Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10]
18,860 sequences; 56,262,437 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq4298 318 5e-82
seq8097 107 2e-18
>seq4298
Length=5336
Score = 318 bits (352), Expect = 5e-82
Identities = 618/906 (68%), Gaps = 20/906 (2%)
Strand=Plus/Plus
Query 43676 TTGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGG 43735
||||| |||||||||| | | ||||| |||||||||||||||| | || || |||
Sbjct 1388 TTGCTACGAGAAAATCCGAATCGATTTGTTTTGTTTCCAATTCAATACAAAGATATCTGG 1447
Query 43736 CAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAA 43795
| |||||||| ||||| |||| || |||||||||| |||||||| ||||| | |
Sbjct 1448 GAGATGTACAAGAAAGCGGAGGCATCGTTTTGGACAGTCGAAGAAGTCGATTTAAGTCGC 1507
Query 43796 GACTTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTG 43855
|| ||| ||||||| | || || | ||||||||||| || ||| || ||
Sbjct 1508 GATCTAGATCATTGGAACTCGTTGAATAAGAATGAAAAACATTTCATCTCTCATGTGTTA 1567
Query 43856 GCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAA 43915
|| || |||||||| || || || ||||| ||||| ||| | | | || || |
Sbjct 1568 GCATTCTTTGCTGCAAGTGATGGAATAGTTAATGAGAATCTAGCTGAGCGTTTCATTCGT 1627
Query 43916 GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATT 43975
|| ||||| ||||||| || |||||||||||||| ||||| || ||||| |||||||||
Sbjct 1628 GATGTTCAGATACCAGAGGCTCGATGTTTTTATGGATTTCAGATCGCCATCGAAAATATT 1687
Query 43976 CATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCAT 44035
|| || |||||||| | || || |||| || || |||||| | |||| ||
Sbjct 1688 CACTCTGAAATGTATTCGTTGCTCATCAATACCTATATAAAAGATAAATATGAGAGAGAT 1747
Query 44036 CGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTT 44095
| || ||||| || ||||| | ||| | | | ||||| | ||||| |
Sbjct 1748 TTTCTTTTCAATGCCATTCAAACATTGCCTTGTGTCGAGAAGAAAGCGAAATGGGCTATC 1807
Query 44096 AAATGGATAAATTCAA-ATGA------TTCTTTTGGAGAACGACTTGTCGCGTTTGCAGT 44148
| |||| | |||| |||| | |||| ||||| ||||| ||||| || |
Sbjct 1808 AGATGG----ACTCAAGATGATAGAGTTAGCTTTGCTGAACGTCTTGTTGCGTTCGCTGC 1863
Query 44149 TGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGG 44208
|| ||||| || || || || || ||||||||||| || |||||| | || ||||||||
Sbjct 1864 CGTCGAAGGAATCTTTTTCTCTGGCTCGTTTGCGGCTATCTTTTGGCTTAAAAAACGAGG 1923
Query 44209 TTTGATGCCTGGGTTGACGTTTTCA--AATGAGTTAATAAGTCGTGATGAAGGCTTACAT 44266
|||||||||| ||||| ||||| ||||| || || ||||||||||| | |||
Sbjct 1924 ACTGATGCCTGGCTTGAC--TTTCAGTAATGAATTGATCTCGCGTGATGAAGGACTTCAT 1981
Query 44267 TGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACA 44326
|| ||||||||||| ||| | | || | | | | || ||||| | ||
Sbjct 1982 TGTGATTTTGCTTGTTTGCTTTTCCGACACAT---CGTCAATCGACCTTCTCGGGTGAAG 2038
Query 44327 ATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTA 44386
|| | ||||| | || || |||| || ||||||||| |||| || ||
Sbjct 2039 ATCTTGAAGATTGTCACCAAAGCGGTCGAGATTGAGCAAGAATTTTTGACCGACGCCTTG 2098
Query 44387 CCTGTAAATTTAATAGGAATGAAT-GAACTTTTGATGAACCAATATATTGAATACATTGC 44445
||||| || || ||||| ||| | || |||||||| | || || |||||| ||
Sbjct 2099 CCTGTCTCCTTGATCGGAATCAATAGCAC-TTTGATGAGTGAGTACATCGAATACTGCGC 2157
Query 44446 AGATCGTTTACTTTTGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGA 44505
|||||||| | | || |||| | | ||| || | | | |||| || ||
Sbjct 2158 TGATCGTTTGTTGGTCGAGCTGGATGTTGGCAAATTTTACAATACAAAAAATCCATTCTC 2217
Query 44506 TTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGA 44565
||| |||||| | || || ||||| || ||||| || ||||| |||||||| |||| |||
Sbjct 2218 TTTCATGGAACAGATCTCTTTGGAGGGTAAAACTAATTTTTTCGAAAAACGTGTTGCAGA 2277
Query 44566 ATATCA 44571
||||||
Sbjct 2278 ATATCA 2283
>seq8097
Length=7218
Score = 107 bits (118), Expect = 2e-18
Identities = 374/580 (64%), Gaps = 14/580 (2%)
Strand=Plus/Plus
Query 19242 AATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGT 19301
||| || |||||| ||| || ||| || ||| ||||| | || || | || | ||
Sbjct 3967 AATCGGTGGATTGGATAAGGAATTTAATGCAATATTTCGCCGTGCTTTCGCTTCCAGAGT 4026
Query 19302 TTTTTCTGCAGATGTCATTAAACAA-TTGGGATGTAAACATGTTCGTGGACTTTTGCTTT 19360
|||| | | || ||||| | || |||| || ||||||||||| ||| || || | |
Sbjct 4027 TTTTCCGCCCGAAATCATTGATGAACTTGGCATC-AAACATGTTCGAGGAATTCTGTTGT 4085
Query 19361 ATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTA--- 19417
||| || || || ||| ||||| | || || ||| | | | ||| | | |
Sbjct 4086 TTGGACCTCCTGGAACTGGCAAAACGCTGATGGCCAGACAGATAGGGAAAATGTTGAATG 4145
Query 19418 CAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAAT 19477
| | | ||||| |||||||| || ||||| | || || | ||||| ||||| |||
Sbjct 4146 CTAGAGAACCT---AAAATTGTCAACGGTCCACAGATTCTAGACAAATACGTAGGAGAAT 4202
Query 19478 CGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGC 19537
| |||| || | || |||| | || |||||||||||||| ||| | | ||
Sbjct 4203 CTGAAGCTAACATTCGGAAACTGTTCGAGGATGCTGAAGAAGAACAGAAAAGAATGGGCA 4262
Query 19538 GCAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAG 19597
||| || |||||| || ||||| | || ||| | || ||||| || || |||
Sbjct 4263 TCAATAGCGGTTTGCATATAATAATTTTCGACGAAATAGATGCAATTTGCAAAGCTCGAG 4322
Query 19598 GTTCTGGTGTA------AATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAAT 19651
| || | | | | |||||| ||||| || || || |||||| | || | |||
Sbjct 4323 GATCAGTGGCAGGCAATACTGGAGTTCATGATACAGTCGTTAATCAATTATTGGCCAAAA 4382
Query 19652 TAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAAT 19711
| || || || | | || |||||||| || ||||| ||||| || || | ||
Sbjct 4383 TTGATGGCGTAGATTCGTTAAACAATATTTTGGTAATTGGAATGACAAACAGGCGAGATA 4442
Query 19712 TAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTAC 19771
| || || || || | ||||| ||| | || || | |||| ||||||| | | |
Sbjct 4443 TGATTGATGAAGCTCTACTTCGACCTGGTAGATTAGAGGTTCAGATGGAAATTAGCCTTC 4502
Query 19772 CCGATGAATGTGGACGTGTGGAAATTTTAAACATACATAC 19811
| ||||| ||| | | |||| | ||||| |||||
Sbjct 4503 CAAATGAAGATGGCAGAATTCAAATCCTTAACATTCATAC 4542
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397364642254300
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |