768 GAATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCAA 709
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||||||||| || || || || ||||| || || || || ||||||||
Sbjct 708 CTTCCAAAGTAATGGTTTTTCCAGTCAATGTTTTAACGAAAATCTGCAT 660
Score = 174 bits (192), Expect = 3e-38
Identities = 176/229 (77%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | | ||||| || ||||| | ||| |||||||| || |||||||||||
Sbjct 432 TACCACCCCGGAGACGCAACACCAAGTGTAAAGTGGATTCTTTTTGGATATTATAATCGC 373
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
||| ||| ||| ||||| | |||||| |||||||| || | | |||||||||||| |
Sbjct 372 TGAGAGTTCGACCATCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTG 313
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || ||||| || || || || || ||||| ||||||||||| ||||| |||||| |
Sbjct 312 GAATACCTTCTTTGTCCTGTATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGTTCAA 253
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||||||||| || || || || ||||| || || || || ||||||||
Sbjct 252 CTTCCAAAGTGATTGTTTTTCCAGTCAATGTTTTCACGAAAATCTGCAT 204
Score = 154 bits (170), Expect = 3e-32
Identities = 147/188 (78%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|||| || || |||| ||| ||||||||||| ||||| ||||| | |||||||
Sbjct 190 CGCAACACCAAATGCAAAGTGGATTCTTTCTGGATATTGTAATCGCTCAATGTTCTACCA 131
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
||||| | |||||| ||||| || || | | |||||||||||| || || ||||| ||
Sbjct 130 TCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTG 71
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775
|||||||| || ||||| ||||||||||||||||| |||||| ||||||||||| ||
Sbjct 70 TCTTGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGTTCCACTTCCAAAGTGATA 11
Query 82776 GTCTTGCC 82783
|| || ||
Sbjct 10 GTTTTTCC 3
Score = 89.7 bits (98), Expect = 1e-12
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766
||||| || || || || || ||||| ||||||||||| ||||| ||| || ||||||
Sbjct 991 CCTTCTTTGTCCTGTATTTTAGCTTTGACATTTTCAATTGTATCGGAAGGCTCAACTTCC 932
Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||| || || || || ||||| || || ||||| ||||||||
Sbjct 931 AAAGTAATAGTTTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 888
Score = 87.8 bits (96), Expect = 4e-12
Identities = 87/113 (77%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 82698 GGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT 82757
||||| |||||||| || || || || || ||||| || |||||||| ||||| |||
Sbjct 1279 GGAGGAATTCCTTCTTTGTCATGGATTTTAGCTTTAACGTTTTCAATTGTATCGGAAGGC 1220
Query 82758 TCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| ||||||||||| || || || || ||||| || || || || || |||||
Sbjct 1219 TCAACTTCCAAAGTAATAGTTTTTCCAGTCAAAGTTTTCACGAAAATTTGCAT 1167
>seq718
Length=674
Score = 181 bits (200), Expect = 2e-40
Identities = 169/215 (79%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|||| || || |||| ||| |||||||| || ||||||||||| ||| ||| |||
Sbjct 260 CGCAACACCAAATGCAAAGTGGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCA 201
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
||||| | |||||| ||||| || || | | ||||||||||||||| || ||||| ||
Sbjct 200 TCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTG 141
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775
|||||||| || ||||| ||||||||||||||||| ||| || ||||||||||| ||
Sbjct 140 TCTTGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGCTCAACTTCCAAAGTAATG 81
Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| || || ||||| || || || || ||||||||
Sbjct 80 GTTTTTCCAGTCAAAGTTTTCACGAAAATCTGCAT 46
Score = 167 bits (184), Expect = 5e-36
Identities = 179/236 (76%), Gaps = 7/236 (3%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATC-- 82639
|||| || | | ||||| || ||||||| |||||||||||| || |||||||||||
Sbjct 509 TACCACCACGGAGACGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGC 450
Query 82640 ----AGAT-AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGA 82694
|| | || ||| ||| ||||| | |||||| ||||| || || | | |||||||
Sbjct 449 TGAGAGTTCNGAGTTCGACCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGA 390
Query 82695 TCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTA 82754
||||| || || ||||| || || || || || ||||| ||||||||||| ||||| |
Sbjct 389 TCTGGTGGAATACCTTCTTTGTCCTGTATTTTAGCTTTGACATTTTCAATTGTATCGGAA 330
Query 82755 GGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||| ||||||||||| || || || || ||||| || || || || ||||||||
Sbjct 329 GGTTCAACTTCCAAAGTGATTGTTTTTCCAGTCAAAGTTTTAACGAAAATCTGCAT 274
Score = 138 bits (152), Expect = 2e-27
Identities = 130/166 (78%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 82645 GAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTA 82704
|| ||| ||| ||||| | |||||| ||||| || || | | |||||||||||| || |
Sbjct 674 GAGTTCGACCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAA 615
Query 82705 TTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTT 82764
| ||||| ||||||||||| || ||||| ||||||||||| ||||| ||| || ||||
Sbjct 614 TACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGCTCAACTT 555
Query 82765 CCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||||| || || || || ||||| || || || || || |||||
Sbjct 554 CCAAAGTGATAGTTTTTCCAGTCAAAGTTTTCACGAAAATTTGCAT 509
>seq4581
Length=275
Score = 125 bits (138), Expect = 1e-23
Identities = 122/157 (78%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | | ||||| || || |||| ||| ||||||||||| || ||||||||
Sbjct 119 TACCACCACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTCTGAATGTTATAATCGC 178
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| ||||||| ||||| | |||||| |||||||| ||||| | ||| ||||||||||
Sbjct 179 TCAATGTTCTACCATCTTCCAATTGTTTGCCAGCAAAAATTAGACGTTGCTGATCTGGAG 238
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATT 82738
| || ||||| |||||||| || || ||||| |||||
Sbjct 239 GAATACCTTCTTTATCTTGGATTTTAGCTTTGACATT 275
Score = 93.3 bits (102), Expect = 8e-14
Identities = 83/104 (80%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766
||||| || || || || || ||||| || |||||||||||||| |||||| ||||||
Sbjct 16 CCTTCTTTGTCCTGTATTTTAGCTTTGACGTTTTCAATCGTATCGGAAGGTTCAACTTCC 75
Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| || || ||||| || ||||| || || ||||| ||||||||
Sbjct 76 AAGGTAATGGTCTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 119
>seq620
Length=8710
Score = 107 bits (118), Expect = 4e-18
Identities = 88/107 (82%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| ||||| ||||||||||| || ||||| ||||||||||| ||||| |||||| |||
Sbjct 8708 ATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCCACT 8649
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||||||| || || || || ||||| || || ||||| ||||||||
Sbjct 8648 TCCAAAGTGATAGTTTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 8602
Score = 98.7 bits (108), Expect = 2e-15
Identities = 84/104 (81%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766
||||| || ||||||||||| ||||| || |||||||| ||||| |||||| ||||||
Sbjct 8389 CCTTCTTTGTCTTGAATCTTAGCTTTGACGTTTTCAATTGTATCGGAAGGTTCCACTTCC 8330
Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||| || || || || ||||| || || ||||| || |||||
Sbjct 8329 AAAGTGATAGTTTTTCCAGTCAAAGTTTTAACAAAAATTTGCAT 8286
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981589947593540
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |