Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq135 161 1e-34 seq718 152 6e-32 seq8921 143 3e-29 seq4581 113 5e-20 seq10223 91.5 2e-13 >seq135 Length=1279 Score = 161 bits (178), Expect = 1e-34 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || |||||||| || | || || ||||| |||||| | || || || | Sbjct 432 ATGCAGATTTTTGTCAAAACTTTGACTGGAAAGACCATTACTTTGGAAGTGGAACCTTCC 491 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| |||| | || ||||||||||| || || || || ||||||||||| ||| Sbjct 492 GATACCATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAG 551 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 || ||||| ||||||||||| || ||| | || |||| ||| || || ||| || ||||| Sbjct 552 CAACGTCTGATTTTTGCTGGCAAACAATTGGAAGATGGTCGAACTCTCAGC-GATTATAA 610 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||||| ||||| ||| | || | || |||||||| || ||||| Sbjct 611 TATCCAAAAAGAATCTACTTTGCACTTGGTGTTGCGTCTCCGTGGTGG 658 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || || || | || || || || || ||| | || ||||| | Sbjct 204 ATGCAGATTTTCGTGAAAACATTGACTGGAAAAACAATCACTTTGGAAGTTGAACCTTCC 263 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| | || |||||||| |||||||| || || ||||| ||||| || Sbjct 264 GATACTATTGAAAATGTCAAAGCTAAAATACAGGACAAAGAAGGTATTCCACCAGATCAA 323 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 || ||| | |||||||||||||| ||| | || |||| ||| || || ||| || ||||| Sbjct 324 CAACGTTTGATTTTTGCTGGTAAACAATTGGAAGATGGTCGAACTCTCAGC-GATTATAA 382 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||||| ||||||||| | || | || |||||||| || ||||| Sbjct 383 TATCCAAAAAGAATCCACTTTACACTTGGTGTTGCGTCTCCGGGGTGG 430 Score = 125 bits (138), Expect = 8e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || || || | || || || || |||||| | || ||||| | Sbjct 660 ATGCAGATTTTCGTTAAAACATTGACTGGAAAAACCATTACTTTGGAAGTTGAACCTTCC 719 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| |||| | || ||||||||||| || || || || ||||| ||||| || Sbjct 720 GATACCATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGATCAA 779 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 || ||| | ||||||||||| || ||| | || |||| | | || | ||| || || || Sbjct 780 CAACGTTTGATTTTTGCTGGCAAACAATTGGAAGATGGTAGAACATTGAGC-GATTACAA 838 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | ||||| ||||||||| | || | || |||||||| || ||||| Sbjct 839 TATTCAAAAAGAATCCACTTTACACTTGGTATTGCGTCTCCGTGGTGG 886 Score = 113 bits (124), Expect = 5e-20 Identities = 147/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 27433 GGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAA 27492 || || ||||| ||| | || || || | |||| |||| |||| | || |||||| Sbjct 3 GGAAAAACTATCACTTTGGAAGTGGAACCTTCCGATACGATTGAAAATGTCAAAGCTAAA 62 Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 ||||| ||||| || || ||||| ||||| || || ||| | ||||| |||||||| ||| Sbjct 63 ATTCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTTTGATTTTCGCTGGTAAACAA 122 Query 27553 CTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCT 27611 | || |||| | | || | ||| || || ||| |||| || ||||||||| | ||| | Sbjct 123 TTGGAAGATGGTAGAACATTGAGC-GATTACAATATCCAGAAAGAATCCACTTTGCATTT 181 Query 27612 AGTCTTGCGTCTTCGCGGTGG 27632 || ||||| || || ||||| Sbjct 182 GGTGTTGCGACTCCGTGGTGG 202 >seq718 Length=674 Score = 152 bits (168), Expect = 6e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || || || | || || || || |||||| | || |||||| | Sbjct 46 ATGCAGATTTTCGTGAAAACTTTGACTGGAAAAACCATTACTTTGGAAGTTGAGCCTTCC 105 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| | || ||||||||||| ||||| || || ||||||||||| || Sbjct 106 GATACGATTGAAAATGTCAAAGCTAAAATTCAAGACAAAGAAGGTATTCCTCCAGATCAA 165 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 || ||| | ||||| |||||||| ||| | || |||| ||| || || ||| || ||||| Sbjct 166 CAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGTCGAACTCTCAGC-GATTATAA 224 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||||| ||||||||| | ||| | || ||||| || || ||||| Sbjct 225 TATCCAAAAAGAATCCACTTTGCATTTGGTGTTGCGACTCCGTGGTGG 272 Score = 98.7 bits (108), Expect = 1e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || || || | || || || ||||| ||| | || |||||| | Sbjct 509 ATGCAAATTTTCGTGAAAACTTTGACTGGAAAAACTATCACTTTGGAAGTTGAGCCTTCC 568 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| | || ||||||||||| || || || || ||||| ||||| || Sbjct 