Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq10223 379 2e-100 seq135 116 3e-21 seq4581 84.2 2e-11 >seq10223 Length=44262 Score = 379 bits (420), Expect = 2e-100 Identities = 885/1312 (67%), Gaps = 46/1312 (4%) Strand=Plus/Plus Query 130793 TAAATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTT 130852 ||||||||| ||| | |||||||| ||||| ||||| || || ||||| ||||| | | Sbjct 20323 TAAATGTTGGAAGTGTATGGTTCAAATGATTCATTGTTTCCTAAGATTTGAGCTGTCGAT 20382 Query 130853 GCGGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGC 130912 ||||| ||||| || |||| ||| ||| || ||||||| | | || ||| Sbjct 20383 GCGGTCGGCATCGGAGCAACTAGAAGACTATTTCGTAGACCGTATTTAGCAATATTTTCT 20442 Query 130913 TTCAATTCATCCCAATCCCATAGAGAGGTAGGTTTGACATTGTTCCACATATCAAATTGT 130972 ||||||| ||||||||||| ||| |||||||||| | | ||||||||| |||| Sbjct 20443 TTCAATTTTTCCCAATCCCAGAGATCGGTAGGTTTGCGA---TCCCACATATCGTATTGG 20499 Query 130973 AGTATGCCTTTACTGGCGGGACTGGATTCGAACGATTCGTAGATTCCTTCGACACGAGCC 131032 || || ||||| |||||| ||| | | ||| || ||| | || | ||| Sbjct 20500 AGAATACCTTTCGATGCGGGAGATCCTTCATAGGTTTCATAAGGTCCATGGATAGCAGCT 20559 Query 131033 AGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTTAAT 131092 | || |||||| || || ||||||||||| || |||||| ||||||| |||| ||| Sbjct 20560 AATTCACAGCTAGCCTCTAATGCTCCGTAATAGATTGTTTCGAAAATTTGTATATTCAAT 20619 Query 131093 TGTTTCGCTTGGTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGACCC 131152 | |||||||| | || || ||||| || | | ||||| || || || || ||||| Sbjct 20620 TTTTTCGCTTCATCACTTTCAAAAGGATATCTAAGCAAAATGAACGCATCAGCTAGACCT 20679 Query 131153 TGTATCCCAACGCCCACCGGTCTATGTTTTAAATTACATTTACG-CGAACATTCGG--TG 131209 |||| || | || | |||||| ||| | ||| | ||| ||| | | ||| | Sbjct 20680 TGTACGCCGATTCCAATCGGTCTGTGTCGCATATT---TGAACGACGAGCTTCCGGCAAG 20736 Query 131210 GGATAAAGGTTAATGTCAATTATTTTGTTTAAATTGCGCACTACAATTTGTGTGACGCTT 131269 |||||| || | |||||||||||||| ||||| | | || || ||| | || Sbjct 20737 GGATAATAATTTACATCAATTATTTTGTTCAAATTTTTCGTCATAACTTTGATGATGTTT 20796 Query 131270 TTCAATTTGTCGAAATCAAACGTGCCAGTTTCGAGGTTTACAAA-TTGATTTACACATAT 131328 ||||| | | ||||| | | | ||| | || ||||| || | || || | Sbjct 20797 TTCAACTCTCCAAAATCGTAGGATAGATTTTTTTGATTGACAAATTTTGGTAACGCA-AC 20855 Query 131329 TGACGCCAGATTACAAACTGCCGTTTCGTCATAATCGC----AATACTGAACAATTTCGG 131384 || || ||||||||||| || ||||||| | || |||| | |||||| |||| Sbjct 20856 CGAAGCTAGATTACAAACAGCTATTTCGTC----TGGCGATGAATATTCAACAATCTCGG 20911 Query 131385 CGCACAAATTACTGCTCTTTATGGTGCCCAAATTTTGTTGATTGCTTTTAGCATTCACAT 131444 ||| | |||| || || |||||||| | ||||| |||||| ||| ||| || Sbjct 20912 TGCAAAGATTAGAGCATTTGATGGTGCCAAGATTTTTTTGATTAGATTTTCTATTACAAT 20971 Query 131445 GGTCCTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTGAGTTTC-AATAATGTATCGA 131503 | || ||||| | |||| | || || || ||||| || |||| || | || || ||| Sbjct 20972 GATCTTTGTAGACCATGAATGGTGTTCCGGTTTCCACCTGAGCATCGACTATTG---CGA 21028 Query 131504 A--AGAGTTTTCGAGCAGACAATTGATATTTG---TATTGGCCGCGTTTTTCGTAATTTT 131558 | | |||| ||||| | |||| | |||| ||| | ||| || || || | Sbjct 21029 ACCAAAGTTCACGAGCTG-GAATT--TGTTTGCGATATCGATTCTCTTTCTCATATTTCT 21085 Query 131559 CGTACAACGTTTCAAAGTTTTGG--CCAAACGAACTGTCCAAATTGGGACATTCGCTGGG 131616 | || | | ||| || | || | |||||| | || | ||| |||||||| |||| Sbjct 