Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10]
18,860 sequences; 56,262,437 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq718 100 3e-16
seq135 84.2 2e-11
>seq718
Length=674
Score = 100 bits (110), Expect = 3e-16
Identities = 150/208 (72%), Gaps = 4/208 (2%)
Strand=Plus/Minus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513
||||| | ||||| ||||| || ||||| ||||||| | || ||| | || || |
Sbjct 251 AAATGCAAAGTGGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCA-TCTTCCAA 193
Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573
|| || || ||| |||| | || || || || ||||| || ||||| ||||| |||
Sbjct 192 TTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTGTCT-TGAA 134
Query 133574 CTTTTGCTT-GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632
||| |||| || | |||| ||| |||| ||||| || || | || | |||||| |
Sbjct 133 TTTTAGCTTTGACATTTTCAATCGTATCGGAAGGCTCAACTTCCAAAGTAATGGTTTTTC 74
Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660
| |||| |||||| ||||||||||||||
Sbjct 73 CAGTCAAAGTTTTCACGAAAATCTGCAT 46
>seq135
Length=1279
Score = 84.2 bits (92), Expect = 2e-11
Identities = 141/199 (71%), Gaps = 4/199 (2%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| || ||||| || ||||| ||||||| | || ||| | || || | || |||||
Sbjct 628 GTAGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCA-TCTTCCAATTGTTTGCC 570
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|| |||| || || ||||| || ||||| || ||||| || || ||| ||| ||||
Sbjct 569 AGCAAAAATCAGACGTTGCTGATCTGGAGGAATACCTTCTTTATCT-TGAATTTTAGCTT 511
Query 133583 -GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
|| | |||| || |||| || ||||| || | || | ||| || || |||| ||
Sbjct 510 TGACATTTTCAATGGTATCGGAAGGTTCCACTTCCAAAGTAATGGTCTTTCCAGTCAAAG 451
Query 133642 TTTTTACGAAAATCTGCAT 133660
|||| || |||||||||||
Sbjct 450 TTTTGACAAAAATCTGCAT 432
Score = 84.2 bits (92), Expect = 2e-11
Identities = 147/209 (70%), Gaps = 4/209 (2%)
Strand=Plus/Minus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGG-ACGAGTCCTCGAG 133513
|| |||| ||||| ||||| || ||||||||||||| || || || | || || |
Sbjct 865 AAGTGTAAAGTGGATTCTTTTTGAATATTGTAATCGCTCAATGTTCTACCA-TCTTCCAA 807
Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573
|| ||||| || |||| | || || || || || || || ||||| || || |||
Sbjct 806 TTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTATCT-TGAA 748
Query 133574 CTTTTGCTT-GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632
||| |||| || | |||| || |||| || || || || | || | |||||| |
Sbjct 747 TTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCAACTTCCAAAGTAATGGTTTTTC 688
Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCATG 133661
| |||| ||||| |||||||||||||||
Sbjct 687 CAGTCAATGTTTTAACGAAAATCTGCATG 659
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483306833546400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |