Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq718 114 9e-21 seq135 107 1e-18 seq4581 98.7 7e-16 >seq718 Length=674 Score = 114 bits (126), Expect = 9e-21 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| ||||||||| | ||||| ||| ||||| | || || || || Sbjct 46 ATGCAGATTTTCGTGAAAACTTTGACTGGAAAAACCATTACTTTGGAAGTTGAGCCTTCC 105 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || |||| | ||| |||||| ||||| |||||||||||| |||| || | Sbjct 106 GATACGATTGAAAAT--GTCAAAGCTAAAATTCAAGACAAAGAAGGTATTCCTCCAGATC 163 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| || ||||| || || ||||||||||| || | || | | |||||| | Sbjct 164 AACAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGTCGAACTCTCAGCGATTATA 223 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | ||||||||||| ||||||||||||||| ||||| | ||||| || Sbjct 224 ATATCCAAAAAGAATCCACTTTGCATTTGGTGTTGCGACTCCGTGGTGG 272 Score = 104 bits (114), Expect = 2e-17 Identities = 167/236 (71%), Gaps = 11/236 (5%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| || |||||| | ||||| ||| || || | || || ||| || Sbjct 274 ATGCAGATTTTCGTTAAAACTTTGACTGGAAAAACAATCACTTTGGAAGTTGAACCTTCC 333 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| |||||| |||||| |||||||||||| |||| || | Sbjct 334 GATACAATTGAAAAT--GTCAAAGCTAAAATACAGGACAAAGAAGGTATTCCACCAGATC 391 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGA----CGAACGCAG--CT-TGTCC 27960 | ||||| || ||||| || || ||||||||||| || ||||| | | || | | Sbjct 392 AACAACGTTTGATTTTCGCTGGCAAACAATTGGAAGATGGTCGAACTCNGAACTCTCAGC 451 Query 27961 GATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| || ||||||||||| |||||||| ||||| |||||| | ||||| || Sbjct 452 GATTATAATATCCAAAAAGAATCTACTTTGCACTTGGTGTTGCGTCTCCGTGGTGG 507 >seq135 Length=1279 Score = 107 bits (118), Expect = 1e-18 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||| |||||| | ||||| || ||||| | || || ||| || Sbjct 432 ATGCAGATTTTTGTCAAAACTTTGACTGGAAAGACCATTACTTTGGAAGTGGAACCTTCC 491 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| |||||| ||||| || ||||||||| |||| || | Sbjct 492 GATACCATTGAAAAT--GTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCTCCAGATC 549 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| | |||||||| || ||||||||||| || | || | | |||||| | Sbjct 550 AGCAACGTCTGATTTTTGCTGGCAAACAATTGGAAGATGGTCGAACTCTCAGCGATTATA 609 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 | ||||||||||| |||||||| ||||| |||||| | ||||| ||| Sbjct 610 ATATCCAAAAAGAATCTACTTTGCACTTGGTGTTGCGTCTCCGTGGTGGC 659 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| |||||||| | ||||| ||| || || | || || ||| || Sbjct 204 ATGCAGATTTTCGTGAAAACATTGACTGGAAAAACAATCACTTTGGAAGTTGAACCTTCC 263 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| |||||| |||||| |||||||||||| |||| || | Sbjct 264 GATACTATTGAAAAT--GTCAAAGCTAAAATACAGGACAAAGAAGGTATTCCACCAGATC 321 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| || |||||||| || ||||||||||| || | || | | |||||| | Sbjct 322 AACAACGTTTGATTTTTGCTGGTAAACAATTGGAAGATGGTCGAACTCTCAGCGATTATA 381 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | ||||||||||| |||||| || ||||| |||||| | || || || Sbjct 382 ATATCCAAAAAGAATCCACTTTACACTTGGTGTTGCGTCTCCGGGGTGG 430 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| || ||||| | ||||| ||| ||||| | || || ||| || Sbjct 660 ATGCAGATTTTCGTTAAAACATTGACTGGAAAAACCATTACTTTGGAAGTTGAACCTTCC 719 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| |||||| ||||| || ||||||||| |||| || | Sbjct 720 GATACCATTGAAAAT--GTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGATC 777 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| || |||||||| || ||||||||||| || | | | ||| |||||||| Sbjct 778 AACAACGTTTGATTTTTGCTGGCAAACAATTGGAAGATGGTAGAACATTGAGCGATTACA 837 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | || |||||||| |||||| || ||||| |||||| | ||||| || Sbjct 838 ATATTCAAAAAGAATCCACTTTACACTTGGTATTGCGTCTCCGTGGTGG 886 Score = 98.7 bits (108), Expect = 7e-16 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 27865 GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTT 27924 |||||| ||||| |||||||||||| |||| || || ||||| || ||||| Sbjct 51 GTCAAAGCTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTTTGATTTTC 110 Query 27925 GCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGC 27984 || || ||||||||||| || | | | ||| ||||||||| ||||| ||||| | Sbjct 111 GCTGGTAAACAATTGGAAGATGGTAGAACATTGAGCGATTACAATATCCAGAAAGAATCC 170 Query 27985 ACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||||||| ||||| | ||||| || Sbjct 171 ACTTTGCATTTGGTGTTGCGACTCCGTGGTGG 202 Score = 96.9 bits (106), Expect = 2e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 27891 AGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACG 27950 |||| ||||| || |||||||| || |||||||| || ||||||||||| || | | Sbjct 1040 AGGTATTCCGCCAGATCAGCAACGTTTGATTTTTGCTGGTAAACAATTGGAAGATGGCAG 1099 Query 27951 CAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCG 28010 | ||| ||||||||| ||||| ||||| ||||||||||||||| ||||| | || Sbjct 1100 AACATTGAGCGATTACAATATCCAGAAAGAATCCACTTTGCATTTGGTGTTGCGACTCCG 1159 Query 28011 TGGCGG 28016 ||| || Sbjct 1160 TGGTGG 1165 >seq4581 Length=275 Score = 98.7 bits (108), Expect = 7e-16 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 27865 GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTT 27924 |||||| ||||| || ||||||||| |||| || |||||||| |||||||| Sbjct 272 GTCAAAGCTAAAATCCAAGATAAAGAAGGTATTCCTCCAGATCAGCAACGTCTAATTTTT 213 Query 27925 GCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGC 27984 || || ||||||||||| || | | | ||| |||||| ||||| || ||||| Sbjct 212 GCTGGCAAACAATTGGAAGATGGTAGAACATTGAGCGATTATAACATTCAGAAAGAATCA 153 Query 27985 ACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||||||| |||||| | ||||| || Sbjct 152 ACTTTGCATTTGGTATTGCGTCTTCGTGGTGG 121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355780602803220