Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq135 120 7e-22 seq718 91.5 3e-13 >seq135 Length=1279 Score = 120 bits (132), Expect = 7e-22 Identities = 145/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 206197 GGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAAGCAAAA 206255 |||||||| |||||||||||||||||| ||| || || | ||| || ||||| ||| Sbjct 3 GGAAAAACTATCACTTTGGAAGTGGAACCTTCCGATACGATTGAAAATGTCAAAGCTAAA 62 Query 206256 GATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCA 206315 |||||||| |||||||| ||| || || ||| | | || ||||| || || || Sbjct 63 -ATTCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTTTGATTTTCGCTGGTAAACA 121 Query 206316 GTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCT 206375 ||||||||||| || || ||| ||||||||| |||||||||| || ||| | || | Sbjct 122 ATTGGAAGATGGTAGAACATTGAGCGATTACAATATCCAGAAAGAATCCACTTTGCATTT 181 Query 206376 TGTTTTGAGACTTCG 206390 || ||| |||| || Sbjct 182 GGTGTTGCGACTCCG 196 Score = 109 bits (120), Expect = 1e-18 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| | || ||||| || || ||||||||||||||| ||| || Sbjct 435 CAGATTTTTGTCAAAACTTTGACTGGAAAGACCATTACTTTGGAAGTGGAACCTTCCGAT 494 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | ||| || ||||| ||| |||||||| |||||||| ||| || || || Sbjct 495 ACCATTGAAAATGTCAAAGCTAAA-ATTCAAGATAAAGAAGGTATTCCTCCAGATCAGCA 553 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | || || || || || || || ||||||||||| | ||| | |||||| || | Sbjct 554 ACGTCTGATTTTTGCTGGCAAACAATTGGAAGATGGTCGAACTCTCAGCGATTATAATAT 613 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||| ||||| |||||| | ||| | || ||| | || || Sbjct 614 CCAAAAAGAATCTACTTTGCACTTGGTGTTGCGTCTCCG 652 Score = 100 bits (110), Expect = 7e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || |||||||| || ||||||||||| ||| ||| || || | ||| Sbjct 675 AAAACATTGACTGGAAAAACCATTACTTTGGAAGTTGAACCTTCCGATACCATTGAAAAT 734 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| |||||||| |||||||| ||| || || ||| | | || || Sbjct 735 GTCAAAGCTAAA-ATTCAAGATAAAGAAGGTATTCCACCAGATCAACAACGTTTGATTTT 793 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || || || ||||||||||| || || ||| ||||||||| | || ||||| || Sbjct 794 TGCTGGCAAACAATTGGAAGATGGTAGAACATTGAGCGATTACAATATTCAAAAAGAATC 853 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 ||| | ||| | || ||| | || || Sbjct 854 CACTTTACACTTGGTATTGCGTCTCCG 880 Score = 87.8 bits (96), Expect = 4e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || |||||||| |||||||||||||| ||| ||| || || | ||| Sbjct 219 AAAACATTGACTGGAAAAACAATCACTTTGGAAGTTGAACCTTCCGATACTATTGAAAAT 278 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| || || || |||||||| ||| || || ||| | | || || Sbjct 279 GTCAAAGCTAAA-ATACAGGACAAAGAAGGTATTCCACCAGATCAACAACGTTTGATTTT 337 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || || || ||||||||||| | ||| | |||||| || |||| ||||| || Sbjct 338 TGCTGGTAAACAATTGGAAGATGGTCGAACTCTCAGCGATTATAATATCCAAAAAGAATC 397 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 ||| | ||| | || ||| | || || Sbjct 398 CACTTTACACTTGGTGTTGCGTCTCCG 424 >seq718 Length=674 Score = 91.5 bits (100), Expect = 3e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || |||||||| || ||||||||||| || ||| || || | ||| Sbjct 61 AAAACTTTGACTGGAAAAACCATTACTTTGGAAGTTGAGCCTTCCGATACGATTGAAAAT 120 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| |||||||| |||||||| ||| || || ||| | | || || Sbjct 121 GTCAAAGCTAAA-ATTCAAGACAAAGAAGGTATTCCTCCAGATCAACAACGTTTGATTTT 179 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || || || ||||||||||| | ||| | |||||| || |||| ||||| || Sbjct 180 CGCTGGTAAACAATTGGAAGATGGTCGAACTCTCAGCGATTATAATATCCAAAAAGAATC 239 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 ||| | || | || ||| |||| || Sbjct 240 CACTTTGCATTTGGTGTTGCGACTCCG 266 Score = 87.8 bits (96), Expect = 4e-12 Identities = 150/214 (70%), Gaps = 9/214 (4%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || |||||||| |||||||||||||| ||| ||| || ||| | ||| Sbjct 289 AAAACTTTGACTGGAAAAACAATCACTTTGGAAGTTGAACCTTCCGATACAATTGAAAAT 348 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| || || || |||||||| ||| || || ||| | | || || Sbjct 349 GTCAAAGCTAAA-ATACAGGACAAAGAAGGTATTCCACCAGATCAACAACGTTTGATTTT 407 Query 206304 CGCCGGAAAGCAGTTGGAAGATG---GAA----GGACTTTGGCCGATTACAACGTCCAGA 206356 ||| || || || |||||||||| ||| | ||| | |||||| || |||| | Sbjct 408 CGCTGGCAAACAATTGGAAGATGGTCGAACTCNGAACTCTCAGCGATTATAATATCCAAA 467 Query 206357 AAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 |||| |||||| | ||| | || ||| | || || Sbjct 468 AAGAATCTACTTTGCACTTGGTGTTGCGTCTCCG 501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181535220390060