Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq871 84.2 2e-11 >seq871 Length=12966 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| |||||||||||| ||||| || ||| || ||||||||||| Sbjct 5153 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCCCCTTGAAGTCGAGTACCGAATTGA 5094 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || || | ||| | || | |||||| || ||||| |||||||| || || | Sbjct 5093 CCTAAAGGTTGCAATAAATTGATATTGTTGCTCCCGACAAAATTTTGAGCTAAATTAATT 5034 Query 117425 ATCGT--ACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGC 117482 || || || || || | || ||||||||||| || | | || | ||| | | Sbjct 5033 ATGGTTGACATTAAAG--ACATTTCGCCATGGTGATAGGCGCTAAGTTCACCAACGGAAC 4976 Query 117483 CCGCCAGCTGAGCCACCTT 117501 | |||||||| || || || Sbjct 4975 CAGCCAGCTGTGCTACTTT 4957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547086993828000