Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq10223 560 1e-154 seq4298 325 5e-84 >seq10223 Length=44262 Score = 560 bits (620), Expect = 1e-154 Identities = 1198/1771 (68%), Gaps = 28/1771 (2%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || ||||| ||||| ||| | ||||| || || |||||||| | ||| Sbjct 20293 TGAAATTCGCCTGATAAAACTCTCCGATTATAAATGTTGGAAGTGTATGGTTCAAATGAT 20352 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 ||||| ||||| | |||||||| || ||||| || ||||| || || || | | |||| Sbjct 20353 TCATTGTTTCCTAAGATTTGAGCTGTCGATGCGGTCGGCATCGGAGCAACTAGAAGACTA 20412 Query 68839 TTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGAT 68898 |||| ||||| | | | || || ||||| | | || ||||||||| ||||| | Sbjct 20413 TTTCGTAGACCGTATTTAGCAATATTTTCTTTCAATTTTTCCCAATCCCAGAGATCGGTA 20472 Query 68899 GGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATAT 68958 ||| || ||| | ||||||||| ||||| || || ||| ||||| | ||| Sbjct 20473 GGTTTGCGATCCCACATATCGTATTGGAGAATACCTTTCGATGCGGGAGATCCTTCATAG 20532 Query 68959 GTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAA 69018 |||||||||||||| | |||||| |||||| || ||||||||||| |||||||| Sbjct 20533 GTTTCATAAGGTCCATGGATAGCAGCTAATTCACAGCTAGCCTCTAATGCTCCGTAATAG 20592 Query 69019 ATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGT 69078 |||||||||||||| | |||| | | || ||||| ||| || || ||||| | | Sbjct 20593 ATTGTTTCGAAAATTTGTATATTCAATTTTTTCGCTTCATCACTTTCAAAAGGATA-TCT 20651 Query 69079 AAA-AGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTT 69137 || | ||| || ||||| || | || || || || || || || ||||| |||| | | Sbjct 20652 AAGCAAAATGAACGCATCAGCTAGACCTTGTACGCCGATTCCAATCGGTCTGTGTCGCAT 20711 Query 69138 ATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATT 69197 |||||||| |||||| || | ||||||||||| | ||| || ||||| || | ||| Sbjct 20712 ATTTGAACGACGAGCTTCCGGCAAGGGATAATAATTTACATCAATTATTTTGTTCAAATT 20771 Query 69198 T--CGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCATCTATA 69255 | || || ||||| | | || || | | |||||| | | || | | Sbjct 20772 TTTCGTCATA--ACTTTGATGATGTTTTTCAACTCTCCAAAATCGTAGGATAGATTTTTT 20829 Query 69256 ACAA--ACATATTCAGT----GCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAA 69309 | ||| ||| | || || || |||||||||||||| |||| || | | Sbjct 20830 TGATTGACAAATTTTGGTAACGCAACCGAAGCTAGATTACAAACAGCTATTTCGTCTGGC 20889 Query 69310 TTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGC 69369 || ||||| | ||||| || || |||||| |||||||| || || ||||||| Sbjct 20890 GATGAATATTCAACAATCTCGGTGCAAAGATTAGAGCATTTGATGGTGCCAAGATTTTTT 20949 Query 69370 TGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATC 69429 |||||| ||| | ||||| || ||||| | || || || || || ||||| | | Sbjct 20950 TGATTAGATTTTCTATTACAATGATCTTTGTAGACCATGAATGGTGTTCCGGTTTCCACC 21009 Query 69430 TGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTG---TAACGC 69486 |||| |||| || | ||||| | | ||| ||| || ||| || || Sbjct 21010 TGAGCATCGACTATTGCGAACCAAAGTTCACGAGCTGGAATTT--GT-TTGCGATATCGA 21066 Query 69487 TTCTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAAT 69546 |||||||| ||||||| ||| || ||||||||| || ||||||||||| | |||| Sbjct 21067 TTCTCTTTCTCATATTTCTCATAGAGAGCTTCGAATTCTTCGCCCCAAACATCTTGCAAT 21126 Query 69547 CCAGGACATTCATTTGGACACATCAATGACCACACATCATCA--TCCTTAACTCGTTTCA 69604 ||||||||||| || || |||||||| ||||| || |||| | | ||| |||||| Sbjct 21127 CCAGGACATTCTTTGGGGCACATCAACGACCAAACCCCATCGGTTTCGCAAC--GTTTCA 21184 Query 69605 TAAATAGATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTT 69663 | || | ||| || ||||| | || ||| || |||||||||| | |||||| Sbjct 21185 TGAACAAATCCGGTATCCATAATGC-ATAGAAAAGATCTCTGGCACGTAATTCTTCTGAG 21243 Query 69664 CCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATAT 69723 || |||||| ||| | || | ||| || | |||||| | |||||| ||||| | |||| Sbjct 21244 CCAGTATTTCGTTTCAAATTTAAAAAGTCGAAAATATCTGCATGCCACGGTTCCAAATAT 21303 Query 69724 ATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTA 69783 || || | | || || || ||||| || || ||||| | || | || || | || Sbjct 21304 ATTGCGAAAGCACCAGGACGCTTATTACCACCTTGATCGACATAACGAGCGGTATCGTTG 21363 Query 69784 TAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTT 69843 || |||| || |||||||| | |||||| || | ||| || || ||| || || | Sbjct 21364 TAAACTCGCAACATCGGAACCAAACCATTTGAATGACCTTTGGTGCCAACTATGTACGAT 21423 Query 69844 CCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGA 69903 || |||| |||||| | || | ||||| || || || || || || || | | Sbjct 21424 CCATTTGCTCGAATACAATGAACATTAAGACCGATGCCACCGGCTGACTTCGATATAATA 21483 Query 69904 GCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCAT-GTTAAGAAG 69962 ||||| ||||||| || || || ||||| || || |||||||| ||| || || || Sbjct 21484 GCACATTGTTTCAACGTATCGTAAATACCTTCAATACTATCATCGGCCATCGTCAATAA- 21542 Query 69963 AAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTG 70022 |||||| |||||||||| |||| | || || | |||||| || ||||| || ||||| Sbjct 21543 AAAACATGAAGACATTTGAGGATGGGTTGTACCAGAATTAAACAAAGTAGGTGAGGCGTG 21602 Query 70023 AGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTG 70082 || || || ||| | ||||| || || || || || || || ||||| | Sbjct 21603 TGTAAAAAGACCTTTAGACATTAGATTATACGTCTCGATGGCCGAATCAATATCTTCTTT 21662 Query 70083 ATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATT 70142 ||| || || || ||||| | ||||||||||||||| |||| ||| || ||| ||| Sbjct 21663 ATGTATACCGATGGCGACTCTCATCAACATATGCTGTGGTCTTTCGACAACTTTCCCATT 21722 Query 70143 TATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTC 70202 | | || || || | | | ||||| || |||||||| ||||| ||| || Sbjct 21723 CACTCGTAATAGATAGCTTCGTAATAAGGTTTTGAAACCAAAATAATTGTAACTAAAATC 21782 Query 70203 TCTTTCGTAAATAATAACAGAATTTAGTTTATCCTTATATTTGGTAACTATATCCATAAC 70262 || || ||||| || | ||||| || ||| | | | || || | ||| Sbjct 21783 TCGATCATAAATTATCGCTGAATTGAGACGATCAGAGTTATCCATTACGATTTTATAAAC 21842 Query 70263 AGTAGGTGAGATAATCGGAGATCG-TTTACCATTTTTAGGATTAACATAGTTGAATAAAT 70321 | | | |||||||||| || | ||| || |||| || ||||| ||| | | || Sbjct 21843 ATCATCGGCGATAATCGGA-ATAGATTTGCCTGTTTTCTCATCGACATAATTGTAGAGAT 21901 Query 70322 CTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTC 70381 | | || ||||| || ||| || || || || |||| ||| || || | |||| Sbjct 21902 CATGAATGACATCTGAGAAATTTTTCTTCGTCTCTTTTTGTAGATTAGAAATAGAGATTC 21961 Query 70382 TGGCTGCTAGAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAG 70441 || || |||| |||||| || | ||||||||| || ||||| || || ||||||| Sbjct 21962 GAGCAGCGAGAACAGCATAATCGGTATGTTGTGTTGTCATCGTAGCAGCGATCTCCGCAG 22021 Query 70442 CTAACGTATCTAATTCTATAGTTGTAACTCC 70472 ||| | ||| |||| | |||||||| || Sbjct 22022 CTAGCTCATCCAATTGGACTGTTGTAACGCC 22052 Score = 129 bits (142), Expect = 8e-25 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 68365 TTATCCAATGTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCG 68424 ||||||| || || ||||||| || || ||| | ||||||||||| ||||| || Sbjct 19863 TTATCCACAGTGAATTGAATGGCATTGGCCGCTGGTCTAGTACGTAGATAATACATTCCC 19922 Query 68425 GTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGA 68484 ||||||| ||| | ||| | ||||||||||| ||| | ||||| | | | Sbjct 19923 GTTTTCAAACCATTTCGCCAGCAATAGAAATGCATCGATGTCATTTTGGCCATAGTAGCC 19982 Query 68485 TCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCC 68544 || || ||||||||||||| |||||||||||||||||||| || || | |||| | ||| Sbjct 19983 TCAGCGATATGAATATTCAAAGATTGACTTTGATCGATGAACGCACCACGATCTACAGCC 20042 Query 68545 ATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCTT 68585 || | ||| || || ||||| || ||||||| ||||| Sbjct 20043 ATCTCACAAATTCTTTTCTGAGGGATCTCCCAAACGGTCTT 20083 >seq4298 Length=5336 Score = 325 bits (360), Expect = 5e-84 Identities = 617/900 (69%), Gaps = 21/900 (2%) Strand=Plus/Minus Query 39324 TTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATAT 39383 ||||||| ||||| |||| ||||| ||||||||||||||||| || ||||| || || | Sbjct 2288 TTTTTTGATATTCTGCAACACGTTTTTCGAAAAAATTAGTTTTACCCTCCAAAGAGATCT 2229 Query 39384 TTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAA-ATCCTAATTCTGAA 39442 |||||||||| || ||||| ||| ||| || ||| || |||| | || Sbjct 2228 GTTCCATGAAAGAGAATGGATTTTTTGTATTGTAAAATTTGCCAACATCC-AGCTCGACC 2170 Query 39443 ATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATG 39502 | ||| | ||| || |||| ||||| |||||| | ||| ||||| || Sbjct 2169 AACAAACGATCAGCGCAGTATTCGATGTACTCACTCATCAAAGTGCTATTGATTCCGATC 2110 Query 39503 AGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATT 39562 | || || | || || || | ||| |||| || || || || || | || | Sbjct 2109 AAGGAGACAGGCAAGGCGTCGGTCAAAAATTCTTGCTCAATCTCGACCGCTTTGGTGACA 2050 Query 39563 ATCGATGTTACTACCTCATCACTCG-----GTGGATGCAATAAATGTTTAAACATTAAGC 39617 ||| | | | || |||| || || ||| | | ||| || | || | Sbjct 2049 ATC-----TTCAAGATCTTCACCCGAGAAGGTCGATTGACGATGTGTCGGAAAAGCAAAC 1995 Query 39618 AGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTC 39677 | || || |||||||| || || ||||| | || ||||| ||| || || | | Sbjct 1994 AAGCAAAATCACAATGAAGTCCTTCATCACGCGAGATCAATTCATTACTGAAAGTCAAGC 1935 Query 39678 CAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGA 39737 ||||||| || || || ||||| |||||||| || || ||||| || ||||| || |||| Sbjct 1934 CAGGCATCAGTCCTCGTTTTTTAAGCCAAAAGATAGCCGCAAACGAGCCAGAGAAAAAGA 1875 Query 39738 TGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACT---TGTATCATTATGTA 39794 | ||||| || || || || |||||||| | || | | || | |||||| || Sbjct 1874 TTCCTTCGACGGCAGCGAACGCAACAAGACGTTCAGCAAAGCTAACTCTATCATCTTGAG 1815 Query 39795 TCCACTTCTGT--GCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 39852 |||| |||| ||||| | |||||||||| |||||||||| ||||| || ||||| Sbjct 1814 TCCA--TCTGATAGCCCATTTCGCTTTCTTCTCGACACAAGGCAATGTTTGAATGGCATT 1757 Query 39853 AAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACAT 39912 || ||| ||| | | |||| ||||||| | ||| |||| || | || |||||| Sbjct 1756 GAAAAGAAAATCTCTCTCATATTTATCTTTTATATAGGTATTGATGAGCAACGAATACAT 1697 Query 39913 TTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT 39972 ||| || || || ||||| || || ||||||||||| |||||||||| || || | || Sbjct 1696 TTCAGAGTGAATATTTTCGATGGCGATCTGAAATCCATAAAAACATCGAGCCTCTGGTAT 1637 Query 39973 TTGTACCTCT-GAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGG 40031 || || || ||| ||| | || || | ||| ||||| |||||||||||||| || | Sbjct 1636 CTGAACATCACGAATGAAA-CGCTCAGCTAGATTCTCATTAACTATTCCATCACTTGCAG 1578 Query 40032 CAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGT 40091 |||| ||||| || ||||| || |||| |||||||| |||| ||||| | Sbjct 1577 CAAAGAATGCTAACACATGAGAGATGAAATGTTTTTCATTCTTATTCAACGAGTTCCAAT 1518 Query 40092 CATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTT 40151 || | ||| || ||| |||||||| ||||||||||||| ||||| || || | Sbjct 1517 GATCTAGATCGCGACTTAAATCGACTTCTTCGACTGTCCAAAACGATGCCTCCGCTTTCT 1458 Query 40152 TGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTTT 40211 ||||||| | ||| ||||| ||||| |||||||| | |||||||| ||| ||||||| Sbjct 1457 TGTACATCTCCCAGATATCTTTGTATTGAATTGGAAACAAAACAAATCGATTCGGATTTT 1398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686746861250400