Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq10223 215 1e-50 seq4298 149 1e-30 seq11681 96.9 8e-15 seq871 87.8 4e-12 seq5646 84.2 5e-11 >seq10223 Length=44262 Score = 215 bits (238), Expect = 1e-50 Identities = 420/610 (69%), Gaps = 23/610 (4%) Strand=Plus/Minus Query 110543 CGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAA 110602 ||||||| ||||||||||||||| ||| | | ||| || |||| |||| || || Sbjct 21528 CGATGATAGTATTGAAGGTATTTACGATACGTTGAAACAATGTGCTATTATATCGAAGTC 21469 Query 110603 CTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGC--AAATA--TCG 110658 | || || || ||| || | |||||| |||||| |||| ||| | | ||| | | Sbjct 21468 AGCCGGTGGCATCGGTCTTAATGTTCATTGTATTCGAGCAAATGGATCGTACATAGTTGG 21409 Query 110659 CAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTG 110718 || || | ||| ||||| ||| | ||||| ||||| |||| | |||||| || | Sbjct 21408 CACCA----AAGGTCATTCAAATGGTTTGGTTCCGATGTTGCGAGTTTACAACGATACCG 21353 Query 110719 CAAAATATGTGAATCAAGGTGGTAAGA---GAAATGGCTCATTTGCTATCTATCTCGAAC 110775 | ||||| ||||||||||||| | | ||| | || || || ||| | |||| Sbjct 21352 CTCGTTATGTCGATCAAGGTGGTAATAAGCGTCCTGGTGCTTTCGCAATATATTTGGAAC 21293 Query 110776 CTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAA--AAATCAAGGATTTGAAGA 110833 | |||||| ||||||| || || || ||| | || | || |||| || | ||||| Sbjct 21292 CGTGGCATGCAGATATTTTCGACTTTTTAAA--TTTGAAACGAAATACTGGCTCAGAAGA 21235 Query 110834 ACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGT 110893 | | | || | ||| | || |||||| | ||||| | ||||| |||||||||||| | Sbjct 21234 ATTACGTGCCAGAGATCTTTTCTATGCATTATGGATACCGGATTTGTTCATGAAACGT-T 21176 Query 110894 TCAAGAAA---ATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGA 110950 | |||| |||| | ||||| | ||||| || | | |||||| | || Sbjct 21175 GC--GAAACCGATGGGGTTTGGTCGTTGATGTGCCCCAAAGAATGTCCTGGATTGCAAGA 21118 Query 110951 TGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGA-AGGCAAGTTTC 111009 ||| | || |||| || |||| || || || |||||||| ||||| | | | | || Sbjct 21117 TGTTTGGGGCGAAGAATTCGAAGCTCTCTATGAGAAATATGAGAAAGAGAATCGA-TATC 21059 Query 111010 GCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTG 111069 |||||||||||||||||| |||||||||||| ||| | || | || || ||||| | Sbjct 21058 GCAAACAAATTCCAGCTCGTGAACTTTGGTTCGCAATAGTCGATGCTCAGGTGGAAACCG 20999 Query 111070 GAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAG 111129 |||| || | || | || ||||||||| |||| | ||||||||||||| ||| | | Sbjct 20998 GAACACCATTCATGGTCTACAAAGATCATTGTAATAGAAAATCTAATCAAAAAAATCTTG 20939 Query 111130 GAACAATTAA 111139 | || || || Sbjct 20938 GCACCATCAA 20929 >seq4298 Length=5336 Score = 149 bits (164), Expect = 1e-30 Identities = 556/863 (64%), Gaps = 24/863 (3%) Strand=Plus/Plus Query 131435 TTTCCAATTAAACATCACGATGTTTTCGATATGTATAAGAAATCTGTTGCGGCCTTCTGG 131494 ||||||||| || | | ||| | | || ||||| |||||| | | || | || ||| Sbjct 1421 TTTCCAATTCAATACAAAGATATCTGGGAGATGTACAAGAAAGCGGAGGCATCGTTTTGG 1480 Query 131495 ACTGTTGAAGAGATCGATATGACCAAAGATATTGATGATTGGGAAAAATTAACCTTGAAT 131554 || || ||||| ||||| | | ||| | ||| ||||| | || | |||| Sbjct 1481 ACAGTCGAAGAAGTCGATTTAAGTCGCGATCTAGATCATTGGAACTCGTTGAATAAGAAT 1540 Query 131555 GAAAAAGATTTTGTTTCCAAAGTTCTTGCATTCTTCGCCGGAAGTGATGGCATTGTTATT 131614 |||||| |||| | || | || | |||||||| || | ||||||||| || |||| | Sbjct 1541 GAAAAACATTTCATCTCTCATGTGTTAGCATTCTTTGCTGCAAGTGATGGAATAGTTAAT 1600 Query 131615 GAAAATCTTGTTATTAATTTCATTCAAGAAATTGATATTCCTGAAGTAACATCGTTCTAC 131674 || ||||| | | |||||||| || || | || || || | || || || Sbjct 1601 GAGAATCTAGCTGAGCGTTTCATTCGTGATGTTCAGATACCAGAGGCTCGATGTTTTTAT 1660 Query 131675 ACATTTCAAGCCGCTGTTGAATCTATTCATAGCGAGATGTATTCATTATTGATTGAGAGT 131734 |||||| ||| | ||| |||||| || |||||||| || | || | | Sbjct 1661 GGATTTCAGATCGCCATCGAAAATATTCACTCTGAAATGTATTCGTTGCTCATCAATACC 1720 Query 131735 CTTGTTAAAAATGAAGATGATAAAAATAAATTATTTGATGCTGTAAATAAATTTCCTGCA 131794 | | ||| || || |||| | | || | || |||| | | | ||| ||| Sbjct 1721 TATATAAAAGATAAATATGAGAGAGATTTTCTTTTCAATGCCATTCAAACATTGCCTTGT 1780 Query 131795 ATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCT 131854 | | |||||||| |||||||||| | ||||| |||||||||| | || ||| || Sbjct 1781 GTCGAGAAGAAAGCGAAATGGGCTATCAGATGGACTCAAGATGATAGAGTTAGCTTTGCT 1840 Query 131855 ACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCT 131914 | | ||||| || || ||| || ||||| || || || || || | || ||| Sbjct 1841 GAACGTCTTGTTGCGTTCGCTGCCGTCGAAGGAATCTTTTTCTCTGGCTCGTTTGCGGCT 1900 Query 131915 ATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTG----GACTCTCATTGTCCAATCAATT 131970 |||||||||||||| || || ||| ||||||||| |||| ||| | ||| |||| Sbjct 1901 ATCTTTTGGCTTAAAAAACGAGGACTGATGCCTGGCTTGACTTTCAGT----AATGAATT 1956 Query 131971 CATCTCGAGAGATGAAGCATTGCATACTGAATTTGCTATATTAATCTATAGAAAATTTGC 132030 |||||| | ||||||| | | ||| ||| |||||| || | | || | | | Sbjct 1957 GATCTCGCGTGATGAAGGACTTCATTGTGATTTTGCTTGTTTGCTTTTCCGACACATCGT 2016 Query 132031 TGATAAACTT-----GATGAAAATAATATTAAACAACTTATAAGCGAAGCAGTTGATATC 132085 || || | | |||| || || || | || | | | |||| || || || Sbjct 2017 CAATCGACCTTCTCGGGTGAA---GATCTTGAAGA--TTGTCACCAAAGCGGTCGAGATT 2071 Query 132086 GAGAAGGAGTTTATTACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAAT-GCTGACTC 132144 ||| | || ||| | || || || |||||| | ||||| || || ||| || ||| Sbjct 2072 GAGCAAGAATTTTTGACCGACGCCTTGCCTGTCTCCTTGATCGGAATCAATAGC--ACTT 2129 Query 132145 T-ATGAAGGAGTACATTGAATTCGTTGCTGATCGTTTAATTAACCAACTTGGATATT-CC 132202 | |||| |||||||| |||| | ||||||||||| || | | ||||| || | Sbjct 2130 TGATGAGTGAGTACATCGAATACTGCGCTGATCGTTT-GTTGGTCGAGCTGGATGTTGGC 2188 Query 132203 AAGATTTATAACACCCAAAACCCCTATACATGGATGGAGTCAATTTCGCTTGAAGGTAAA 132262 || |||| || || |||| || | | | ||||| || || | || |||||| Sbjct 2189 AAATTTTACAATACAAAAAATCCATTCTCTTTCATGGAACAGATCTCTTTGGAGGGTAAA 2248 Query 132263 ACGAACTTCTTCGAAAGTCGTGT 132285 || || || ||||||| ||||| Sbjct 2249 ACTAATTTTTTCGAAAAACGTGT 2271 >seq11681 Length=2018 Score = 96.9 bits (106), Expect = 8e-15 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 304886 TTACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGCAGGCATCT 304945 ||||||| |||| | || ||||| | || || ||||| |||| || | || Sbjct 818 TTACAATTTCATGTCGCTACATTTGTTGACAACGAAATACCTGGCATACCGAGAGCTCAA 759 Query 304946 CAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTCGT 305005 |||| |||||| | || ||||| ||||| |||||| | |||| |||||| ||||| Sbjct 758 CAAAAATCTGGACGGCCATTAAAATCTATTAAGCAACGTCTGAAAGCTAAAGAAGGTCGA 699 Query 305006 ATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACCT 305065 || |||| ||| | ||||||||||| || |||||| || |||| || ||||| ||| Sbjct 698 ATAAGAGGAAATTTGATGGGAAAACGGGTAGATTTTTCAGCCAGAACAGTCATCACTCCT 639 Query 305066 GATTCT 305071 ||| || Sbjct 638 GATCCT 633 >seq871 Length=12966 Score = 87.8 bits (96), Expect = 4e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 279065 GGTATTCCAAAACTTGATGATGCAAACTGGGCTGGAGGTCGTAAATCTCAAGAATGTGCT 279124 ||||| ||||| || || || |||||| ||||| | | || ||| ||| ||| | Sbjct 3973 GGTATACCAAAGCTCGAAGACGCAAACGATGCTGGCACTAGAAATTCTTTAGATTGTACA 4032 Query 279125 TTATTTCTTACTGAGGGAGATTCTGCTGCTACATTTGCGATTGCTGGTTTATCTGTTATT 279184 ||| || | || || |||||||| || |||| | || |||||||| | | || Sbjct 4033 TTAATTTTGACCGAAGGAGATTCGGCAAAATCATTGGTCATCGCTGGTTTCGGTATCGTT 4092 Query 279185 GGTCGTGATAAATATGGCGTATTTCCTTTAAGAGGTAAAGTAATTAATGCTCGTGA 279240 ||||| ||||||||||| || || ||||||||||| ||| | | |||| ||| || Sbjct 4093 GGTCGCGATAAATATGGTGTTTTCCCTTTAAGAGGCAAAATGTTGAATGTTCGAGA 4148 >seq5646 Length=4794 Score = 84.2 bits (92), Expect = 5e-11 Identities = 85/108 (79%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 167247 CCACCAGCATTATCGAATTCATTCGC-ATAATTTGGTGCTGAAAATACAGTAACTAATTT 167305 || ||||||||||||||||| | ||| |||||| || ||||| || | ||||| |||| Sbjct 2018 CCGCCAGCATTATCGAATTC-TCCGCAATAATTCGGGGCTGAGAACAATGTAACCAATTG 2076 Query 167306 ACGATTGAAAAATAATTCATAACCATCTTCAACAACTTCATGGGCACG 167353 ||| || || ||||| || |||||||| ||||||| ||| ||||| Sbjct 2077 ACGTTTAGCGAAAAATTCGTAGCCATCTTCGACAACTTGATGCGCACG 2124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186526014104460