Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10]
18,860 sequences; 56,262,437 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq135 161 1e-34
seq718 152 6e-32
seq8921 143 3e-29
seq4581 113 5e-20
seq10223 91.5 2e-13
>seq135
Length=1279
Score = 161 bits (178), Expect = 1e-34
Identities = 174/228 (76%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || |||||||| || | || || ||||| |||||| | || || || |
Sbjct 432 ATGCAGATTTTTGTCAAAACTTTGACTGGAAAGACCATTACTTTGGAAGTGGAACCTTCC 491
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||||| |||| | || ||||||||||| || || || || ||||||||||| |||
Sbjct 492 GATACCATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAG 551
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
|| ||||| ||||||||||| || ||| | || |||| ||| || || ||| || |||||
Sbjct 552 CAACGTCTGATTTTTGCTGGCAAACAATTGGAAGATGGTCGAACTCTCAGC-GATTATAA 610
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| ||||||| ||||| ||| | || | || |||||||| || |||||
Sbjct 611 TATCCAAAAAGAATCTACTTTGCACTTGGTGTTGCGTCTCCGTGGTGG 658
Score = 143 bits (158), Expect = 3e-29
Identities = 170/228 (75%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || || || || | || || || || || ||| | || ||||| |
Sbjct 204 ATGCAGATTTTCGTGAAAACATTGACTGGAAAAACAATCACTTTGGAAGTTGAACCTTCC 263
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| |||| |||| | || |||||||| |||||||| || || ||||| ||||| ||
Sbjct 264 GATACTATTGAAAATGTCAAAGCTAAAATACAGGACAAAGAAGGTATTCCACCAGATCAA 323
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
|| ||| | |||||||||||||| ||| | || |||| ||| || || ||| || |||||
Sbjct 324 CAACGTTTGATTTTTGCTGGTAAACAATTGGAAGATGGTCGAACTCTCAGC-GATTATAA 382
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| ||||||| ||||||||| | || | || |||||||| || |||||
Sbjct 383 TATCCAAAAAGAATCCACTTTACACTTGGTGTTGCGTCTCCGGGGTGG 430
Score = 125 bits (138), Expect = 8e-24
Identities = 166/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || || || || | || || || || |||||| | || ||||| |
Sbjct 660 ATGCAGATTTTCGTTAAAACATTGACTGGAAAAACCATTACTTTGGAAGTTGAACCTTCC 719
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||||| |||| | || ||||||||||| || || || || ||||| ||||| ||
Sbjct 720 GATACCATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGATCAA 779
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
|| ||| | ||||||||||| || ||| | || |||| | | || | ||| || || ||
Sbjct 780 CAACGTTTGATTTTTGCTGGCAAACAATTGGAAGATGGTAGAACATTGAGC-GATTACAA 838
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| | ||||| ||||||||| | || | || |||||||| || |||||
Sbjct 839 TATTCAAAAAGAATCCACTTTACACTTGGTATTGCGTCTCCGTGGTGG 886
Score = 113 bits (124), Expect = 5e-20
Identities = 147/201 (73%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 27433 GGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAA 27492
|| || ||||| ||| | || || || | |||| |||| |||| | || ||||||
Sbjct 3 GGAAAAACTATCACTTTGGAAGTGGAACCTTCCGATACGATTGAAAATGTCAAAGCTAAA 62
Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552
||||| ||||| || || ||||| ||||| || || ||| | ||||| |||||||| |||
Sbjct 63 ATTCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTTTGATTTTCGCTGGTAAACAA 122
Query 27553 CTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCT 27611
| || |||| | | || | ||| || || ||| |||| || ||||||||| | ||| |
Sbjct 123 TTGGAAGATGGTAGAACATTGAGC-GATTACAATATCCAGAAAGAATCCACTTTGCATTT 181
Query 27612 AGTCTTGCGTCTTCGCGGTGG 27632
|| ||||| || || |||||
Sbjct 182 GGTGTTGCGACTCCGTGGTGG 202
>seq718
Length=674
Score = 152 bits (168), Expect = 6e-32
Identities = 172/228 (75%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || || || || | || || || || |||||| | || |||||| |
Sbjct 46 ATGCAGATTTTCGTGAAAACTTTGACTGGAAAAACCATTACTTTGGAAGTTGAGCCTTCC 105
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| |||| |||| | || ||||||||||| ||||| || || ||||||||||| ||
Sbjct 106 GATACGATTGAAAATGTCAAAGCTAAAATTCAAGACAAAGAAGGTATTCCTCCAGATCAA 165
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
|| ||| | ||||| |||||||| ||| | || |||| ||| || || ||| || |||||
Sbjct 166 CAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGTCGAACTCTCAGC-GATTATAA 224
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| ||||||| ||||||||| | ||| | || ||||| || || |||||
Sbjct 225 TATCCAAAAAGAATCCACTTTGCATTTGGTGTTGCGACTCCGTGGTGG 272
Score = 98.7 bits (108), Expect = 1e-15
Identities = 120/164 (73%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| || || || || | || || || ||||| ||| | || |||||| |
Sbjct 509 ATGCAAATTTTCGTGAAAACTTTGACTGGAAAAACTATCACTTTGGAAGTTGAGCCTTCC 568
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| |||| |||| | || ||||||||||| || || || || ||||| ||||| ||
Sbjct 569 GATACTATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGATCAA 628
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTAC 27569
|| ||| | ||||| ||||| || ||| | || |||| ||| ||
Sbjct 629 CAACGTTTGATTTTCGCTGGCAAACAATTGGAAGATGGTCGAAC 672
>seq8921
Length=5376
Score = 143 bits (158), Expect = 3e-29
Identities = 285/416 (69%), Gaps = 11/416 (3%)
Strand=Plus/Minus
Query 24719 CAGATTTTATCAGGCGGGTACGAGTGAGATGTTTGGCAAGGTGCAGGAGACGCCACAGTC 24778
|| ||| ||||| || |||| ||| ||| ||||||||||| || |||||||| ||
Sbjct 3735 CAAATTCTATCAAGCTAGTACATCAGAGTTGTATGGCAAGGTGCGTGAAACGCCACAATC 3676
Query 24779 GGAGACCACTCCATTTTATCCGCGAAGCCCGTATGGGGTCTCAAAGGTGTTCGCGTACTG 24838
|| || |||||||||||||| ||| || ||||| || || ||| | ||||| ||||
Sbjct 3675 CGAAACGACTCCATTTTATCCACGATCTCCTTATGGCGTATCGAAGCTATTCGCCTACTC 3616
Query 24839 GATAACCAAGAACTACCGTGAGGCCCATGGGATATATGCATGCAACGGAATTCTGTTCAA 24898
||| || || || || || | | || | || ||| || ||||| |||||
Sbjct 3615 GATCGTTGTTAATTATCGAGAAGCTTACGATATGTTCGCTGTCAATGGGATTCTTTTCAA 3556
Query 24899 CCATGAGTCGGAGCGTCGGGGACCTGAA---TTTGTTACACGAAAGATTACTCTTGGTAT 24955
||||| || | || | || |||| ||||| ||| |||| || |||| ||| |
Sbjct 3555 TCATGAATC--ACCG-AGAAGAGGTGAAACGTTTGTGACAAGAAAAATCACTCGAGGTGT 3499
Query 24956 T--GACCATTGGATCAAG--ACAAGGGCACCTATTGAGCTGGGAAACCTAGATGCCAAAC 25011
| || ||| ||| || | | | ||||||||| || || || ||| ||||||
Sbjct 3498 TGCGAAAATT-CATCTAGGTGAATTAGAATATATTGAGCTTGGTAATCTTGATTCCAAAC 3440
Query 25012 GTGATTGGGGGCATGCAGCCGACTACGTCGACGCCATGTGGCGCATGCTCCAACAGAATA 25071
| |||||||| || ||| || ||||| || || |||||| ||| | ||||| ||
Sbjct 3439 GGGATTGGGGCCACGCAAAAGATTACGTTGAAGCAATGTGGTTGATGATGCAACAAGATC 3380
Query 25072 AGCCAGAGGATTTTGTGATCGGCACCGGTCAGACGCATTCTATCAGGGATTTTATT 25127
| ||||| |||||||| || | |||||| | | ||||| |||| || ||| ||
Sbjct 3379 AACCAGAAGATTTTGTCATTGCAACCGGTGAAGCTCATTCAGTCAGAGAATTTGTT 3324
>seq4581
Length=275
Score = 113 bits (124), Expect = 5e-20
Identities = 120/156 (77%), Gaps = 2/156 (1%)
Strand=Plus/Minus
Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537
||| | || |||||||| || || || || || ||||||||||| ||||| |||||||||
Sbjct 275 AATGTCAAAGCTAAAATCCAAGATAAAGAAGGTATTCCTCCAGATCAGCAACGTCTAATT 216
Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGA 27596
|||||||| || ||| | || |||| | | || | ||| || ||||| | || || ||
Sbjct 215 TTTGCTGGCAAACAATTGGAAGATGGTAGAACATTGAGC-GATTATAACATTCAGAAAGA 157
Query 27597 ATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
||| ||| | ||| | || ||||||||||| |||||
Sbjct 156 ATCAACTTTGCATTTGGTATTGCGTCTTCGTGGTGG 121
>seq10223
Length=44262
Score = 91.5 bits (100), Expect = 2e-13
Identities = 286/438 (65%), Gaps = 9/438 (2%)
Strand=Plus/Plus
Query 81318 AAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG--- 81374
|||||| | || || |||||||| || |||| ||| | |||| | || ||
Sbjct 21267 AAAGTCGAAAATATCTGCATGCCACGGTTCCAAATATATTGCGAAAGCACCAGGACGCTT 21326
Query 81375 ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGAT 81434
| ||||| || | ||| ||||| || || |||| | || |||||||| || | |
Sbjct 21327 ATTACCACCTTGATCGACATAACGAGCGGTATCGTTGTAAACTCGCAACATCGGAACCAA 21386
Query 81435 ACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCA--CCTTGCTG 81492
||||| ||| ||||| || || || || || ||| || || || || | | ||
Sbjct 21387 ACCATTTGAATGACCTTTGGTGCCAACTATGTACGATCCATTTGCTCGAATACAATGAAC 21446
Query 81493 ATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCA 81552
||| ||||||||||||||| | |||| || || |||||| | |||| || ||
Sbjct 21447 ATT--AAGACCGATGCCACCGGCTGACTTCGATATAATAGCACATTGTTTCAACGTATCG 21504
Query 81553 TAAATTCCCTCGATGCTATCTTTTTTCAT-GTCAAGCAAGAAACAGCTTGACATCTGAGG 81611
||||| || || || ||||| | ||| ||||| || ||||| ||||| |||||
Sbjct 21505 TAAATACCTTCAATACTATCATCGGCCATCGTCAA-TAAAAAACATGAAGACATTTGAGG 21563
Query 81612 GCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACAT 81671
||| || | ||| |||| || || | ||||| | ||| || || |||||
Sbjct 21564 ATGGGTTGTACCAGAATTAAACAAAGTAGGTGAGGCGTGTGTAAAAAGACCTTTAGACAT 21623
Query 81672 CAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACG 81731
|| | ||| || || || | |||||| || || |||||||| || || |
Sbjct 21624 TAGATTATACGTCTCGATGGCCGAATCAATATCTTCTTTATGTATACCGATGGCGACTCT 21683
Query 81732 CATAAACATGTACTGGGG 81749
||| ||||| | ||| ||
Sbjct 21684 CATCAACATATGCTGTGG 21701
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570175949323200
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