Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10]
18,860 sequences; 56,262,437 total letters
Query= NC_029255.1
Length=129563
Score E
Sequences producing significant alignments: (Bits) Value
seq6148 96.9 3e-15
>seq6148
Length=42148
Score = 96.9 bits (106), Expect = 3e-15
Identities = 240/361 (66%), Gaps = 5/361 (1%)
Strand=Plus/Minus
Query 118824 ATATTCTGCCCCAAAAAATCTCCATTGAAAACCATAAACAGGCCCCAGATCTCCCTGGGA 118883
||||||||| || ||| | ||||||||| |||||||| || || |||||||| |
Sbjct 25513 ATATTCTGCACCGAAATGGCGCCATTGAAAGCCATAAACTGGTCCGAGATCTCCTTCTTC 25454
Query 118884 CCTAAAATCTAAACCTACTTTTCTCTGAAATTCTTTTGACCCATTAGCATTCCAAATAGC 118943
||| | || || | |||||||| | || || || || | ||| ||
Sbjct 25453 TCTATCGTTGAAGCCAAGAGAATCGAGAAATTCTCTCGAACCGTTTGCGTCCCATATTTT 25394
Query 118944 AACTCCtttttttGCCAGATCATTAGAGTTTGTAGAACCACTTAAAAACCAAAGAAGCTC 119003
|| |||||| | || || || || | || || |||| | ||||| ||||||||
Sbjct 25393 GACATTTTTTTTCGAAAGTTCTTTCGAATCAGTTGAGCCACGAATGAACCAGAGAAGCTC 25334
Query 119004 CTCAACAACGCCTCTCCAAAAAACTGTTTTTGTTGTAAACAGTGGAAAC---TGACCTCT 119060
|||| | ||||| | ||||| ||||||||| |||| || ||| ||| | |
Sbjct 25333 TTCAATGATGCCTCGATAGAAAACACGTTTTGTTGTCAACAACGGCAACGTTTGATCCCG 25274
Query 119061 AAGTGAATATCTTGTTTGTGTTCCAAAAATAGACAGAGTCCCAACACCTGTTCTATCATC 119120
| ||||||||| | ||||||||||||| || | || || ||||| |||| ||| |
Sbjct 25273 TAATGAATATCTCGATTGTGTTCCAAAACATGAGATCGTACCTACACCGGTTCGATC-TT 25215
Query 119121 TCTCTT-GATACCCTGCTCTAAAATAGTTCTAATTAGATCAAGGTATTTTTTCTCATCGT 119179
||| || |||||| | || | || | | | || ||||| | |||| | ||||| |
Sbjct 25214 TCTTTTCGATACCTTTTTCGAGAACAAGTTTGATCAGATCCAAATATTCATGTTCATCAT 25155
Query 119180 G 119180
|
Sbjct 25154 G 25154
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414381529917040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |