Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq718 113 3e-20 seq135 107 1e-18 >seq718 Length=674 Score = 113 bits (124), Expect = 3e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || |||||||||||||| | |||| || ||||| || |||||||| || ||||| Sbjct 263 AGTCGCAACACCAAATGCAAAGTGGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGA 204 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | ||||||||| || || || ||||| ||||| || || || | || || Sbjct 203 CCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCT 144 Query 34609 TTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| ||| | ||| || | ||| || || ||| ||||||| || Sbjct 143 TTGTCT-TGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGCTCAACTTCCAAAGT 85 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||| || || || |||||||| ||||||||||| Sbjct 84 AATGGTTTTTCCAGTCAAAGTTTTCACGAAAATCTGCAT 46 Score = 91.5 bits (100), Expect = 9e-14 Identities = 160/227 (70%), Gaps = 11/227 (5%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC--TGAAAGT---- 34542 |||||||||||||| || | ||| || ||||| || |||||||| ||| ||| Sbjct 498 AGACGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTGAGAGTTCNG 439 Query 34543 -GTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCAC 34601 ||||| | ||||| | |||||| || || || || ||||| ||||| || || || | Sbjct 438 AGTTCGACCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAAT 379 Query 34602 TCCCTCCTTGTC-TGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACT 34659 || || ||||| ||| || ||| | ||| || | |||||| || || ||| Sbjct 378 ACCTTCTTTGTCCTGT-AT-TTTAGCTTTGACATTTTCAATTGTATCGGAAGGTTCAACT 321 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || ||||| || || || ||||| || ||||||||||| Sbjct 320 TCCAAAGTGATTGTTTTTCCAGTCAAAGTTTTAACGAAAATCTGCAT 274 >seq135 Length=1279 Score = 107 bits (118), Expect = 1e-18 Identities = 159/220 (72%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||||||||| || | |||| || ||||| || |||||||| || ||||| Sbjct 421 AGACGCAACACCAAGTGTAAAGTGGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGA 362 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | ||||||||| ||||| || ||||| ||||| || || || | || || Sbjct 361 CCATCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCT 302 Query 34609 TTGT-CTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGG 34666 |||| |||| || ||| | ||| || | ||| || || || ||||||| | Sbjct 301 TTGTCCTGT-AT-TTTAGCTTTGACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAG 244 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || ||||| || || || |||||||| ||||||||||| Sbjct 243 TGATTGTTTTTCCAGTCAATGTTTTCACGAAAATCTGCAT 204 Score = 93.3 bits (102), Expect = 3e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| ||||| || | |||| || |||||||| || ||||| | ||||| Sbjct 877 AGACGCAATACCAAGTGTAAAGTGGATTCTTTTTGAATATTGTAATCGCTCAATGTTCTA 818 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | |||||| || ||||| || ||||| ||||| || || || | || || Sbjct 817 CCATCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCT 758 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || ||| ||| ||| | ||| || | ||| || || || ||||||| || Sbjct 757 TTATCT-TGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCAACTTCCAAAGT 699 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || ||||| || || || ||||| || |||||||||||| Sbjct 698 AATGGTTTTTCCAGTCAATGTTTTAACGAAAATCTGCATG 659 Score = 91.5 bits (100), Expect = 9e-14 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||||||||| || | ||| || ||||| || |||||||| || ||||| Sbjct 649 AGACGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGA 590 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | |||||| || ||||| || | ||| || || || || || | || || Sbjct 589 CCATCTTCCAATTGTTTGCCAGCAAAAATCAGACGTTGCTGATCTGGAGGAATACCTTCT 530 Query 34609 TTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || ||| ||| ||| | ||| || | ||| || || |||||||||| || Sbjct 529 TTATCT-TGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCCACTTCCAAAGT 471 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || || ||||| |||||||||||||| Sbjct 470 AATGGTCTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314657257434380