Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq135 210 4e-49 seq718 181 2e-40 seq4581 125 1e-23 seq620 107 4e-18 >seq135 Length=1279 Score = 210 bits (232), Expect = 4e-49 Identities = 176/216 (81%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||||| || ||||||| |||||||||||| || ||||||||||| ||| ||| ||| Sbjct 647 ACGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACC 588 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| | |||||| |||||||| || || | ||| ||||||||||| || ||||| || Sbjct 587 ATCTTCCAATTGTTTGCCAGCAAAAATCAGACGTTGCTGATCTGGAGGAATACCTTCTTT 528 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||||||| || ||||| ||||||||||| ||||| |||||| ||||||||||| || Sbjct 527 ATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCCACTTCCAAAGTAAT 468 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || ||||| || || ||||| |||||||| Sbjct 467 GGTCTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 432 Score = 179 bits (198), Expect = 7e-40 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||||| || ||||| | ||| |||||||| || ||||| ||||| Sbjct 888 TACCACCACGGAGACGCAATACCAAGTGTAAAGTGGATTCTTTTTGAATATTGTAATCGC 829 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||||||| ||||| | |||||| |||||||| || | | |||||||||||| | Sbjct 828 TCAATGTTCTACCATCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTG 769 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| ||||||||||| || ||||| ||||||||||| ||||| |||||| | Sbjct 768 GAATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCAA 709 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||||| || || || || ||||| || || || || |||||||| Sbjct 708 CTTCCAAAGTAATGGTTTTTCCAGTCAATGTTTTAACGAAAATCTGCAT 660 Score = 174 bits (192), Expect = 3e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||||| || ||||| | ||| |||||||| || ||||||||||| Sbjct 432 TACCACCCCGGAGACGCAACACCAAGTGTAAAGTGGATTCTTTTTGGATATTATAATCGC 373 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| ||| ||| ||||| | |||||| |||||||| || | | |||||||||||| | Sbjct 372 TGAGAGTTCGACCATCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTG 313 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| || || || || || ||||| ||||||||||| ||||| |||||| | Sbjct 312 GAATACCTTCTTTGTCCTGTATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGTTCAA 253 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||||| || || || || ||||| || || || || |||||||| Sbjct 252 CTTCCAAAGTGATTGTTTTTCCAGTCAATGTTTTCACGAAAATCTGCAT 204 Score = 154 bits (170), Expect = 3e-32 Identities = 147/188 (78%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 |||| || || |||| ||| ||||||||||| ||||| ||||| | ||||||| Sbjct 190 CGCAACACCAAATGCAAAGTGGATTCTTTCTGGATATTGTAATCGCTCAATGTTCTACCA 131 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| | |||||| ||||| || || | | |||||||||||| || || ||||| || Sbjct 130 TCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTG 71 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 |||||||| || ||||| ||||||||||||||||| |||||| ||||||||||| || Sbjct 70 TCTTGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGTTCCACTTCCAAAGTGATA 11 Query 82776 GTCTTGCC 82783 || || || Sbjct 10 GTTTTTCC 3 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 ||||| || || || || || ||||| ||||||||||| ||||| ||| || |||||| Sbjct 991 CCTTCTTTGTCCTGTATTTTAGCTTTGACATTTTCAATTGTATCGGAAGGCTCAACTTCC 932 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || || || ||||| || || ||||| |||||||| Sbjct 931 AAAGTAATAGTTTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 888 Score = 87.8 bits (96), Expect = 4e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 82698 GGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT 82757 ||||| |||||||| || || || || || ||||| || |||||||| ||||| ||| Sbjct 1279 GGAGGAATTCCTTCTTTGTCATGGATTTTAGCTTTAACGTTTTCAATTGTATCGGAAGGC 1220 Query 82758 TCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||||||||| || || || || ||||| || || || || || ||||| Sbjct 1219 TCAACTTCCAAAGTAATAGTTTTTCCAGTCAAAGTTTTCACGAAAATTTGCAT 1167 >seq718 Length=674 Score = 181 bits (200), Expect = 2e-40 Identities = 169/215 (79%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 |||| || || |||| ||| |||||||| || ||||||||||| ||| ||| ||| Sbjct 260 CGCAACACCAAATGCAAAGTGGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCA 201 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| | |||||| ||||| || || | | ||||||||||||||| || ||||| || Sbjct 200 TCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTG 141 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 |||||||| || ||||| ||||||||||||||||| ||| || ||||||||||| || Sbjct 140 TCTTGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGCTCAACTTCCAAAGTAATG 81 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || ||||| || || || || |||||||| Sbjct 80 GTTTTTCCAGTCAAAGTTTTCACGAAAATCTGCAT 46 Score = 167 bits (184), Expect = 5e-36 Identities = 179/236 (76%), Gaps = 7/236 (3%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATC-- 82639 |||| || | | ||||| || ||||||| |||||||||||| || ||||||||||| Sbjct 509 TACCACCACGGAGACGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGC 450 Query 82640 ----AGAT-AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGA 82694 || | || ||| ||| ||||| | |||||| ||||| || || | | ||||||| Sbjct 449 TGAGAGTTCNGAGTTCGACCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGA 390 Query 82695 TCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTA 82754 ||||| || || ||||| || || || || || ||||| ||||||||||| ||||| | Sbjct 389 TCTGGTGGAATACCTTCTTTGTCCTGTATTTTAGCTTTGACATTTTCAATTGTATCGGAA 330 Query 82755 GGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| ||||||||||| || || || || ||||| || || || || |||||||| Sbjct 329 GGTTCAACTTCCAAAGTGATTGTTTTTCCAGTCAAAGTTTTAACGAAAATCTGCAT 274 Score = 138 bits (152), Expect = 2e-27 Identities = 130/166 (78%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 82645 GAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTA 82704 || ||| ||| ||||| | |||||| ||||| || || | | |||||||||||| || | Sbjct 674 GAGTTCGACCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAA 615 Query 82705 TTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTT 82764 | ||||| ||||||||||| || ||||| ||||||||||| ||||| ||| || |||| Sbjct 614 TACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGCTCAACTT 555 Query 82765 CCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| || || || || ||||| || || || || || ||||| Sbjct 554 CCAAAGTGATAGTTTTTCCAGTCAAAGTTTTCACGAAAATTTGCAT 509 >seq4581 Length=275 Score = 125 bits (138), Expect = 1e-23 Identities = 122/157 (78%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||||| || || |||| ||| ||||||||||| || |||||||| Sbjct 119 TACCACCACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTCTGAATGTTATAATCGC 178 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||||||| ||||| | |||||| |||||||| ||||| | ||| |||||||||| Sbjct 179 TCAATGTTCTACCATCTTCCAATTGTTTGCCAGCAAAAATTAGACGTTGCTGATCTGGAG 238 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATT 82738 | || ||||| |||||||| || || ||||| ||||| Sbjct 239 GAATACCTTCTTTATCTTGGATTTTAGCTTTGACATT 275 Score = 93.3 bits (102), Expect = 8e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 ||||| || || || || || ||||| || |||||||||||||| |||||| |||||| Sbjct 16 CCTTCTTTGTCCTGTATTTTAGCTTTGACGTTTTCAATCGTATCGGAAGGTTCAACTTCC 75 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || ||||| || ||||| || || ||||| |||||||| Sbjct 76 AAGGTAATGGTCTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 119 >seq620 Length=8710 Score = 107 bits (118), Expect = 4e-18 Identities = 88/107 (82%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| ||||||||||| || ||||| ||||||||||| ||||| |||||| ||| Sbjct 8708 ATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCCACT 8649 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || || || || ||||| || || ||||| |||||||| Sbjct 8648 TCCAAAGTGATAGTTTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 8602 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 ||||| || ||||||||||| ||||| || |||||||| ||||| |||||| |||||| Sbjct 8389 CCTTCTTTGTCTTGAATCTTAGCTTTGACGTTTTCAATTGTATCGGAAGGTTCCACTTCC 8330 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || || || ||||| || || ||||| || ||||| Sbjct 8329 AAAGTGATAGTTTTTCCAGTCAAAGTTTTAACAAAAATTTGCAT 8286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981589947593540