569 GATACTATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGATCAA 628 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTAC 27569 || ||| | ||||| ||||| || ||| | || |||| ||| || Sbjct 629 CAACGTTTGATTTTCGCTGGCAAACAATTGGAAGATGGTCGAAC 672 >seq8921 Length=5376 Score = 143 bits (158), Expect = 3e-29 Identities = 285/416 (69%), Gaps = 11/416 (3%) Strand=Plus/Minus Query 24719 CAGATTTTATCAGGCGGGTACGAGTGAGATGTTTGGCAAGGTGCAGGAGACGCCACAGTC 24778 || ||| ||||| || |||| ||| ||| ||||||||||| || |||||||| || Sbjct 3735 CAAATTCTATCAAGCTAGTACATCAGAGTTGTATGGCAAGGTGCGTGAAACGCCACAATC 3676 Query 24779 GGAGACCACTCCATTTTATCCGCGAAGCCCGTATGGGGTCTCAAAGGTGTTCGCGTACTG 24838 || || |||||||||||||| ||| || ||||| || || ||| | ||||| |||| Sbjct 3675 CGAAACGACTCCATTTTATCCACGATCTCCTTATGGCGTATCGAAGCTATTCGCCTACTC 3616 Query 24839 GATAACCAAGAACTACCGTGAGGCCCATGGGATATATGCATGCAACGGAATTCTGTTCAA 24898 ||| || || || || || | | || | || ||| || ||||| ||||| Sbjct 3615 GATCGTTGTTAATTATCGAGAAGCTTACGATATGTTCGCTGTCAATGGGATTCTTTTCAA 3556 Query 24899 CCATGAGTCGGAGCGTCGGGGACCTGAA---TTTGTTACACGAAAGATTACTCTTGGTAT 24955 ||||| || | || | || |||| ||||| ||| |||| || |||| ||| | Sbjct 3555 TCATGAATC--ACCG-AGAAGAGGTGAAACGTTTGTGACAAGAAAAATCACTCGAGGTGT 3499 Query 24956 T--GACCATTGGATCAAG--ACAAGGGCACCTATTGAGCTGGGAAACCTAGATGCCAAAC 25011 | || ||| ||| || | | | ||||||||| || || || ||| |||||| Sbjct 3498 TGCGAAAATT-CATCTAGGTGAATTAGAATATATTGAGCTTGGTAATCTTGATTCCAAAC 3440 Query 25012 GTGATTGGGGGCATGCAGCCGACTACGTCGACGCCATGTGGCGCATGCTCCAACAGAATA 25071 | |||||||| || ||| || ||||| || || |||||| ||| | ||||| || Sbjct 3439 GGGATTGGGGCCACGCAAAAGATTACGTTGAAGCAATGTGGTTGATGATGCAACAAGATC 3380 Query 25072 AGCCAGAGGATTTTGTGATCGGCACCGGTCAGACGCATTCTATCAGGGATTTTATT 25127 | ||||| |||||||| || | |||||| | | ||||| |||| || ||| || Sbjct 3379 AACCAGAAGATTTTGTCATTGCAACCGGTGAAGCTCATTCAGTCAGAGAATTTGTT 3324 >seq4581 Length=275 Score = 113 bits (124), Expect = 5e-20 Identities = 120/156 (77%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| | || |||||||| || || || || || ||||||||||| ||||| ||||||||| Sbjct 275 AATGTCAAAGCTAAAATCCAAGATAAAGAAGGTATTCCTCCAGATCAGCAACGTCTAATT 216 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGA 27596 |||||||| || ||| | || |||| | | || | ||| || ||||| | || || || Sbjct 215 TTTGCTGGCAAACAATTGGAAGATGGTAGAACATTGAGC-GATTATAACATTCAGAAAGA 157 Query 27597 ATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||| ||| | ||| | || ||||||||||| ||||| Sbjct 156 ATCAACTTTGCATTTGGTATTGCGTCTTCGTGGTGG 121 >seq10223 Length=44262 Score = 91.5 bits (100), Expect = 2e-13 Identities = 286/438 (65%), Gaps = 9/438 (2%) Strand=Plus/Plus Query 81318 AAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG--- 81374 |||||| | || || |||||||| || |||| ||| | |||| | || || Sbjct 21267 AAAGTCGAAAATATCTGCATGCCACGGTTCCAAATATATTGCGAAAGCACCAGGACGCTT 21326 Query 81375 ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGAT 81434 | ||||| || | ||| ||||| || || |||| | || |||||||| || | | Sbjct 21327 ATTACCACCTTGATCGACATAACGAGCGGTATCGTTGTAAACTCGCAACATCGGAACCAA 21386 Query 81435 ACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCA--CCTTGCTG 81492 ||||| ||| ||||| || || || || || ||| || || || || | | || Sbjct 21387 ACCATTTGAATGACCTTTGGTGCCAACTATGTACGATCCATTTGCTCGAATACAATGAAC 21446 Query 81493 ATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCA 81552 ||| ||||||||||||||| | |||| || || |||||| | |||| || || Sbjct 21447 ATT--AAGACCGATGCCACCGGCTGACTTCGATATAATAGCACATTGTTTCAACGTATCG 21504 Query 81553 TAAATTCCCTCGATGCTATCTTTTTTCAT-GTCAAGCAAGAAACAGCTTGACATCTGAGG 81611 ||||| || || || ||||| | ||| ||||| || ||||| ||||| ||||| Sbjct 21505 TAAATACCTTCAATACTATCATCGGCCATCGTCAA-TAAAAAACATGAAGACATTTGAGG 21563 Query 81612 GCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACAT 81671 ||| || | ||| |||| || || | ||||| | ||| || || ||||| Sbjct 21564 ATGGGTTGTACCAGAATTAAACAAAGTAGGTGAGGCGTGTGTAAAAAGACCTTTAGACAT 21623 Query 81672 CAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACG 81731 || | ||| || || || | |||||| || || |||||||| || || | Sbjct 21624 TAGATTATACGTCTCGATGGCCGAATCAATATCTTCTTTATGTATACCGATGGCGACTCT 21683 Query 81732 CATAAACATGTACTGGGG 81749 ||| ||||| | ||| || Sbjct 21684 CATCAACATATGCTGTGG 21701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570175949323200