21086 CATAGAGAGCTTCGAATTCTTCGCCCCAAAC-ATCT-TGCAATCCAGGACATTCTTTGGG 21143 Query 131617 ACACATTAGCGACCACACGCCGTTCTGTT---CAACTCGCTTCATAAACAAATCCGGCAC 131673 ||||| | |||||| || || || ||| ||| || ||||| ||||||||||| | Sbjct 21144 GCACATCAACGACCAAAC-CCCATCGGTTTCGCAA--CGTTTCATGAACAAATCCGGTAT 21200 Query 131674 CCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttttCAA 131733 |||||| || || || |||||||| || | ||||||| || || || |||||| Sbjct 21201 CCATAATGCATAGAAAAGATCTCTGGCACGTAATTCTTCTGAGCCAGTATTTCGTTTCAA 21260 Query 131734 ATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTT 131793 |||||||||||| ||||| || |||||||| ||||||||||| | ||| | || || Sbjct 21261 ATTTAAAAAGTCGAAAATATCTGCATGCCACGGTTCCAAATATATTGCGAAAGCACCAGG 21320 Query 131794 GCGC---TTACCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCAACATGGG 131850 ||| ||||| ||||||| |||| |||| | | | |||||| || |||||||| || Sbjct 21321 ACGCTTATTACCACCTTGATCGACATAACGAGCGGTATCGTTGTAAACTCGCAACATCGG 21380 Query 131851 CTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTGGCTCTGATTTT 131910 ||||||| || | | || ||||||| ||||| ||||| |||| || Sbjct 21381 AACCAAACCATTTGAATGACCTTTGGTGCCAACTATGTACGATCCATTTGCTCGAATACA 21440 Query 131911 GTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGCATTTGGTTAGAGT 131970 ||||| || || || || || ||| | | || || || | || |||| | | || Sbjct 21441 ATGAACATTAAGACCGATGCCACCGGCTGACTTCGATATAATAGCACATTGTTTCAACGT 21500 Query 131971 GTTATAGATACCTTCCACGCTGTCCGCGGCAAT-GTCGACTAAAAAGCAAGAGGACAACT 132029 | || |||||||| | || || |||| || ||| | |||||| || || |||| | Sbjct 21501 ATCGTAAATACCTTCAATACTATCATCGGCCATCGTC-AATAAAAAACATGAAGACATTT 21559 Query 132030 GTTGGTGAAATGTGCCGGCTGAAAACAATGTGGGGCTGGCGTGTGTAAAAAG 132081 | | || ||| || | |||||| || || ||||||||||||||| Sbjct 21560 GAGGATGGGTTGTACCAGAATTAAACAAAGTAGGTGAGGCGTGTGTAAAAAG 21611 >seq135 Length=1279 Score = 116 bits (128), Expect = 3e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC-ATGTTGCGCTC 27091 ||||||||||| ||||| || || ||||||||||||||||| |||||| ||||| | | Sbjct 874 CGCAATACCAAGTGTAAAGTGGATTCTTTTTGAATATTGTAATCGCTCAATGTT-CTACC 816 Query 27092 GTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTT 27151 ||||| | ||||| || || |||| | ||| |||||||| || || | ||| ||||| Sbjct 815 ATCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTT 756 Query 27152 ATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTAT 27211 ||| || || ||| | |||| | || || | | ||||||||| | ||| || Sbjct 755 ATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCAACTTCCAAAGTAAT 696 Query 27212 AGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||| || |||| ||||| || || || ||||| Sbjct 695 GGTTTTTCCAGTCAATGTTTTAACGAAAATCTGCAT 660 >seq4581 Length=275 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC-ATGTTGCGCTC 27091 |||||||||||||| || || || ||||| ||||| || || |||||| ||||| | | Sbjct 133 CGCAATACCAAATGCAAAGTTGATTCTTTCTGAATGTTATAATCGCTCAATGTT-CTACC 191 Query 27092 GTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTT 27151 ||||| | ||||| || || |||| ||||| || ||||| || || | ||| ||||| Sbjct 192 ATCTTCCAATTGTTTGCCAGCAAAAATTAGACGTTGCTGATCTGGAGGAATACCTTCTTT 251 Query 27152 ATC 27154 ||| Sbjct 252 ATC 254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424836726172320