Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq135 132 3e-26 seq718 120 2e-22 seq4581 86.0 4e-12 >seq135 Length=1279 Score = 132 bits (146), Expect = 3e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| |||||||| |||| |||| |||||||| || || |||||| Sbjct 431 ACCACCCCGGAGACGCAACACCAAGTGTAAAGTGGATTCTTTTTGGATATTATAATCGCT 372 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || || | || ||||||||||| || |||||||||||||| || |||||| | || Sbjct 371 GAGAGTTCGACCATCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGG 312 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| ||||| | || |||| || | || ||| | ||| | Sbjct 311 AATACCTTCTTTGTCCTGTATTTT-AGCTTTGACATTTTCAATAGTATCGGAAGGTTCAA 253 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| ||||| || || || ||||| || || ||||||||| Sbjct 252 CTTCCAAAGTGATTGTTTTTCCAGTCAATGTTTTCACGAAAATCTGCATA 203 Score = 127 bits (140), Expect = 1e-24 Identities = 175/241 (73%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| | | ||| |||||||| || | ||| |||||||| || Sbjct 670 AAAATCTGCATGCCACCACGGAGACGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATA 611 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 || |||||| ||| || || | || ||||||||||| || |||||||||| ||| ||| Sbjct 610 TTATAATCGCTGAGAGTTCGACCATCTTCCAATTGTTTGCCAGCAAAAATCAGACGTTGC 551 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 |||||| | || | ||||||||| || |||||| | || |||| || | ||| || Sbjct 550 TGATCTGGAGGAATACCTTCTTTATCTTGAATTTT-AGCTTTGACATTTTCAATGGTATC 492 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | | |||||| || | || || || || || || || ||||| ||||| |||||||| Sbjct 491 GGAAGGTTCCACTTCCAAAGTAATGGTCTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 432 Query 33750 A 33750 | Sbjct 431 A 431 Score = 122 bits (134), Expect = 6e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| || ||||| |||| |||| |||||||| || ||||||||| Sbjct 887 ACCACCACGGAGACGCAATACCAAGTGTAAAGTGGATTCTTTTTGAATATTGTAATCGCT 828 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||| | | || ||||||||||| || |||||||||||||| || |||||| | || Sbjct 827 CAATGTTCTACCATCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGG 768 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||| || |||||| | || |||| || | ||| ||| | ||| | Sbjct 767 AATACCTTCTTTATCTTGAATTTT-AGCTTTGACATTTTCAATGGTATCGGAAGGTTCAA 709 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | || || ||||| || || || ||||| || || |||||||| Sbjct 708 CTTCCAAAGTAATGGTTTTTCCAGTCAATGTTTTAACGAAAATCTGCAT 660 Score = 100 bits (110), Expect = 2e-16 Identities = 145/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | || ||||||||||| | |||| ||||| || || ||||||||| Sbjct 203 ACCACCACGGAGTCGCAACACCAAATGCAAAGTGGATTCTTTCTGGATATTGTAATCGCT 144 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||| | | || ||||||||||| || || ||||||||||| || |||||| | || Sbjct 143 CAATGTTCTACCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGG 84 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| |||||| | || |||| || | || ||| | ||||| Sbjct 83 AATACCTTCTTTGTCTTGAATTTT-AGCTTTGACATTTTCAATCGTATCGGAAGGTTCCA 25 Query 33701 CGTCAACCGTGATCGTTTTACC 33722 | || | ||||| ||||| || Sbjct 24 CTTCCAAAGTGATAGTTTTTCC 3 Score = 95.1 bits (104), Expect = 8e-15 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | || ||||||||||| | |||| ||||| || || ||||||||| Sbjct 1166 ACCACCACGGAGTCGCAACACCAAATGCAAAGTGGATTCTTTCTGGATATTGTAATCGCT 1107 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||| | | || ||||||||||| || |||||||||||||| ||||||||| |||| Sbjct 1106 CAATGTTCTGCCATCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGCTGATCTGGCGG 1047 Query 33642 CACACCT 33648 | |||| Sbjct 1046 AATACCT 1040 >seq718 Length=674 Score = 120 bits (132), Expect = 2e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | || ||||||||||| | |||| |||||||| || || |||||| Sbjct 273 ACCACCACGGAGTCGCAACACCAAATGCAAAGTGGATTCTTTTTGGATATTATAATCGCT 214 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || || | || ||||||||||| || || ||||||||||| || |||||| | || Sbjct 213 GAGAGTTCGACCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGG 154 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| |||||| | || |||| || | || ||| | || | Sbjct 153 AATACCTTCTTTGTCTTGAATTTT-AGCTTTGACATTTTCAATCGTATCGGAAGGCTCAA 95 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || ||||| || || || ||||| || || ||||||||| Sbjct 94 CTTCCAAAGTAATGGTTTTTCCAGTCAAAGTTTTCACGAAAATCTGCATA 45 Score = 113 bits (124), Expect = 3e-20 Identities = 170/237 (72%), Gaps = 9/237 (4%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCG-- 33579 |||||| | | ||| |||||||| || | ||| |||||||| || || |||||| Sbjct 508 ACCACCACGGAGACGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCT 449 Query 33580 GAGAGTG-TGCGTTCG----TCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGAT 33634 |||||| | ||||| || ||||||||||| || || ||||||||||| || |||| Sbjct 448 GAGAGTTCNGAGTTCGACCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGAT 389 Query 33635 CTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTT 33693 || | || | |||||||||||| ||||| | || |||| || | || ||| Sbjct 388 CTGGTGGAATACCTTCTTTGTCCTGTATTTT-AGCTTTGACATTTTCAATTGTATCGGAA 330 Query 33694 GATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | ||| || || | ||||| ||||| || || || ||||| || || ||||||||| Sbjct 329 GGTTCAACTTCCAAAGTGATTGTTTTTCCAGTCAAAGTTTTAACGAAAATCTGCATA 273 >seq4581 Length=275 Score = 86.0 bits (94), Expect = 4e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| || |||||||| | ||| ||||| || ||||| |||||| Sbjct 120 ACCACCACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTCTGAATGTTATAATCGCT 179 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||| | | || ||||||||||| || |||||||| | ||| ||||||||| | || Sbjct 180 CAATGTTCTACCATCTTCCAATTGTTTGCCAGCAAAAATTAGACGTTGCTGATCTGGAGG 239 Query 33642 CACACCTTCTTTGTC 33656 | ||||||||| || Sbjct 240 AATACCTTCTTTATC 254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328628445331200