Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10]
18,860 sequences; 56,262,437 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq135 86.0 5e-12
seq718 82.4 7e-11
>seq135
Length=1279
Score = 86.0 bits (94), Expect = 5e-12
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129
|| |||||||| |||| ||| |||||||| |||||||||||| || ||||| |
Sbjct 418 CGCAACACCAAGTGTAAAGTGGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCA 359
Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189
|| || | ||||| || ||||| || | ||| || || || | || | | ||||||
Sbjct 358 TCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTG 299
Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249
||| ||||| ||||| | | | |||||| | || || |||| |||||
Sbjct 298 TCCTGTATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGTGATT 239
Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
||||||| |||| ||||| || || || |||||
Sbjct 238 GTTTTTCCAGTCAATGTTTTCACGAAAATCTGCAT 204
Score = 82.4 bits (90), Expect = 7e-11
Identities = 147/215 (68%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129
|| |||||||| || | || |||||||| |||||||||||| || ||||| |
Sbjct 646 CGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCA 587
Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189
|| || | |||||||| ||||| || ||||| ||||| || | || | | |||||
Sbjct 586 TCTTCCAATTGTTTGCCAGCAAAAATCAGACGTTGCTGATCTGGAGGAATACCTTCTTTA 527
Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249
|| ||||| ||||| | | | |||||| | ||||| |||| || ||
Sbjct 526 TCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCCACTTCCAAAGTAATG 467
Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| ||||| |||| ||||| ||||| || |||||
Sbjct 466 GTCTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 432
>seq718
Length=674
Score = 82.4 bits (90), Expect = 7e-11
Identities = 147/215 (68%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129
|| ||||||||||| | ||| |||||||| |||||||||||| || ||||| |
Sbjct 260 CGCAACACCAAATGCAAAGTGGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCA 201
Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189
|| || | ||||| || || || || | ||| || || || | || | | ||||||
Sbjct 200 TCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTG 141
Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249
|| ||||| ||||| | | | ||||||| | ||| || |||| || ||
Sbjct 140 TCTTGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGCTCAACTTCCAAAGTAATG 81
Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
||||||| |||| ||||| || || || |||||
Sbjct 80 GTTTTTCCAGTCAAAGTTTTCACGAAAATCTGCAT 46
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429446866259180
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |