Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10]
18,860 sequences; 56,262,437 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq718 114 9e-21
seq135 107 1e-18
seq4581 98.7 7e-16
>seq718
Length=674
Score = 114 bits (126), Expect = 9e-21
Identities = 164/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| ||||| ||||||||| | ||||| ||| ||||| | || || || ||
Sbjct 46 ATGCAGATTTTCGTGAAAACTTTGACTGGAAAAACCATTACTTTGGAAGTTGAGCCTTCC 105
Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
|| |||| | ||| |||||| ||||| |||||||||||| |||| || |
Sbjct 106 GATACGATTGAAAAT--GTCAAAGCTAAAATTCAAGACAAAGAAGGTATTCCTCCAGATC 163
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
| ||||| || ||||| || || ||||||||||| || | || | | |||||| |
Sbjct 164 AACAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGTCGAACTCTCAGCGATTATA 223
Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
| ||||||||||| ||||||||||||||| ||||| | ||||| ||
Sbjct 224 ATATCCAAAAAGAATCCACTTTGCATTTGGTGTTGCGACTCCGTGGTGG 272
Score = 104 bits (114), Expect = 2e-17
Identities = 167/236 (71%), Gaps = 11/236 (5%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| ||||| || |||||| | ||||| ||| || || | || || ||| ||
Sbjct 274 ATGCAGATTTTCGTTAAAACTTTGACTGGAAAAACAATCACTTTGGAAGTTGAACCTTCC 333
Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
|| | || | ||| |||||| |||||| |||||||||||| |||| || |
Sbjct 334 GATACAATTGAAAAT--GTCAAAGCTAAAATACAGGACAAAGAAGGTATTCCACCAGATC 391
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGA----CGAACGCAG--CT-TGTCC 27960
| ||||| || ||||| || || ||||||||||| || ||||| | | || | |
Sbjct 392 AACAACGTTTGATTTTCGCTGGCAAACAATTGGAAGATGGTCGAACTCNGAACTCTCAGC 451
Query 27961 GATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||| || ||||||||||| |||||||| ||||| |||||| | ||||| ||
Sbjct 452 GATTATAATATCCAAAAAGAATCTACTTTGCACTTGGTGTTGCGTCTCCGTGGTGG 507
>seq135
Length=1279
Score = 107 bits (118), Expect = 1e-18
Identities = 163/230 (71%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| |||||||| |||||| | ||||| || ||||| | || || ||| ||
Sbjct 432 ATGCAGATTTTTGTCAAAACTTTGACTGGAAAGACCATTACTTTGGAAGTGGAACCTTCC 491
Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
|| | || | ||| |||||| ||||| || ||||||||| |||| || |
Sbjct 492 GATACCATTGAAAAT--GTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCTCCAGATC 549
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
||||||| | |||||||| || ||||||||||| || | || | | |||||| |
Sbjct 550 AGCAACGTCTGATTTTTGCTGGCAAACAATTGGAAGATGGTCGAACTCTCAGCGATTATA 609
Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017
| ||||||||||| |||||||| ||||| |||||| | ||||| |||
Sbjct 610 ATATCCAAAAAGAATCTACTTTGCACTTGGTGTTGCGTCTCCGTGGTGGC 659
Score = 105 bits (116), Expect = 5e-18
Identities = 162/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| ||||| |||||||| | ||||| ||| || || | || || ||| ||
Sbjct 204 ATGCAGATTTTCGTGAAAACATTGACTGGAAAAACAATCACTTTGGAAGTTGAACCTTCC 263
Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
|| | || | ||| |||||| |||||| |||||||||||| |||| || |
Sbjct 264 GATACTATTGAAAAT--GTCAAAGCTAAAATACAGGACAAAGAAGGTATTCCACCAGATC 321
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
| ||||| || |||||||| || ||||||||||| || | || | | |||||| |
Sbjct 322 AACAACGTTTGATTTTTGCTGGTAAACAATTGGAAGATGGTCGAACTCTCAGCGATTATA 381
Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
| ||||||||||| |||||| || ||||| |||||| | || || ||
Sbjct 382 ATATCCAAAAAGAATCCACTTTACACTTGGTGTTGCGTCTCCGGGGTGG 430
Score = 105 bits (116), Expect = 5e-18
Identities = 162/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| ||||| || ||||| | ||||| ||| ||||| | || || ||| ||
Sbjct 660 ATGCAGATTTTCGTTAAAACATTGACTGGAAAAACCATTACTTTGGAAGTTGAACCTTCC 719
Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
|| | || | ||| |||||| ||||| || ||||||||| |||| || |
Sbjct 720 GATACCATTGAAAAT--GTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGATC 777
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
| ||||| || |||||||| || ||||||||||| || | | | ||| ||||||||
Sbjct 778 AACAACGTTTGATTTTTGCTGGCAAACAATTGGAAGATGGTAGAACATTGAGCGATTACA 837
Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
| || |||||||| |||||| || ||||| |||||| | ||||| ||
Sbjct 838 ATATTCAAAAAGAATCCACTTTACACTTGGTATTGCGTCTCCGTGGTGG 886
Score = 98.7 bits (108), Expect = 7e-16
Identities = 113/152 (74%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 27865 GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTT 27924
|||||| ||||| |||||||||||| |||| || || ||||| || |||||
Sbjct 51 GTCAAAGCTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTTTGATTTTC 110
Query 27925 GCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGC 27984
|| || ||||||||||| || | | | ||| ||||||||| ||||| ||||| |
Sbjct 111 GCTGGTAAACAATTGGAAGATGGTAGAACATTGAGCGATTACAATATCCAGAAAGAATCC 170
Query 27985 ACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|||||||||||||| ||||| | ||||| ||
Sbjct 171 ACTTTGCATTTGGTGTTGCGACTCCGTGGTGG 202
Score = 96.9 bits (106), Expect = 2e-15
Identities = 97/126 (77%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 27891 AGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACG 27950
|||| ||||| || |||||||| || |||||||| || ||||||||||| || | |
Sbjct 1040 AGGTATTCCGCCAGATCAGCAACGTTTGATTTTTGCTGGTAAACAATTGGAAGATGGCAG 1099
Query 27951 CAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCG 28010
| ||| ||||||||| ||||| ||||| ||||||||||||||| ||||| | ||
Sbjct 1100 AACATTGAGCGATTACAATATCCAGAAAGAATCCACTTTGCATTTGGTGTTGCGACTCCG 1159
Query 28011 TGGCGG 28016
||| ||
Sbjct 1160 TGGTGG 1165
>seq4581
Length=275
Score = 98.7 bits (108), Expect = 7e-16
Identities = 113/152 (74%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 27865 GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTT 27924
|||||| ||||| || ||||||||| |||| || |||||||| ||||||||
Sbjct 272 GTCAAAGCTAAAATCCAAGATAAAGAAGGTATTCCTCCAGATCAGCAACGTCTAATTTTT 213
Query 27925 GCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGC 27984
|| || ||||||||||| || | | | ||| |||||| ||||| || |||||
Sbjct 212 GCTGGCAAACAATTGGAAGATGGTAGAACATTGAGCGATTATAACATTCAGAAAGAATCA 153
Query 27985 ACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|||||||||||||| |||||| | ||||| ||
Sbjct 152 ACTTTGCATTTGGTATTGCGTCTTCGTGGTGG 121
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355780602803220
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |