Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10]
18,860 sequences; 56,262,437 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq135 174 1e-38
seq718 165 7e-36
seq4581 109 5e-19
seq620 95.1 1e-14
>seq135
Length=1279
Score = 174 bits (192), Expect = 1e-38
Identities = 177/231 (77%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| || || ||||| |||| || || | |||||| | ||||| ||||| ||
Sbjct 659 CATGCAGATTTTCGTTAAAACATTGACTGGAAAAACCATTACTTTGGAAGTTGAACCTTC 718
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||| | ||||| | |||||| ||||||||||| |||||||| || ||||| |||||
Sbjct 719 CGATACCATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGATCA 778
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
||| ||||| || | || ||||||||||||||||| || || | |||||||||
Sbjct 779 ACAACGTTTGATTTTTGCTGGCAAACAATTGGAAGATGGTAGAACATTGAGCGATTACAA 838
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|||||||| || || || ||||| ||||| |||||| | || ||||| ||
Sbjct 839 TATTCAAAAAGAATCCACTTTACACTTGGTATTGCGTCTCCGTGGTGGTAT 889
Score = 170 bits (188), Expect = 2e-37
Identities = 179/232 (77%), Gaps = 4/232 (2%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| |||||| |||| || ||| | |||||| | ||||||||||| |||
Sbjct 432 ATGCAGATTTTTGTCAAAACTTTGACTGGAAAGACCATTACTTTGGAAGTGGAACCTTCC 491
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||| | |||||| ||||||||||| |||||||| || || || |||||
Sbjct 492 GATACCATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAG 551
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTC--CGATTACA 27165
|| ||| | || | || ||||||||||||||||| | |||| | | || |||||| |
Sbjct 552 CAACGTCTGATTTTTGCTGGCAAACAATTGGAAGA-TGGTCGAAC-TCTCAGCGATTATA 609
Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
| || ||||| || || || || || ||||| |||||| | || ||||||||
Sbjct 610 ATATCCAAAAAGAATCTACTTTGCACTTGGTGTTGCGTCTCCGTGGTGGCAT 661
Score = 156 bits (172), Expect = 4e-33
Identities = 176/232 (76%), Gaps = 4/232 (2%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || ||||| |||| || || | || ||| | ||||| ||||| |||
Sbjct 204 ATGCAGATTTTCGTGAAAACATTGACTGGAAAAACAATCACTTTGGAAGTTGAACCTTCC 263
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||| | |||||| ||||| || ||||||||||| || ||||| ||||||
Sbjct 264 GATACTATTGAAAATGTCAAAGCTAAAATACAGGACAAAGAAGGTATTCCACCAGATCAA 323
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTC--CGATTACA 27165
|| ||||| || | || || |||||||||||||| | |||| | | || |||||| |
Sbjct 324 CAACGTTTGATTTTTGCTGGTAAACAATTGGAAGA-TGGTCGAAC-TCTCAGCGATTATA 381
Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
| || ||||| || || || ||||| ||||| |||||| | |||||||| ||
Sbjct 382 ATATCCAAAAAGAATCCACTTTACACTTGGTGTTGCGTCTCCGGGGTGGTAT 433
Score = 150 bits (166), Expect = 2e-31
Identities = 151/196 (77%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 27022 CTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAG 27081
|||| ||| | ||||||||||| ||||| ||||||| | |||||| ||||||||||
Sbjct 10 CTATCACTTTGGAAGTGGAACCTTCCGATACGATTGAAAATGTCAAAGCTAAAATTCAAG 69
Query 27082 ACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAG 27141
|||||||||| || ||||| |||||||| ||||| || | ||| || |||||||||||||
Sbjct 70 ACAAAGAAGGTATTCCACCAGATCAACAACGTTTGATTTTCGCTGGTAAACAATTGGAAG 129
Query 27142 ACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGC 27201
| || || | ||||||||| || || || || || || || |||||||| ||||
Sbjct 130 ATGGTAGAACATTGAGCGATTACAATATCCAGAAAGAATCCACTTTGCATTTGGTGTTGC 189
Query 27202 GTTTGCGGGGTGGCAT 27217
| | || ||||| ||
Sbjct 190 GACTCCGTGGTGGTAT 205
Score = 84.2 bits (92), Expect = 2e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| |||||| |||| || || |||||||| | ||||| || || |||
Sbjct 888 ATGCAGATTTTTGTCAAAACTTTGACTGGAAAAACTATTACTTTGGAAGTTGAGCCTTCC 947
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGG 27091
|| | ||||| | |||||| ||||| || |||||||||||
Sbjct 948 GATACAATTGAAAATGTCAAAGCTAAAATACAGGACAAAGAAGG 991
>seq718
Length=674
Score = 165 bits (182), Expect = 7e-36
Identities = 178/232 (77%), Gaps = 4/232 (2%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || |||||| |||| || || | |||||| | ||||| || || |||
Sbjct 46 ATGCAGATTTTCGTGAAAACTTTGACTGGAAAAACCATTACTTTGGAAGTTGAGCCTTCC 105
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| ||||||| | |||||| |||||||||||||||||||| || || || ||||||
Sbjct 106 GATACGATTGAAAATGTCAAAGCTAAAATTCAAGACAAAGAAGGTATTCCTCCAGATCAA 165
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTC--CGATTACA 27165
|| ||||| || | ||| || |||||||||||||| | |||| | | || |||||| |
Sbjct 166 CAACGTTTGATTTTCGCTGGTAAACAATTGGAAGA-TGGTCGAAC-TCTCAGCGATTATA 223
Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
| || ||||| || || || || |||||||| ||||| | || ||||| ||
Sbjct 224 ATATCCAAAAAGAATCCACTTTGCATTTGGTGTTGCGACTCCGTGGTGGTAT 275
Score = 150 bits (166), Expect = 2e-31
Identities = 178/238 (75%), Gaps = 9/238 (4%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || |||||| |||| || || | || ||| | ||||| ||||| |||
Sbjct 274 ATGCAGATTTTCGTTAAAACTTTGACTGGAAAAACAATCACTTTGGAAGTTGAACCTTCC 333
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||| | |||||| ||||| || ||||||||||| || ||||| ||||||
Sbjct 334 GATACAATTGAAAATGTCAAAGCTAAAATACAGGACAAAGAAGGTATTCCACCAGATCAA 393
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGA---CCG---TTTC--CG 27159
|| ||||| || | ||| ||||||||||||||||| | |||| | | | || ||
Sbjct 394 CAACGTTTGATTTTCGCTGGCAAACAATTGGAAGA-TGGTCGAACTCNGAACTCTCAGCG 452
Query 27160 ATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|||| || || ||||| || || || || || ||||| |||||| | || ||||| ||
Sbjct 453 ATTATAATATCCAAAAAGAATCTACTTTGCACTTGGTGTTGCGTCTCCGTGGTGGTAT 510
Score = 131 bits (144), Expect = 1e-25
Identities = 122/155 (79%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || || || |||||| |||| || || |||| ||| | ||||| || || |||
Sbjct 509 ATGCAAATTTTCGTGAAAACTTTGACTGGAAAAACTATCACTTTGGAAGTTGAGCCTTCC 568
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||| | |||||| ||||||||||| |||||||| || ||||| ||||||
Sbjct 569 GATACTATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGATCAA 628
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGA 27142
|| ||||| || | ||| |||||||||||||||||
Sbjct 629 CAACGTTTGATTTTCGCTGGCAAACAATTGGAAGA 663
>seq4581
Length=275
Score = 109 bits (120), Expect = 5e-19
Identities = 117/155 (75%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 27063 GTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATAC 27122
|||||| ||||| ||||| |||||||| || || || ||||| || ||| |||| |
Sbjct 272 GTCAAAGCTAAAATCCAAGATAAAGAAGGTATTCCTCCAGATCAGCAACGTCTAATTTTT 213
Query 27123 GCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCG 27182
|| ||||||||||||||||| || || | |||||| |||||||| || || ||
Sbjct 212 GCTGGCAAACAATTGGAAGATGGTAGAACATTGAGCGATTATAACATTCAGAAAGAATCA 153
Query 27183 ACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| || |||||||| |||||| | || ||||| ||
Sbjct 152 ACTTTGCATTTGGTATTGCGTCTTCGTGGTGGTAT 118
Score = 89.7 bits (98), Expect = 4e-13
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| |||||| |||| || ||| | ||||| | ||||| ||||| |||
Sbjct 119 ATGCAGATTTTTGTCAAAACTTTGACTGGAAAGACCATTACCTTGGAAGTTGAACCTTCC 60
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGG 27091
|| ||||||| | |||||| ||||| || |||||||||||
Sbjct 59 GATACGATTGAAAACGTCAAAGCTAAAATACAGGACAAAGAAGG 16
>seq620
Length=8710
Score = 95.1 bits (104), Expect = 1e-14
Identities = 85/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| |||||| |||| || || |||| ||| | ||||||||||| |||
Sbjct 8602 ATGCAGATTTTTGTCAAAACTTTGACTGGAAAAACTATCACTTTGGAAGTGGAACCTTCC 8661
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCAT 27094
|| | ||||| | |||||| ||||||||||| |||||||| ||
Sbjct 8662 GATACCATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTAT 8708
Score = 89.7 bits (98), Expect = 4e-13
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || ||||| |||||| |||| || || |||| ||| | ||||||||||| |||
Sbjct 8286 ATGCAAATTTTTGTTAAAACTTTGACTGGAAAAACTATCACTTTGGAAGTGGAACCTTCC 8345
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGG 27091
|| | ||||| | |||||| || |||||||||||||||||
Sbjct 8346 GATACAATTGAAAACGTCAAAGCTAAGATTCAAGACAAAGAAGG 8389
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434815867987200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |