Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10]
18,860 sequences; 56,262,437 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq10223 215 1e-50
seq4298 149 1e-30
seq11681 96.9 8e-15
seq871 87.8 4e-12
seq5646 84.2 5e-11
>seq10223
Length=44262
Score = 215 bits (238), Expect = 1e-50
Identities = 420/610 (69%), Gaps = 23/610 (4%)
Strand=Plus/Minus
Query 110543 CGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAA 110602
||||||| ||||||||||||||| ||| | | ||| || |||| |||| || ||
Sbjct 21528 CGATGATAGTATTGAAGGTATTTACGATACGTTGAAACAATGTGCTATTATATCGAAGTC 21469
Query 110603 CTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGC--AAATA--TCG 110658
| || || || ||| || | |||||| |||||| |||| ||| | | ||| | |
Sbjct 21468 AGCCGGTGGCATCGGTCTTAATGTTCATTGTATTCGAGCAAATGGATCGTACATAGTTGG 21409
Query 110659 CAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTG 110718
|| || | ||| ||||| ||| | ||||| ||||| |||| | |||||| || |
Sbjct 21408 CACCA----AAGGTCATTCAAATGGTTTGGTTCCGATGTTGCGAGTTTACAACGATACCG 21353
Query 110719 CAAAATATGTGAATCAAGGTGGTAAGA---GAAATGGCTCATTTGCTATCTATCTCGAAC 110775
| ||||| ||||||||||||| | | ||| | || || || ||| | ||||
Sbjct 21352 CTCGTTATGTCGATCAAGGTGGTAATAAGCGTCCTGGTGCTTTCGCAATATATTTGGAAC 21293
Query 110776 CTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAA--AAATCAAGGATTTGAAGA 110833
| |||||| ||||||| || || || ||| | || | || |||| || | |||||
Sbjct 21292 CGTGGCATGCAGATATTTTCGACTTTTTAAA--TTTGAAACGAAATACTGGCTCAGAAGA 21235
Query 110834 ACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGT 110893
| | | || | ||| | || |||||| | ||||| | ||||| |||||||||||| |
Sbjct 21234 ATTACGTGCCAGAGATCTTTTCTATGCATTATGGATACCGGATTTGTTCATGAAACGT-T 21176
Query 110894 TCAAGAAA---ATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGA 110950
| |||| |||| | ||||| | ||||| || | | |||||| | ||
Sbjct 21175 GC--GAAACCGATGGGGTTTGGTCGTTGATGTGCCCCAAAGAATGTCCTGGATTGCAAGA 21118
Query 110951 TGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGA-AGGCAAGTTTC 111009
||| | || |||| || |||| || || || |||||||| ||||| | | | | ||
Sbjct 21117 TGTTTGGGGCGAAGAATTCGAAGCTCTCTATGAGAAATATGAGAAAGAGAATCGA-TATC 21059
Query 111010 GCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTG 111069
|||||||||||||||||| |||||||||||| ||| | || | || || ||||| |
Sbjct 21058 GCAAACAAATTCCAGCTCGTGAACTTTGGTTCGCAATAGTCGATGCTCAGGTGGAAACCG 20999
Query 111070 GAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAG 111129
|||| || | || | || ||||||||| |||| | ||||||||||||| ||| | |
Sbjct 20998 GAACACCATTCATGGTCTACAAAGATCATTGTAATAGAAAATCTAATCAAAAAAATCTTG 20939
Query 111130 GAACAATTAA 111139
| || || ||
Sbjct 20938 GCACCATCAA 20929
>seq4298
Length=5336
Score = 149 bits (164), Expect = 1e-30
