Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq6148 96.9 3e-15 >seq6148 Length=42148 Score = 96.9 bits (106), Expect = 3e-15 Identities = 240/361 (66%), Gaps = 5/361 (1%) Strand=Plus/Minus Query 118824 ATATTCTGCCCCAAAAAATCTCCATTGAAAACCATAAACAGGCCCCAGATCTCCCTGGGA 118883 ||||||||| || ||| | ||||||||| |||||||| || || |||||||| | Sbjct 25513 ATATTCTGCACCGAAATGGCGCCATTGAAAGCCATAAACTGGTCCGAGATCTCCTTCTTC 25454 Query 118884 CCTAAAATCTAAACCTACTTTTCTCTGAAATTCTTTTGACCCATTAGCATTCCAAATAGC 118943 ||| | || || | |||||||| | || || || || | ||| || Sbjct 25453 TCTATCGTTGAAGCCAAGAGAATCGAGAAATTCTCTCGAACCGTTTGCGTCCCATATTTT 25394 Query 118944 AACTCCtttttttGCCAGATCATTAGAGTTTGTAGAACCACTTAAAAACCAAAGAAGCTC 119003 || |||||| | || || || || | || || |||| | ||||| |||||||| Sbjct 25393 GACATTTTTTTTCGAAAGTTCTTTCGAATCAGTTGAGCCACGAATGAACCAGAGAAGCTC 25334 Query 119004 CTCAACAACGCCTCTCCAAAAAACTGTTTTTGTTGTAAACAGTGGAAAC---TGACCTCT 119060 |||| | ||||| | ||||| ||||||||| |||| || ||| ||| | | Sbjct 25333 TTCAATGATGCCTCGATAGAAAACACGTTTTGTTGTCAACAACGGCAACGTTTGATCCCG 25274 Query 119061 AAGTGAATATCTTGTTTGTGTTCCAAAAATAGACAGAGTCCCAACACCTGTTCTATCATC 119120 | ||||||||| | ||||||||||||| || | || || ||||| |||| ||| | Sbjct 25273 TAATGAATATCTCGATTGTGTTCCAAAACATGAGATCGTACCTACACCGGTTCGATC-TT 25215 Query 119121 TCTCTT-GATACCCTGCTCTAAAATAGTTCTAATTAGATCAAGGTATTTTTTCTCATCGT 119179 ||| || |||||| | || | || | | | || ||||| | |||| | ||||| | Sbjct 25214 TCTTTTCGATACCTTTTTCGAGAACAAGTTTGATCAGATCCAAATATTCATGTTCATCAT 25155 Query 119180 G 119180 | Sbjct 25154 G 25154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414381529917040