Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq10223 176 6e-39 seq8921 120 4e-22 seq2529 98.7 1e-15 seq4298 86.0 8e-12 >seq10223 Length=44262 Score = 176 bits (194), Expect = 6e-39 Identities = 455/687 (66%), Gaps = 6/687 (1%) Strand=Plus/Plus Query 110708 TAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 110767 || ||||| | |||||||||||||| ||||||| || || |||||||| || || || Sbjct 20323 TAAATGTTGGAAGTGTATGGTTCAAATGATTCATTGTTTCCTAAGATTTGAGCTGTCGAT 20382 Query 110768 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCC 110827 || || ||||| || || | | |||||| || || ||||| | | || ||| Sbjct 20383 GCGGTCGGCATCGGAGCAACTAGAAGACTATTTCGTAGACCGTATTTAGCAATATTTTCT 20442 Query 110828 TTGAGAACATCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATGTCAAACTGAA 110885 || | ||||| || || || | | ||||| | |||||||| || | || | Sbjct 20443 TTCAATTTTTCCCAATCCCAGA-GATCGGTAGGTTTG-CGATCCCACATATCGTATTGGA 20500 Query 110886 GCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCA 110945 | | |||| || |||||||| || ||| |||||||||| | || ||| |||| | Sbjct 20501 GAATACCTTTCGATGCGGGAGATCCTTCATAGGTTTCATAAGGTCCATGGATAGCAGCTA 20560 Query 110946 ATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCT 111005 |||||||||| ||||| | | | ||| ||| || ||||| || || | ||||| | Sbjct 20561 ATTCACAGCTAGCCTCTAATGCTCCGTAATAGATTGTTTCGAAAATTTGTATATTCAATT 20620 Query 111006 CCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTT 111065 || |||||||| ||||| | || | |||||| || |||| || ||||||| Sbjct 20621 TTTTCGCTTCATCACTTTCAAAAGGATATCTAAGCAAAATGAACGCATCAGCTAGACCTT 20680 Query 111066 GAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGAT 111125 | || || | ||||| ||||||||||||||||| || || || | | ||||| Sbjct 20681 GTACGCCGATTCCAATCGGTCTGTGTCGCATATTTGAACGACGAGCTTCCGGCAAGGGAT 20740 Query 111126 AAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTG-TGATTTCATGA 111184 || ||||| ||||| | | ||| | |||||| || | || ||||| |||| | | Sbjct 20741 AATAATTTACATCAATTATTTTGTTCAAATTTTTCGTCATAA-CTTTGATGATGTTTTTC 20799 Query 111185 AGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGAT 111244 | | | || |||| | | || | | || ||||||| | ||||| | || | || Sbjct 20800 AACTCTCCAAAATCGTAGGATAGATTTTTTTGATTGACAAATTTTGGTAACGCAACCGAA 20859 Query 111245 GCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAG 111304 || | ||| |||||||| | || || || || || | ||| || || || | Sbjct 20860 GCTAGATTACAAACAGCTATTTCGTCTGGCGATGAATATTCAACAATCTCGGTGCAAAGA 20919 Query 111305 TTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTG 111364 || || | || || || || | ||| ||||| ||| || | || || ||| ||| Sbjct 20920 TTAGAGCATTTGATGGTGCCAAGATTTTTTTGATTAGATTTTCTATTACAATGATCTTTG 20979 Query 111365 TAGAGCATGTAGGGCGTCCCCGTCTCC 111391 |||| |||| | || || || || ||| Sbjct 20980 TAGACCATGAATGGTGTTCCGGTTTCC 21006 >seq8921 Length=5376 Score = 120 bits (132), Expect = 4e-22 Identities = 269/399 (67%), Gaps = 4/399 (1%) Strand=Plus/Minus Query 9160 TCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAACGAGG 9219 |||||||||| | | |||||| ||| ||| ||||| || | |||||| ||| Sbjct 3730 TCTATCAAGCTAGTACATCAGAGTTGTATGGCAAGGTGCGTGAAACGCCACAATCCGAAA 3671 Query 9220 AGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGGCTCG 9279 ||| || || || ||||| || || || || || ||| | || | | | ||| Sbjct 3670 CGACTCCATTTTATCCACGATCTCCTTATGGCGTATCGAAGCTATTCGCCTACTCGATCG 3611 Query 9280 TCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATG 9339 | ||||| || || |||||| |||| || | || || || ||||| |||| Sbjct 3610 TTGTTAATTATCGAGAAGCTTACGATATGTTCGCTGTCAATGGGATTCTTTTCAATCATG 3551 Query 9340 AATCACCGAGACGAGGTGCAGACTTTGTGACCATGAAGATTAC-CGAGG-GTATCAAACA 9397 ||||||||||| |||||| | |||||||| | || || || ||||| || | || | Sbjct 3550 AATCACCGAGAAGAGGTGAAACGTTTGTGACAAGAAAAATCACTCGAGGTGTTGCGAA-A 3492 Query 9398 AATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAGATTG 9457 | |||| | |||||| || | ||||| | ||||| | | | | | ||||| Sbjct 3491 ATTCATCTA-GGTGAATTAGAATATATTGAGCTTGGTAATCTTGATTCCAAACGGGATTG 