Identities = 556/863 (64%), Gaps = 24/863 (3%)
Strand=Plus/Plus
Query 131435 TTTCCAATTAAACATCACGATGTTTTCGATATGTATAAGAAATCTGTTGCGGCCTTCTGG 131494
||||||||| || | | ||| | | || ||||| |||||| | | || | || |||
Sbjct 1421 TTTCCAATTCAATACAAAGATATCTGGGAGATGTACAAGAAAGCGGAGGCATCGTTTTGG 1480
Query 131495 ACTGTTGAAGAGATCGATATGACCAAAGATATTGATGATTGGGAAAAATTAACCTTGAAT 131554
|| || ||||| ||||| | | ||| | ||| ||||| | || | ||||
Sbjct 1481 ACAGTCGAAGAAGTCGATTTAAGTCGCGATCTAGATCATTGGAACTCGTTGAATAAGAAT 1540
Query 131555 GAAAAAGATTTTGTTTCCAAAGTTCTTGCATTCTTCGCCGGAAGTGATGGCATTGTTATT 131614
|||||| |||| | || | || | |||||||| || | ||||||||| || |||| |
Sbjct 1541 GAAAAACATTTCATCTCTCATGTGTTAGCATTCTTTGCTGCAAGTGATGGAATAGTTAAT 1600
Query 131615 GAAAATCTTGTTATTAATTTCATTCAAGAAATTGATATTCCTGAAGTAACATCGTTCTAC 131674
|| ||||| | | |||||||| || || | || || || | || || ||
Sbjct 1601 GAGAATCTAGCTGAGCGTTTCATTCGTGATGTTCAGATACCAGAGGCTCGATGTTTTTAT 1660
Query 131675 ACATTTCAAGCCGCTGTTGAATCTATTCATAGCGAGATGTATTCATTATTGATTGAGAGT 131734
|||||| ||| | ||| |||||| || |||||||| || | || | |
Sbjct 1661 GGATTTCAGATCGCCATCGAAAATATTCACTCTGAAATGTATTCGTTGCTCATCAATACC 1720
Query 131735 CTTGTTAAAAATGAAGATGATAAAAATAAATTATTTGATGCTGTAAATAAATTTCCTGCA 131794
| | ||| || || |||| | | || | || |||| | | | ||| |||
Sbjct 1721 TATATAAAAGATAAATATGAGAGAGATTTTCTTTTCAATGCCATTCAAACATTGCCTTGT 1780
Query 131795 ATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCT 131854
| | |||||||| |||||||||| | ||||| |||||||||| | || ||| ||
Sbjct 1781 GTCGAGAAGAAAGCGAAATGGGCTATCAGATGGACTCAAGATGATAGAGTTAGCTTTGCT 1840
Query 131855 ACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCT 131914
| | ||||| || || ||| || ||||| || || || || || | || |||
Sbjct 1841 GAACGTCTTGTTGCGTTCGCTGCCGTCGAAGGAATCTTTTTCTCTGGCTCGTTTGCGGCT 1900
Query 131915 ATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTG----GACTCTCATTGTCCAATCAATT 131970
|||||||||||||| || || ||| ||||||||| |||| ||| | ||| ||||
Sbjct 1901 ATCTTTTGGCTTAAAAAACGAGGACTGATGCCTGGCTTGACTTTCAGT----AATGAATT 1956
Query 131971 CATCTCGAGAGATGAAGCATTGCATACTGAATTTGCTATATTAATCTATAGAAAATTTGC 132030
|||||| | ||||||| | | ||| ||| |||||| || | | || | | |
Sbjct 1957 GATCTCGCGTGATGAAGGACTTCATTGTGATTTTGCTTGTTTGCTTTTCCGACACATCGT 2016
Query 132031 TGATAAACTT-----GATGAAAATAATATTAAACAACTTATAAGCGAAGCAGTTGATATC 132085
|| || | | |||| || || || | || | | | |||| || || ||
Sbjct 2017 CAATCGACCTTCTCGGGTGAA---GATCTTGAAGA--TTGTCACCAAAGCGGTCGAGATT 2071
Query 132086 GAGAAGGAGTTTATTACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAAT-GCTGACTC 132144
||| | || ||| | || || || |||||| | ||||| || || ||| || |||
Sbjct 2072 GAGCAAGAATTTTTGACCGACGCCTTGCCTGTCTCCTTGATCGGAATCAATAGC--ACTT 2129
Query 132145 T-ATGAAGGAGTACATTGAATTCGTTGCTGATCGTTTAATTAACCAACTTGGATATT-CC 132202
| |||| |||||||| |||| | ||||||||||| || | | ||||| || |
Sbjct 2130 TGATGAGTGAGTACATCGAATACTGCGCTGATCGTTT-GTTGGTCGAGCTGGATGTTGGC 2188
Query 132203 AAGATTTATAACACCCAAAACCCCTATACATGGATGGAGTCAATTTCGCTTGAAGGTAAA 132262
|| |||| || || |||| || | | | ||||| || || | || ||||||
Sbjct 2189 AAATTTTACAATACAAAAAATCCATTCTCTTTCATGGAACAGATCTCTTTGGAGGGTAAA 2248
Query 132263 ACGAACTTCTTCGAAAGTCGTGT 132285
|| || || ||||||| |||||
Sbjct 2249 ACTAATTTTTTCGAAAAACGTGT 2271
>seq11681
Length=2018
Score = 96.9 bits (106), Expect = 8e-15
Identities = 133/186 (72%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 304886 TTACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGCAGGCATCT 304945
||||||| |||| | || ||||| | || || ||||| |||| || | ||
Sbjct 818 TTACAATTTCATGTCGCTACATTTGTTGACAACGAAATACCTGGCATACCGAGAGCTCAA 759
Query 304946 CAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTCGT 305005
|||| |||||| | || ||||| ||||| |||||| | |||| |||||| |||||
Sbjct 758 CAAAAATCTGGACGGCCATTAAAATCTATTAAGCAACGTCTGAAAGCTAAAGAAGGTCGA 699
Query 305006 ATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACCT 305065
|| |||| ||| | ||||||||||| || |||||| || |||| || ||||| |||
Sbjct 698 ATAAGAGGAAATTTGATGGGAAAACGGGTAGATTTTTCAGCCAGAACAGTCATCACTCCT 639
Query 305066 GATTCT 305071
||| ||
Sbjct 638 GATCCT 633
>seq871
Length=12966
Score = 87.8 bits (96), Expect = 4e-12
Identities = 125/176 (71%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 279065 GGTATTCCAAAACTTGATGATGCAAACTGGGCTGGAGGTCGTAAATCTCAAGAATGTGCT 279124
||||| ||||| || || || |||||| ||||| | | || ||| ||| ||| |
Sbjct 3973 GGTATACCAAAGCTCGAAGACGCAAACGATGCTGGCACTAGAAATTCTTTAGATTGTACA 4032
Query 279125 TTATTTCTTACTGAGGGAGATTCTGCTGCTACATTTGCGATTGCTGGTTTATCTGTTATT 279184
||| || | || || |||||||| || |||| | || |||||||| | | ||
Sbjct 4033 TTAATTTTGACCGAAGGAGATTCGGCAAAATCATTGGTCATCGCTGGTTTCGGTATCGTT 4092
Query 279185 GGTCGTGATAAATATGGCGTATTTCCTTTAAGAGGTAAAGTAATTAATGCTCGTGA 279240
||||| ||||||||||| || || ||||||||||| ||| | | |||| ||| ||
Sbjct 4093 GGTCGCGATAAATATGGTGTTTTCCCTTTAAGAGGCAAAATGTTGAATGTTCGAGA 4148
>seq5646
Length=4794
Score = 84.2 bits (92), Expect = 5e-11
Identities = 85/108 (79%), Gaps = 2/108 (2%)
Strand=Plus/Plus
Query 167247 CCACCAGCATTATCGAATTCATTCGC-ATAATTTGGTGCTGAAAATACAGTAACTAATTT 167305
|| ||||||||||||||||| | ||| |||||| || ||||| || | ||||| ||||
Sbjct 2018 CCGCCAGCATTATCGAATTC-TCCGCAATAATTCGGGGCTGAGAACAATGTAACCAATTG 2076
Query 167306 ACGATTGAAAAATAATTCATAACCATCTTCAACAACTTCATGGGCACG 167353
||| || || ||||| || |||||||| ||||||| ||| |||||
Sbjct 2077 ACGTTTAGCGAAAAATTCGTAGCCATCTTCGACAACTTGATGCGCACG 2124
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186526014104460
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |