Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10]
18,860 sequences; 56,262,437 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq135 129 6e-25
seq718 127 2e-24
seq4581 95.1 1e-14
>seq135
Length=1279
Score = 129 bits (142), Expect = 6e-25
Identities = 158/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968
||||| ||||| |||| | || ||||||||||| ||||| ||||||| || | |
Sbjct 874 CGCAATACCAAGTGTAAAGTGGATTCTTTTTGAATATTGTAATCGCTCAATGTTCTACCA 815
Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028
||||| | ||||| || | | | || | ||| ||||||||||| || || |||||||||
Sbjct 814 TCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTA 755
Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088
|| |||||| ||| | | ||| | ||||||| || || ||||| | || |
Sbjct 754 TCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCAACTTCCAAAGTAATG 695
Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124
||||| ||||||| ||||| | |||||||||||||
Sbjct 694 GTTTTTCCAGTCAATGTTTTAACGAAAATCTGCATG 659
Score = 118 bits (130), Expect = 1e-21
Identities = 155/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968
||||| ||||| |||| | || |||||||| || || || ||||| | || || |
Sbjct 418 CGCAACACCAAGTGTAAAGTGGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCA 359
Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028
||||| | |||||||| | | | || | ||| ||||||||||| || || ||||||||
Sbjct 358 TCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTG 299
Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088
|| ||||| ||| | | ||| | |||||||| || || ||||| | || |
Sbjct 298 TCCTGTATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGTGATT 239
Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
||||| ||||||| ||||| | ||||||||||||
Sbjct 238 GTTTTTCCAGTCAATGTTTTCACGAAAATCTGCAT 204
Score = 118 bits (130), Expect = 1e-21
Identities = 155/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968
||||| ||||| || | | || |||||||| || || || ||||| | || || |
Sbjct 646 CGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCA 587
Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028
||||| | ||||| || | | | || ||||| || ||||||||||| || |||||||||
Sbjct 586 TCTTCCAATTGTTTGCCAGCAAAAATCAGACGTTGCTGATCTGGAGGAATACCTTCTTTA 527
Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088
|| |||||| ||| | | ||| | ||||||| || |||||||| | || |
Sbjct 526 TCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCCACTTCCAAAGTAATG 467
Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| || ||||||| |||||| | |||||||||||
Sbjct 466 GTCTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 432
Score = 91.5 bits (100), Expect = 1e-13
Identities = 134/190 (71%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968
||||| |||||||| | | || ||||| || || ||||| ||||||| || | |
Sbjct 190 CGCAACACCAAATGCAAAGTGGATTCTTTCTGGATATTGTAATCGCTCAATGTTCTACCA 131
Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028
||||| | |||||||| | | || | ||| ||||||||||| || || ||||||||
Sbjct 130 TCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTG 71
Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088
|| |||||| ||| | | ||| | ||||||| || |||||||| | || |
Sbjct 70 TCTTGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGTTCCACTTCCAAAGTGATA 11
Query 132089 GTTTTACCAG 132098
||||| ||||
Sbjct 10 GTTTTTCCAG 1
>seq718
Length=674
Score = 127 bits (140), Expect = 2e-24
Identities = 157/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968
||||| |||||||| | | || |||||||| || || || ||||| | || || |
Sbjct 260 CGCAACACCAAATGCAAAGTGGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCA 201
Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028
||||| | |||||||| | | || | ||| |||||||||||||| || ||||||||
Sbjct 200 TCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTG 141
Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088
|| |||||| ||| | | ||| | ||||||| ||||| ||||| | || |
Sbjct 140 TCTTGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGCTCAACTTCCAAAGTAATG 81
Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
||||| ||||||| |||||| | ||||||||||||
Sbjct 80 GTTTTTCCAGTCAAAGTTTTCACGAAAATCTGCAT 46
Score = 96.9 bits (106), Expect = 3e-15
Identities = 115/156 (74%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027
|||||| | ||||| || | | || | ||| ||||||||||| || || ||||||||
Sbjct 664 ATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTT 605
Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087
||| |||||| ||| | | ||| | |||||||| ||||| ||||| | || |
Sbjct 604 ATCTTGAATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGCTCAACTTCCAAAGTGAT 545
Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
||||| ||||||| |||||| | |||||| |||||
Sbjct 544 AGTTTTTCCAGTCAAAGTTTTCACGAAAATTTGCAT 509
Score = 93.3 bits (102), Expect = 4e-14
Identities = 154/222 (69%), Gaps = 7/222 (3%)
Strand=Plus/Minus
Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG---- 131964
||||| ||||| || | | || |||||||| || || || ||||| | || |
Sbjct 495 CGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTGAGAGTTCNGAGT 436
Query 131965 -CGA--ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021
||| |||||| | ||||| || | | || | ||| ||||||||||| || || ||
Sbjct 435 TCGACCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACC 376
Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081
|||||| || ||||| ||| | | ||| | ||||||| || || ||||| |
Sbjct 375 TTCTTTGTCCTGTATTTTAGCTTTGACATTTTCAATTGTATCGGAAGGTTCAACTTCCAA 316
Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| | ||||| ||||||| |||||| | ||||||||||||
Sbjct 315 AGTGATTGTTTTTCCAGTCAAAGTTTTAACGAAAATCTGCAT 274
>seq4581
Length=275
Score = 95.1 bits (104), Expect = 1e-14
Identities = 94/122 (77%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968
||||| |||||||| | |||| ||||| |||||||| || ||||||| || | |
Sbjct 133 CGCAATACCAAATGCAAAGTTGATTCTTTCTGAATGTTATAATCGCTCAATGTTCTACCA 192
Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028
||||| | ||||| || | | | |||||||| || ||||||||||| || |||||||||
Sbjct 193 TCTTCCAATTGTTTGCCAGCAAAAATTAGACGTTGCTGATCTGGAGGAATACCTTCTTTA 252
Query 132029 TC 132030
||
Sbjct 253 TC 254
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476498838909600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |