Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq135 174 1e-38 seq718 165 7e-36 seq4581 109 5e-19 seq620 95.1 1e-14 >seq135 Length=1279 Score = 174 bits (192), Expect = 1e-38 Identities = 177/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || ||||| |||| || || | |||||| | ||||| ||||| || Sbjct 659 CATGCAGATTTTCGTTAAAACATTGACTGGAAAAACCATTACTTTGGAAGTTGAACCTTC 718 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | |||||| ||||||||||| |||||||| || ||||| ||||| Sbjct 719 CGATACCATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGATCA 778 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| ||||| || | || ||||||||||||||||| || || | ||||||||| Sbjct 779 ACAACGTTTGATTTTTGCTGGCAAACAATTGGAAGATGGTAGAACATTGAGCGATTACAA 838 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || || ||||| ||||| |||||| | || ||||| || Sbjct 839 TATTCAAAAAGAATCCACTTTACACTTGGTATTGCGTCTCCGTGGTGGTAT 889 Score = 170 bits (188), Expect = 2e-37 Identities = 179/232 (77%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| |||||| |||| || ||| | |||||| | ||||||||||| ||| Sbjct 432 ATGCAGATTTTTGTCAAAACTTTGACTGGAAAGACCATTACTTTGGAAGTGGAACCTTCC 491 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | |||||| ||||||||||| |||||||| || || || ||||| Sbjct 492 GATACCATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAG 551 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTC--CGATTACA 27165 || ||| | || | || ||||||||||||||||| | |||| | | || |||||| | Sbjct 552 CAACGTCTGATTTTTGCTGGCAAACAATTGGAAGA-TGGTCGAAC-TCTCAGCGATTATA 609 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 | || ||||| || || || || || ||||| |||||| | || |||||||| Sbjct 610 ATATCCAAAAAGAATCTACTTTGCACTTGGTGTTGCGTCTCCGTGGTGGCAT 661 Score = 156 bits (172), Expect = 4e-33 Identities = 176/232 (76%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| |||| || || | || ||| | ||||| ||||| ||| Sbjct 204 ATGCAGATTTTCGTGAAAACATTGACTGGAAAAACAATCACTTTGGAAGTTGAACCTTCC 263 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | |||||| ||||| || ||||||||||| || ||||| |||||| Sbjct 264 GATACTATTGAAAATGTCAAAGCTAAAATACAGGACAAAGAAGGTATTCCACCAGATCAA 323 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTC--CGATTACA 27165 || ||||| || | || || |||||||||||||| | |||| | | || |||||| | Sbjct 324 CAACGTTTGATTTTTGCTGGTAAACAATTGGAAGA-TGGTCGAAC-TCTCAGCGATTATA 381 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 | || ||||| || || || ||||| ||||| |||||| | |||||||| || Sbjct 382 ATATCCAAAAAGAATCCACTTTACACTTGGTGTTGCGTCTCCGGGGTGGTAT 433 Score = 150 bits (166), Expect = 2e-31 Identities = 151/196 (77%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 27022 CTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAG 27081 |||| ||| | ||||||||||| ||||| ||||||| | |||||| |||||||||| Sbjct 10 CTATCACTTTGGAAGTGGAACCTTCCGATACGATTGAAAATGTCAAAGCTAAAATTCAAG 69 Query 27082 ACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAG 27141 |||||||||| || ||||| |||||||| ||||| || | ||| || ||||||||||||| Sbjct 70 ACAAAGAAGGTATTCCACCAGATCAACAACGTTTGATTTTCGCTGGTAAACAATTGGAAG 129 Query 27142 ACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGC 27201 | || || | ||||||||| || || || || || || || |||||||| |||| Sbjct 130 ATGGTAGAACATTGAGCGATTACAATATCCAGAAAGAATCCACTTTGCATTTGGTGTTGC 189 Query 27202 GTTTGCGGGGTGGCAT 27217 | | || ||||| || Sbjct 190 GACTCCGTGGTGGTAT 205 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| |||||| |||| || || |||||||| | ||||| || || ||| Sbjct 888 ATGCAGATTTTTGTCAAAACTTTGACTGGAAAAACTATTACTTTGGAAGTTGAGCCTTCC 947 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGG 27091 || | ||||| | |||||| ||||| || ||||||||||| Sbjct 948 GATACAATTGAAAATGTCAAAGCTAAAATACAGGACAAAGAAGG 991 >seq718 Length=674 Score = 165 bits (182), Expect = 7e-36 Identities = 178/232 (77%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || |||||| |||| || || | |||||| | ||||| || || ||| Sbjct 46 ATGCAGATTTTCGTGAAAACTTTGACTGGAAAAACCATTACTTTGGAAGTTGAGCCTTCC 105 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || ||||||| | |||||| |||||||||||||||||||| || || || |||||| Sbjct 106 GATACGATTGAAAATGTCAAAGCTAAAATTCAAGACAAAGAAGGTATTCCTCCAGATCAA 165 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTC--CGATTACA 27165 || ||||| || | ||| || |||||||||||||| | |||| | | || |||||| | Sbjct 166 CAACGTTTGATTTTCGCTGGTAAACAATTGGAAGA-TGGTCGAAC-TCTCAGCGATTATA 223 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 | || ||||| || || || || |||||||| ||||| | || ||||| || Sbjct 224 ATATCCAAAAAGAATCCACTTTGCATTTGGTGTTGCGACTCCGTGGTGGTAT 275 Score = 150 bits (166), Expect = 2e-31 Identities = 178/238 (75%), Gaps = 9/238 (4%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || |||||| |||| || || | || ||| | ||||| ||||| ||| Sbjct 274 ATGCAGATTTTCGTTAAAACTTTGACTGGAAAAACAATCACTTTGGAAGTTGAACCTTCC 333 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | |||||| ||||| || ||||||||||| || ||||| |||||| Sbjct 334 GATACAATTGAAAATGTCAAAGCTAAAATACAGGACAAAGAAGGTATTCCACCAGATCAA 393 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGA---CCG---TTTC--CG 27159 || ||||| || | ||| ||||||||||||||||| | |||| | | | || || Sbjct 394 CAACGTTTGATTTTCGCTGGCAAACAATTGGAAGA-TGGTCGAACTCNGAACTCTCAGCG 452 Query 27160 ATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| || || ||||| || || || || || ||||| |||||| | || ||||| || Sbjct 453 ATTATAATATCCAAAAAGAATCTACTTTGCACTTGGTGTTGCGTCTCCGTGGTGGTAT 510 Score = 131 bits (144), Expect = 1e-25 Identities = 122/155 (79%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || |||||| |||| || || |||| ||| | ||||| || || ||| Sbjct 509 ATGCAAATTTTCGTGAAAACTTTGACTGGAAAAACTATCACTTTGGAAGTTGAGCCTTCC 568 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | |||||| ||||||||||| |||||||| || ||||| |||||| Sbjct 569 GATACTATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGATCAA 628 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGA 27142 || ||||| || | ||| ||||||||||||||||| Sbjct 629 CAACGTTTGATTTTCGCTGGCAAACAATTGGAAGA 663 >seq4581 Length=275 Score = 109 bits (120), Expect = 5e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 27063 GTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATAC 27122 |||||| ||||| ||||| |||||||| || || || ||||| || ||| |||| | Sbjct 272 GTCAAAGCTAAAATCCAAGATAAAGAAGGTATTCCTCCAGATCAGCAACGTCTAATTTTT 213 Query 27123 GCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCG 27182 || ||||||||||||||||| || || | |||||| |||||||| || || || Sbjct 212 GCTGGCAAACAATTGGAAGATGGTAGAACATTGAGCGATTATAACATTCAGAAAGAATCA 153 Query 27183 ACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| |||||| | || ||||| || Sbjct 152 ACTTTGCATTTGGTATTGCGTCTTCGTGGTGGTAT 118 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| |||||| |||| || ||| | ||||| | ||||| ||||| ||| Sbjct 119 ATGCAGATTTTTGTCAAAACTTTGACTGGAAAGACCATTACCTTGGAAGTTGAACCTTCC 60 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGG 27091 || ||||||| | |||||| ||||| || ||||||||||| Sbjct 59 GATACGATTGAAAACGTCAAAGCTAAAATACAGGACAAAGAAGG 16 >seq620 Length=8710 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| |||||| |||| || || |||| ||| | ||||||||||| ||| Sbjct 8602 ATGCAGATTTTTGTCAAAACTTTGACTGGAAAAACTATCACTTTGGAAGTGGAACCTTCC 8661 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCAT 27094 || | ||||| | |||||| ||||||||||| |||||||| || Sbjct 8662 GATACCATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTAT 8708 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||| |||| || || |||| ||| | ||||||||||| ||| Sbjct 8286 ATGCAAATTTTTGTTAAAACTTTGACTGGAAAAACTATCACTTTGGAAGTGGAACCTTCC 8345 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGG 27091 || | ||||| | |||||| || ||||||||||||||||| Sbjct 8346 GATACAATTGAAAACGTCAAAGCTAAGATTCAAGACAAAGAAGG 8389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434815867987200