Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq718 100 3e-16 seq135 84.2 2e-11 >seq718 Length=674 Score = 100 bits (110), Expect = 3e-16 Identities = 150/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||||| ||||| || ||||| ||||||| | || ||| | || || | Sbjct 251 AAATGCAAAGTGGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCA-TCTTCCAA 193 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || || || ||| |||| | || || || || ||||| || ||||| ||||| ||| Sbjct 192 TTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTGTCT-TGAA 134 Query 133574 CTTTTGCTT-GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| |||| || | |||| ||| |||| ||||| || || | || | |||||| | Sbjct 133 TTTTAGCTTTGACATTTTCAATCGTATCGGAAGGCTCAACTTCCAAAGTAATGGTTTTTC 74 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | |||| |||||| |||||||||||||| Sbjct 73 CAGTCAAAGTTTTCACGAAAATCTGCAT 46 >seq135 Length=1279 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || ||||| || ||||| ||||||| | || ||| | || || | || ||||| Sbjct 628 GTAGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCA-TCTTCCAATTGTTTGCC 570 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || |||| || || ||||| || ||||| || ||||| || || ||| ||| |||| Sbjct 569 AGCAAAAATCAGACGTTGCTGATCTGGAGGAATACCTTCTTTATCT-TGAATTTTAGCTT 511 Query 133583 -GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 || | |||| || |||| || ||||| || | || | ||| || || |||| || Sbjct 510 TGACATTTTCAATGGTATCGGAAGGTTCCACTTCCAAAGTAATGGTCTTTCCAGTCAAAG 451 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| || ||||||||||| Sbjct 450 TTTTGACAAAAATCTGCAT 432 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/209 (70%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGG-ACGAGTCCTCGAG 133513 || |||| ||||| ||||| || ||||||||||||| || || || | || || | Sbjct 865 AAGTGTAAAGTGGATTCTTTTTGAATATTGTAATCGCTCAATGTTCTACCA-TCTTCCAA 807 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || ||||| || |||| | || || || || || || || ||||| || || ||| Sbjct 806 TTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTATCT-TGAA 748 Query 133574 CTTTTGCTT-GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| |||| || | |||| || |||| || || || || | || | |||||| | Sbjct 747 TTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCAACTTCCAAAGTAATGGTTTTTC 688 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCATG 133661 | |||| ||||| ||||||||||||||| Sbjct 687 CAGTCAATGTTTTAACGAAAATCTGCATG 659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483306833546400