Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq135 120 7e-22 seq718 114 3e-20 >seq135 Length=1279 Score = 120 bits (132), Expect = 7e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| | ||| || ||||||||||| |||||||| || || | |||||||||| || Sbjct 635 GTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCATCTTCCAATTG 576 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||||| || || || || ||||| || || ||||||| ||||| || || || || || Sbjct 575 TTTGCCAGCAAAAATCAGACGTTGCTGATCTGGAGGAATACCTTCTTTATCTTGAATTTT 516 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||| || ||||| ||||| || || ||| || || | ||| || |||||||| || Sbjct 515 AGCTTTGACATTTTCAATGGTATCGGAAGGTTCCACTTCCAAAGTAATGGTCTTTCCAGT 456 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 | ||| || ||||| | |||||| Sbjct 455 CAAAGTTTTGACAAAAATCTGCAT 432 Score = 116 bits (128), Expect = 9e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| | |||||| ||||||||||| |||||||| || || | |||||||||| || Sbjct 407 GTGTAAAGTGGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCATCTTCCAATTG 348 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 || || || || || | |||||||| || || |||| ||||| |||||||| || || Sbjct 347 TTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCCTGTATTTT 288 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||| || ||||| || || || || |||||| || | |||||| || ||||| || Sbjct 287 AGCTTTGACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGTGATTGTTTTTCCAGT 228 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 | || || || || | |||||| Sbjct 227 CAATGTTTTCACGAAAATCTGCAT 204 >seq718 Length=674 Score = 114 bits (126), Expect = 3e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 210917 AGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 |||||| ||||||||||| |||||||| || || | |||||||||| || || || Sbjct 243 AGTGGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCATCTTCCAATTGTTTACC 184 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 ||||| || | |||||||| || ||||||| ||||| ||||| || || || ||| Sbjct 183 AGCGAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGAATTTTAGCTTT 124 Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 || ||||| || || || || ||||| || | ||| || || ||||| || | ||| Sbjct 123 GACATTTTCAATCGTATCGGAAGGCTCAACTTCCAAAGTAATGGTTTTTCCAGTCAAAGT 64 Query 211097 CTTTACAAACACCTGCAT 211114 || || || | |||||| Sbjct 63 TTTCACGAAAATCTGCAT 46 Score = 113 bits (124), Expect = 1e-19 Identities = 152/211 (72%), Gaps = 7/211 (3%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCC----TT---CCATCTT 210963 ||| | ||| || ||||||||||| |||||||| || || | || ||||||| Sbjct 484 GTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTGAGAGTTCNGAGTTCGACCATCTT 425 Query 210964 CCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCT 211023 ||| || ||||| ||||| || | |||||||| || || |||| ||||| ||||||| Sbjct 424 CCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCCT 365 Query 211024 GGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCT 211083 | || || ||| || ||||| || || || || |||||| || | |||||| || | Sbjct 364 GTATTTTAGCTTTGACATTTTCAATTGTATCGGAAGGTTCAACTTCCAAAGTGATTGTTT 305 Query 211084 TTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||| || | ||| || || || | |||||| Sbjct 304 TTCCAGTCAAAGTTTTAACGAAAATCTGCAT 274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158871898163900