Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq4298 318 5e-82 seq8097 107 2e-18 >seq4298 Length=5336 Score = 318 bits (352), Expect = 5e-82 Identities = 618/906 (68%), Gaps = 20/906 (2%) Strand=Plus/Plus Query 43676 TTGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGG 43735 ||||| |||||||||| | | ||||| |||||||||||||||| | || || ||| Sbjct 1388 TTGCTACGAGAAAATCCGAATCGATTTGTTTTGTTTCCAATTCAATACAAAGATATCTGG 1447 Query 43736 CAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAA 43795 | |||||||| ||||| |||| || |||||||||| |||||||| ||||| | | Sbjct 1448 GAGATGTACAAGAAAGCGGAGGCATCGTTTTGGACAGTCGAAGAAGTCGATTTAAGTCGC 1507 Query 43796 GACTTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTG 43855 || ||| ||||||| | || || | ||||||||||| || ||| || || Sbjct 1508 GATCTAGATCATTGGAACTCGTTGAATAAGAATGAAAAACATTTCATCTCTCATGTGTTA 1567 Query 43856 GCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAA 43915 || || |||||||| || || || ||||| ||||| ||| | | | || || | Sbjct 1568 GCATTCTTTGCTGCAAGTGATGGAATAGTTAATGAGAATCTAGCTGAGCGTTTCATTCGT 1627 Query 43916 GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATT 43975 || ||||| ||||||| || |||||||||||||| ||||| || ||||| ||||||||| Sbjct 1628 GATGTTCAGATACCAGAGGCTCGATGTTTTTATGGATTTCAGATCGCCATCGAAAATATT 1687 Query 43976 CATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCAT 44035 || || |||||||| | || || |||| || || |||||| | |||| || Sbjct 1688 CACTCTGAAATGTATTCGTTGCTCATCAATACCTATATAAAAGATAAATATGAGAGAGAT 1747 Query 44036 CGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTT 44095 | || ||||| || ||||| | ||| | | | ||||| | ||||| | Sbjct 1748 TTTCTTTTCAATGCCATTCAAACATTGCCTTGTGTCGAGAAGAAAGCGAAATGGGCTATC 1807 Query 44096 AAATGGATAAATTCAA-ATGA------TTCTTTTGGAGAACGACTTGTCGCGTTTGCAGT 44148 | |||| | |||| |||| | |||| ||||| ||||| ||||| || | Sbjct 1808 AGATGG----ACTCAAGATGATAGAGTTAGCTTTGCTGAACGTCTTGTTGCGTTCGCTGC 1863 Query 44149 TGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGG 44208 || ||||| || || || || || ||||||||||| || |||||| | || |||||||| Sbjct 1864 CGTCGAAGGAATCTTTTTCTCTGGCTCGTTTGCGGCTATCTTTTGGCTTAAAAAACGAGG 1923 Query 44209 TTTGATGCCTGGGTTGACGTTTTCA--AATGAGTTAATAAGTCGTGATGAAGGCTTACAT 44266 |||||||||| ||||| ||||| ||||| || || ||||||||||| | ||| Sbjct 1924 ACTGATGCCTGGCTTGAC--TTTCAGTAATGAATTGATCTCGCGTGATGAAGGACTTCAT 1981 Query 44267 TGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACA 44326 || ||||||||||| ||| | | || | | | | || ||||| | || Sbjct 1982 TGTGATTTTGCTTGTTTGCTTTTCCGACACAT---CGTCAATCGACCTTCTCGGGTGAAG 2038 Query 44327 ATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTA 44386 || | ||||| | || || |||| || ||||||||| |||| || || Sbjct 2039 ATCTTGAAGATTGTCACCAAAGCGGTCGAGATTGAGCAAGAATTTTTGACCGACGCCTTG 2098 Query 44387 CCTGTAAATTTAATAGGAATGAAT-GAACTTTTGATGAACCAATATATTGAATACATTGC 44445 ||||| || || ||||| ||| | || |||||||| | || || |||||| || Sbjct 2099 CCTGTCTCCTTGATCGGAATCAATAGCAC-TTTGATGAGTGAGTACATCGAATACTGCGC 2157 Query 44446 AGATCGTTTACTTTTGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGA 44505 |||||||| | | || |||| | | ||| || | | | |||| || || Sbjct 2158 TGATCGTTTGTTGGTCGAGCTGGATGTTGGCAAATTTTACAATACAAAAAATCCATTCTC 2217 Query 44506 TTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGA 44565 ||| |||||| | || || ||||| || ||||| || ||||| |||||||| |||| ||| Sbjct 2218 TTTCATGGAACAGATCTCTTTGGAGGGTAAAACTAATTTTTTCGAAAAACGTGTTGCAGA 2277 Query 44566 ATATCA 44571 |||||| Sbjct 2278 ATATCA 2283 >seq8097 Length=7218 Score = 107 bits (118), Expect = 2e-18 Identities = 374/580 (64%), Gaps = 14/580 (2%) Strand=Plus/Plus Query 19242 AATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGT 19301 ||| || |||||| ||| || ||| || ||| ||||| | || || | || | || Sbjct 3967 AATCGGTGGATTGGATAAGGAATTTAATGCAATATTTCGCCGTGCTTTCGCTTCCAGAGT 4026 Query 19302 TTTTTCTGCAGATGTCATTAAACAA-TTGGGATGTAAACATGTTCGTGGACTTTTGCTTT 19360 |||| | | || ||||| | || |||| || ||||||||||| ||| || || | | Sbjct 4027 TTTTCCGCCCGAAATCATTGATGAACTTGGCATC-AAACATGTTCGAGGAATTCTGTTGT 4085 Query 19361 ATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTA--- 19417 ||| || || || ||| ||||| | || || ||| | | | ||| | | | Sbjct 4086 TTGGACCTCCTGGAACTGGCAAAACGCTGATGGCCAGACAGATAGGGAAAATGTTGAATG 4145 Query 19418 CAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAAT 19477 | | | ||||| |||||||| || ||||| | || || | ||||| ||||| ||| Sbjct 4146 CTAGAGAACCT---AAAATTGTCAACGGTCCACAGATTCTAGACAAATACGTAGGAGAAT 4202 Query 19478 CGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGC 19537 | |||| || | || |||| | || |||||||||||||| ||| | | || Sbjct 4203 CTGAAGCTAACATTCGGAAACTGTTCGAGGATGCTGAAGAAGAACAGAAAAGAATGGGCA 4262 Query 19538 GCAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAG 19597 ||| || |||||| || ||||| | || ||| | || ||||| || || ||| Sbjct 4263 TCAATAGCGGTTTGCATATAATAATTTTCGACGAAATAGATGCAATTTGCAAAGCTCGAG 4322 Query 19598 GTTCTGGTGTA------AATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAAT 19651 | || | | | | |||||| ||||| || || || |||||| | || | ||| Sbjct 4323 GATCAGTGGCAGGCAATACTGGAGTTCATGATACAGTCGTTAATCAATTATTGGCCAAAA 4382 Query 19652 TAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAAT 19711 | || || || | | || |||||||| || ||||| ||||| || || | || Sbjct 4383 TTGATGGCGTAGATTCGTTAAACAATATTTTGGTAATTGGAATGACAAACAGGCGAGATA 4442 Query 19712 TAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTAC 19771 | || || || || | ||||| ||| | || || | |||| ||||||| | | | Sbjct 4443 TGATTGATGAAGCTCTACTTCGACCTGGTAGATTAGAGGTTCAGATGGAAATTAGCCTTC 4502 Query 19772 CCGATGAATGTGGACGTGTGGAAATTTTAAACATACATAC 19811 | ||||| ||| | | |||| | ||||| ||||| Sbjct 4503 CAAATGAAGATGGCAGAATTCAAATCCTTAACATTCATAC 4542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397364642254300