Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq10223 143 3e-29 seq8921 113 5e-20 >seq10223 Length=44262 Score = 143 bits (158), Expect = 3e-29 Identities = 450/694 (65%), Gaps = 20/694 (3%) Strand=Plus/Minus Query 104915 GAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAG 104974 || || || ||||||| |||| | |||||||| ||||| ||| ||||||||| Sbjct 21005 GAAACCGGAACACCATTCATGGTCTACAAAGATCATTGTAATAGAAAATCTAATCAAAAA 20946 Query 104975 AATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAA 105034 ||| | || ||||| | || ||||| || || || || | |||| | || | Sbjct 20945 AATCTTGGCACCATCAAATGCTCTAATCTTTGCACCGAGATTGTTGAATATTCATCGCCA 20886 Query 105035 GATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAG 105094 || || | ||||| ||||| || || || | || | || || | ||| ||| | | Sbjct 20885 GACGAAATAGCTGTTTGTAATCTAGCTTCGGTTGCGTTACCAAAATTTGTCAATCAAAAA 20826 Query 105095 A-------CAAAGACATTTGATTAT-GAAAAACTCCA-CGAAGTTACGAAAACTGTCACC 105145 | | | || || || | ||||||| || | |||||| || | Sbjct 20825 AATCTATCCTACGATTTTGGAGAGTTGAAAAACATCATCAAAGTTATGA---------CG 20775 Query 105146 AAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCT 105205 ||||| | |||| | | |||||| ||||| ||| ||| | | |||||| || Sbjct 20774 AAAAATTTGAACAAAATAATTGATGTAAATTATTATCCCTTGCCGGAAGCTCGTCGTTCA 20715 Query 105206 AATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTT 105265 |||||| ||||| | || ||||| |||| || || ||||| || |||| |||||| | Sbjct 20714 AATATGCGACACAGACCGATTGGAATCGGCGTACAAGGTCTAGCTGATGCGTTCATTTTG 20655 Query 105266 TGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACC 105325 | | | | ||||| || |||||||| || | ||| | || || || || Sbjct 20654 CTTAGATATCCTTTTGAAAGTGATGAAGCGAAAAAATTGAATATACAAATTTTCGAAACA 20595 Query 105326 ATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAA 105385 || ||| ||| || | ||||| || | || || || | | |||| || |||||| Sbjct 20594 ATCTATTACGGAGCATTAGAGGCTAGCTGTGAATTAGCTGCTATCCATGGACCTTATGAA 20535 Query 105386 ACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAG 105445 |||| ||| || ||||| || || |||| | || |||| ||||||||||| | | Sbjct 20534 ACCTATGAAGGATCTCCCGCATCGAAAGGTATTCTCCAATACGATATGTGGGATCG-CAA 20476 Query 105446 ACCAAGC-TTCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCG 105504 ||| | | || || || |||||| | || ||| || | | ||||| || Sbjct 20475 ACCTACCGATCTCTGGGATTGGGAAAAATTGAAAGAAAATATTGCTAAATACGGTCTACG 20416 Query 105505 TAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAA 105564 || ||||| || | ||||| ||||| || || || || || |||||||| || || || Sbjct 20415 AAATAGTCTTCTAGTTGCTCCGATGCCGACCGCATCGACAGCTCAAATCTTAGGAAACAA 20356 Query 105565 TGAATGCTTTGAACCCTACACGACGAACATCTAT 105598 ||||| |||||||| ||||| | ||||| ||| Sbjct 20355 TGAATCATTTGAACCATACACTTCCAACATTTAT 20322 Score = 82.4 bits (90), Expect = 9e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 104155 TTATTTTGGTCTCAAAACCCT-TGAGAAGAGCTATCTTCAACGGCTCGATGGTGTCTTGA 104213 |||||||||| |||||||| | | | | |||||||| ||| | |||| | Sbjct 21768 TTATTTTGGTTTCAAAACCTTATTACGA-AGCTATCTATTACGAGTGAATGGGAAAGTTG 21710 Query 104214 TGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTG 104273 | |||| |||||| | ||||| ||| | || ||||||||||| ||| ||||| |||| Sbjct 21709 TCGAAAGACCACAGCATATGTTGATGAGAGTCGCCATCGGTATACATAAAGAAGATATTG 21650 Query 104274 ATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAA 104333 |||| | | | ||||| || | ||||| ||||| | || | ||||| |||| | Sbjct 21649 ATTCGGCCATCGAGACGTATAATCTAATGTCTAAAGGTCTTTTTACACACGCCTCACCTA 21590 Query 104334 CCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTC 104370 | | || ||| |||||||| | || |||||||| Sbjct 21589 CTTTGTTTAATTCTGGTACAACCCATCCTCAAATGTC 21553 >seq8921 Length=5376 Score = 113 bits (124), Expect = 5e-20 Identities = 259/385 (67%), Gaps = 4/385 (1%) Strand=Plus/Minus Query 7250 ACTTCGGAGATGTTTGGTAAAGTCCGAGAAACTCCACAAAACGAGGAGACACCCTTCTAC 7309 || || ||| ||| ||| || || || ||||| |||||| ||| ||| || || || Sbjct 3716 ACATCAGAGTTGTATGGCAAGGTGCGTGAAACGCCACAATCCGAAACGACTCCATTTTAT 3657 Query 7310 CCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGGCTCGTCAAAAATTACCGC 7369 ||||| || || || || || ||| | || | | | |||| ||||| || Sbjct 3656 CCACGATCTCCTTATGGCGTATCGAAGCTATTCGCCTACTCGATCGTTGTTAATTATCGA 3597 Query 7370 GAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATGAATCACCGAGACGA 7429 || |||||| |||| || | || || || ||||| ||||||||||||||| || Sbjct 3596 GAAGCTTACGATATGTTCGCTGTCAATGGGATTCTTTTCAATCATGAATCACCGAGAAGA 3537 Query 7430 GGTGCAGACTTTGTCACAAAGAAGATTAC-CGAGG-GTATCAAACAAATCATGAAGGGTG 7487 |||| | ||||| |||| || || || ||||| || | || || |||| | |||| Sbjct 3536 GGTGAAACGTTTGTGACAAGAAAAATCACTCGAGGTGTTGCGAA-AATTCATCTA-GGTG 3479 Query 7488 AAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGCGAGAGATTGGGGTCACGCGAAGG 7547 || || | ||||| | ||||| | | | | |||||||| ||||| || | Sbjct 3478 AATTAGAATATATTGAGCTTGGTAATCTTGATTCCAAACGGGATTGGGGCCACGCAAAAG 3419 Query 7548 ACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGCCGACGAATATGTAGTAG 7607 | || |||||||| |||||| | ||| | |||||||| || | || || | ||| | | Sbjct 3418 ATTACGTTGAAGCAATGTGGTTGATGATGCAACAAGATCAACCAGAAGATTTTGTCATTG 3359 Query 7608 CAACGGGTGAGACCCATACAGTGAG 7632 |||| ||||| | ||| |||| || Sbjct 3358 CAACCGGTGAAGCTCATTCAGTCAG 3334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583123296266400