3433 Query 9458 GGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGCCGA 9517 ||| ||||| || || || |||||||| |||||| | ||| | |||||||| || | || Sbjct 3432 GGGCCACGCAAAAGATTACGTTGAAGCAATGTGGTTGATGATGCAACAAGATCAACCAGA 3373 Query 9518 CGAATATGTAGTAGCAACGGGTGAGACCCATTCAGTGAG 9556 || | ||| | ||||| ||||| | |||||||| || Sbjct 3372 AGATTTTGTCATTGCAACCGGTGAAGCTCATTCAGTCAG 3334 >seq2529 Length=30022 Score = 98.7 bits (108), Expect = 1e-15 Identities = 244/369 (66%), Gaps = 6/369 (2%) Strand=Plus/Plus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 |||||||||||||| || | | | || | ||| || ||||| || ||||| ||||| Sbjct 10405 CGATCAAAACGACCAGGCCTCAACAAAGCTTTATCGAGAATATCGACTCGATTGGTGGCA 10464 Query 11510 GCAATAACCACAATGCCAGTC---TCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGA 11566 |||| ||||||| || || || ||| ||| |||||||||||| || |||||| Sbjct 10465 GCAAGTACCACAA---CATTCGATGCAGTGTTAAAACCATCCATCTCGACTAGCAATTGA 10521 Query 11567 TTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGCTTGCCC 11626 || | || | ||| |||| || | | ||| | | ||| |||| ||| Sbjct 10522 TTTAAAGTATTCTCTTGCTCACTATGTCCGCCAATATTTCTACCACCTCGTTTGCGGCCA 10581 Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686 || ||||| || ||||||||||| | || || || |||| | || | |||| Sbjct 10582 ACAGCATCGATTTCATCAATGAACAATATGCAAGGAGCGTTTTTTCTAGCTAAAGCAAAC 10641 Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAG 11746 | ||| ||||| | | | ||| || || |||||||| || | ||| | | ||||| Sbjct 10642 ATATCACGAACTCGTGAAGGACCGACGCCTACAAACATTTCTAAAAATTCAGATCCAGAG 10701 Query 11747 CACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCC 11806 | ||| || ||||| |||| ||| || || | ||| ||| | | || ||||| Sbjct 10702 ACCGTGATAAAGGGGACTTTTGCTTCGCCGGCAGTTGCTTTGGCTAACAAAGTTTTTCCG 10761 Query 11807 GTACCTGGC 11815 || |||||| Sbjct 10762 GTTCCTGGC 10770 >seq4298 Length=5336 Score = 86.0 bits (94), Expect = 8e-12 Identities = 342/518 (66%), Gaps = 28/518 (5%) Strand=Plus/Minus Query 122671 TGGAGACCCTCATCTCGGGAAATAAGTTCATT--TGAGAAGCATAGACCTGGCATGAGAC 122728 || || || ||||| || || || | |||||| ||| | || || || ||||| || | Sbjct 1980 TGAAGTCCTTCATCACGCGAGATCAATTCATTACTGAAAGTCA-AG-CCAGGCATCAGTC 1923 Query 122729 CCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACA 122787 | || || || | |||| | ||||| ||| || || || ||||| ||||| || || || Sbjct 1922 CTCGTTTTTTAAGCCAAAAGATAGCCGCA-AACGAGCCAGAGAAAAAGATTCCTTCGACG 1864 Query 122788 CACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG-CATC---AAACCATTT 122843 || ||||||| ||| ||||| || ||| | | ||| | |||| | |||| | Sbjct 1863 GCAGCGAACGCAACAAGACGTTCAGCAAAG---CTA-ACTCTATCATCTTGAGTCCATCT 1808 Query 122844 CATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC-TTCAAATAACT 122902 || ||||||||||| |||||||| | ||| || | ||||| ||||| || ||| | Sbjct 1807 GATAGCCCATTTCGCTTTCTTCTCGACACAAGGCAATGTTTGAATGGCATTGAAAAGAAA 1748 Query 122903 GCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCCAT 122962 || | ||| || ||| || || || | | || | ||||| |||| | Sbjct 1747 ATCTC-TCTCATATTTATCTTTTATATAGGTATTGATGAGCAACGAATACATTTCAGAGT 1689 Query 122963 GAACCATTTCATTATGGC-AT-TGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGAAC 123020 ||| |||| ||||| || ||| || | || || | || || || ||||||||| Sbjct 1688 GAATATTTTC--GATGGCGATCTGAAATCCATAAAAACATCGAGCCTCTGGTATCTGAAC 1631 Query 123021 CTCATCCGCA--AAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAG 123078 ||| || | ||| | | | ||||||| ||| |||||||| |||||||| Sbjct 1630 ATCA--CGAATGAAACGCTCAGCTAGATTCTCATTAACTATTCCATCACTTGCAGCAAAG 1573 Query 123079 AATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCAGGGTCTTCCAGTCGTCA 123138 ||||| | | | ||||| | |||||||| | ||||| | ||||| | || Sbjct 1572 AATGCTAACACATGAGAGATGAAATGTTTTTCATTCTTATTCAACGAGTTCCAATGATCT 1513 Query 123139 AGATCTTTGGAC--AAATCAACTTCTTCCGCAGTCCAA 123174 ||||| ||| ||||| |||||||| | |||||| Sbjct 1512 AGATC--GCGACTTAAATCGACTTCTTCGACTGTCCAA 1477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627883941456000