Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq135 161 1e-34 seq718 140 3e-28 seq620 87.8 2e-12 >seq135 Length=1279 Score = 161 bits (178), Expect = 1e-34 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC-C 134545 || || | ||| ||||| || | ||||| |||||||| |||||||| ||||| |||| | Sbjct 886 CCACCACGGAGACGCAATACCAAGTGTAAAGTGGATTCTTTTTGAATATTGTAATCGCTC 827 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | | | | || || | |||||||| |||||||||||||| || ||||| || || Sbjct 826 AATGTTCTACCA-TCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGG 768 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || |||||||| ||||||||||| |||||| || | || ||||| | ||| || Sbjct 767 AATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCAAC 708 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | |||||||||||| || || || |||||||||||||| ||||| Sbjct 707 TTCCAAAGTAATGGTTTTTCCAGTCAATGTTTTAACGAAAATCTGCAT 660 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| |||||||| | ||| | || ||||| ||||| || || || |||| Sbjct 658 CCACCACGGAGACGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTG 599 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || || || | |||||||| |||||||||| ||| |||||||| || || Sbjct 598 AGAGTTCGACCATCTTCCAATTGTTTGCCAGCAAAAATCAGACGTTGCTGATCTGGAGGA 539 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || |||||||| ||||||||||| |||||| || | || ||||| | |||||| Sbjct 538 ATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCCACT 479 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | ||||||||| || || || |||||||| || ||||| ||||| Sbjct 478 TCCAAAGTAATGGTCTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 432 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| |||||||| | ||||| |||||||| ||||| || || || |||| Sbjct 430 CCACCCCGGAGACGCAACACCAAGTGTAAAGTGGATTCTTTTTGGATATTATAATCGCTG 371 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || || || | ||||| || |||||||||||||| || ||||| || || Sbjct 370 AGAGTTCGACCATCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 311 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || |||||||| || || ||||| |||||| || | || ||||| | ||| || Sbjct 310 ATACCTTCTTTGTCCTGTATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGTTCAACT 251 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | ||| || ||||| || || || ||||| |||||||| ||||| Sbjct 250 TCCAAAGTGATTGTTTTTCCAGTCAATGTTTTCACGAAAATCTGCAT 204 Score = 107 bits (118), Expect = 2e-18 Identities = 146/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC-C 134545 || || | |||||||||||| | || | |||||||| || || || ||||| |||| | Sbjct 202 CCACCACGGAGTCGCAACACCAAATGCAAAGTGGATTCTTTCTGGATATTGTAATCGCTC 143 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | | | | || || | ||||| || || ||||||||||| || ||||| || || Sbjct 142 AATGTTCTACCA-TCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGG 84 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || |||||||| ||||||||||| |||||| || | || ||||| | |||||| Sbjct 83 AATACCTTCTTTGTCTTGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGTTCCAC 24 Query 134666 GTCGAGAGTAATGGTTTTACC 134686 || | ||| || ||||| || Sbjct 23 TTCCAAAGTGATAGTTTTTCC 3 Score = 82.4 bits (90), Expect = 8e-11 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC-C 134545 || || | |||||||||||| | || | |||||||| || || || ||||| |||| | Sbjct 1165 CCACCACGGAGTCGCAACACCAAATGCAAAGTGGATTCTTTCTGGATATTGTAATCGCTC 1106 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | | || | || || | ||||| || |||||||||||||| |||||||| ||||| Sbjct 1105 AATGTTCTGCCA-TCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGCTGATCTGGCGG 1047 Query 134606 TATGCCT 134612 || ||| Sbjct 1046 AATACCT 1040 >seq718 Length=674 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | |||||||||||| | || | |||||||| ||||| || || || |||| Sbjct 272 CCACCACGGAGTCGCAACACCAAATGCAAAGTGGATTCTTTTTGGATATTATAATCGCTG 213 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || || || | ||||| || || ||||||||||| || ||||| || || Sbjct 212 AGAGTTCGACCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGA 153 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || |||||||| ||||||||||| |||||| || | || ||||| | || || Sbjct 152 ATACCTTCTTTGTCTTGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGCTCAACT 93 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | |||||||||||| || || |||||||| |||||||| ||||| Sbjct 92 TCCAAAGTAATGGTTTTTCCAGTCAAAGTTTTCACGAAAATCTGCAT 46 Score = 123 bits (136), Expect = 3e-23 Identities = 168/234 (72%), Gaps = 7/234 (3%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| |||||||| | ||| | || ||||| ||||| || || || |||| Sbjct 507 CCACCACGGAGACGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTG 448 Query 134547 A-----CGGTGTGAGAG--TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATC 134599 | | | || || || || | |||||||| || ||||||||||| || ||||| Sbjct 447 AGAGTTCNGAGTTCGACCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATC 388 Query 134600 GGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGA 134659 || || || |||||||| || || ||||| |||||| || | ||| ||||| | Sbjct 387 TGGTGGAATACCTTCTTTGTCCTGTATTTTAGCTTTGACATTTTCAATTGTATCGGAAGG 328 Query 134660 TTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||| || || | ||| || ||||| || || ||||||||||||||||| ||||| Sbjct 327 TTCAACTTCCAAAGTGATTGTTTTTCCAGTCAAAGTTTTAACGAAAATCTGCAT 274 Score = 114 bits (126), Expect = 1e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 134568 TGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATT 134627 |||||||| || ||||||||||| || ||||| || || || |||||||| ||||||||| Sbjct 654 TGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTATCTTGAATT 595 Query 134628 TTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCG 134687 || |||||| || | || ||||| | || || || | ||| || ||||| || Sbjct 594 TTAGCTTTGACATTTTCAATAGTATCGGAAGGCTCAACTTCCAAAGTGATAGTTTTTCCA 535 Query 134688 GTTAAAGTTTTAACGAAAATTTGCAT 134713 || |||||||| |||||||||||||| Sbjct 534 GTCAAAGTTTTCACGAAAATTTGCAT 509 >seq620 Length=8710 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 134610 CCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCG 134669 |||||||| |||||||| || |||||| || | ||| ||||| | |||||| || Sbjct 8389 CCTTCTTTGTCTTGAATCTTAGCTTTGACGTTTTCAATTGTATCGGAAGGTTCCACTTCC 8330 Query 134670 AGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTT 134720 | ||| || ||||| || || ||||||||||| ||||||||||| ||| || Sbjct 8329 AAAGTGATAGTTTTTCCAGTCAAAGTTTTAACAAAAATTTGCATCTTGATT 8279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505279252327200