Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq135 138 3e-27 seq718 134 3e-26 seq10555 104 6e-17 seq18860 100 7e-16 seq4581 95.1 3e-14 >seq135 Length=1279 Score = 138 bits (152), Expect = 3e-27 Identities = 166/223 (74%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | || || | ||| | ||||||||||||||| | |||||||||| ||| || Sbjct 881 ACGGAGACGCAATACCAAGTGTAAAGTGGATTCTTTTTGAATATTGTAATCGCTCAATGT 822 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| |||||||| | || || ||||| || || | |||||||| || || |||||||| Sbjct 821 TCTACCATCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACC 762 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||| || ||||| || ||| || || ||| ||| ||||| || || | ||| || || | Sbjct 761 TTCTTTATCTTGAAT-TTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCAACTTCCA 703 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | || || || || || ||||| ||||| | ||| | ||||| Sbjct 702 AAGTAATGGTTTTTCCAGTCAATGTTTTAACGAAAATCTGCAT 660 Score = 134 bits (148), Expect = 3e-26 Identities = 149/196 (76%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| |||| || || | || | |||||||||||| |||| |||||||||| ||| || Sbjct 197 ACGGAGTCGCAACACCAAATGCAAAGTGGATTCTTTCTGGATATTGTAATCGCTCAATGT 138 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| |||||||| | || || |||||||| || | |||||||| || || |||||||| Sbjct 137 TCTACCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACC 78 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||| |||||||| || ||| || || ||| ||| || || || || | |||||| || | Sbjct 77 TTCTTTGTCTTGAAT-TTTAGCTTTGACATTTTCAATCGTATCGGAAGGTTCCACTTCCA 19 Query 225671 ACGTGATCGTCTTGCC 225686 | ||||| || || || Sbjct 18 AAGTGATAGTTTTTCC 3 Score = 134 bits (148), Expect = 3e-26 Identities = 156/208 (75%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | || || | ||| | ||| ||||||||||||| ||| |||||| | ||| Sbjct 653 ACGGAGACGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTGAGAGT 594 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || |||||||| | || || ||||| || || || ||||| || || || |||||||| Sbjct 593 TCGACCATCTTCCAATTGTTTGCCAGCAAAAATCAGACGTTGCTGATCTGGAGGAATACC 534 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTC-ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||| || ||||| || ||| |||| ||| ||| ||||| || || | |||||| || | Sbjct 533 TTCTTTATCTTGAAT-TTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCCACTTCCA 475 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTT 225698 | || || ||||| || ||||||||||| Sbjct 474 AAGTAATGGTCTTTCCAGTCAAAGTTTT 447 Score = 129 bits (142), Expect = 1e-24 Identities = 153/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| | ||||||||||||||||| ||| |||||| | ||||| |||||||| | || Sbjct 407 GTGTAAAGTGGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCATCTTCCAATTG 348 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 || ||||| || || | |||||||| || || ||||||||||| ||||| || || || Sbjct 347 TTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCCTGTAT-TT 289 Query 225630 TTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCG 225688 | || || ||| ||| || || || || | ||| || || || ||||| || || || | Sbjct 288 TAGCTTTGACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGTGATTGTTTTTCCAG 229 Query 225689 TCAAAGTTTTTATGAACACTTGCAT 225713 |||| ||||| | ||| | ||||| Sbjct 228 TCAATGTTTTCACGAAAATCTGCAT 204 Score = 93.3 bits (102), Expect = 1e-13 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| |||| || || | || | |||||||||||| |||| |||||||||| ||| || Sbjct 1160 ACGGAGTCGCAACACCAAATGCAAAGTGGATTCTTTCTGGATATTGTAATCGCTCAATGT 1101 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| |||||||| | || || ||||| || || | ||||| || || ||||||||||| Sbjct 1100 TCTGCCATCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGCTGATCTGGCGGAATACC 1041 Query 225612 T 225612 | Sbjct 1040 T 1040 >seq718 Length=674 Score = 134 bits (148), Expect = 3e-26 Identities = 165/223 (74%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| |||| || || | || | ||||||||||||||||| ||| |||||| | ||| Sbjct 267 ACGGAGTCGCAACACCAAATGCAAAGTGGATTCTTTTTGGATATTATAATCGCTGAGAGT 208 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || |||||||| | || || |||||||| || | |||||||| || || |||||||| Sbjct 207 TCGACCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATACC 148 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTC-ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||| |||||||| || ||| |||| ||| ||| || || || || | || || || | Sbjct 147 TTCTTTGTCTTGAAT-TTTAGCTTTGACATTTTCAATCGTATCGGAAGGCTCAACTTCCA 89 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | || || || || || ||||||||||| | ||| | ||||| Sbjct 88 AAGTAATGGTTTTTCCAGTCAAAGTTTTCACGAAAATCTGCAT 46 Score = 122 bits (134), Expect = 2e-22 Identities = 167/230 (73%), Gaps = 9/230 (4%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | || || | ||| | ||| ||||||||||||| ||| |||||| | ||| Sbjct 502 ACGGAGACGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTGAGAGT 443 Query 225552 TC-----TC--CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCG 225604 || || |||||||| | || || |||||||| || | |||||||| || || | Sbjct 442 TCNGAGTTCGACCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTG 383 Query 225605 GAATACCTTCCTTGTCTTGGATCTTTTGCTTC-ACAGCTTCGATGGTGTCTGAGGTTTCC 225663 |||||||||| ||||| || || ||| |||| ||| ||| || || || || | ||| Sbjct 382 GAATACCTTCTTTGTCCTGTAT-TTTAGCTTTGACATTTTCAATTGTATCGGAAGGTTCA 324 Query 225664 ACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || ||||| || || || ||||||||||| | ||| | ||||| Sbjct 323 ACTTCCAAAGTGATTGTTTTTCCAGTCAAAGTTTTAACGAAAATCTGCAT 274 Score = 104 bits (114), Expect = 6e-17 Identities = 124/166 (75%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 225549 AGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAAT 225608 ||||| |||||||| | || || |||||||| || | |||||||| || || ||||| Sbjct 673 AGTTCGACCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAAT 614 Query 225609 ACCTTCCTTGTCTTGGATCTTTTGCTTC-ACAGCTTCGATGGTGTCTGAGGTTTCCACGT 225667 |||||| || ||||| || ||| |||| ||| ||| || || || || | || || | Sbjct 613 ACCTTCTTTATCTTGAAT-TTTAGCTTTGACATTTTCAATAGTATCGGAAGGCTCAACTT 555 Query 225668 CTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | || ||||| || || || ||||||||||| | ||| | |||||| Sbjct 554 CCAAAGTGATAGTTTTTCCAGTCAAAGTTTTCACGAAAATTTGCAT 509 >seq10555 Length=106215 Score = 104 bits (114), Expect = 6e-17 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||| ||||| || |||||||| ||||| |||||||||||||| || ||||| || Sbjct 6661 GAAAATTTGTCCATCTGTGATAGAGATGACATTGGTAGGGATATAAGCTGATACATCGCC 6602 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATT 4586 ||||| ||||| | ||||| | ||||||| |||||| || || || | || ||| Sbjct 6601 AGCTTGAGTTTCAATCACAGGCAGAGCTGTTAATGATCCGCCGCCGAATTGTTCATT 6545 >seq18860 Length=13667 Score = 100 bits (110), Expect = 7e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 7573 ACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGGCGGTTTC 7632 || || ||||| ||| |||| ||||| ||| | || || || |||| ||||| || || Sbjct 11051 ACCGCCCATGCTTTTATTATAATTTTTTTTATAGTAATACCTATTATAATAGGAGGATTT 10992 Query 7633 GGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAGGCTTAAC 7692 ||||||| ||| |||||||||| | || || ||||||| |||| || | | || Sbjct 10991 GGAAATTTATTAATTCCTTTAATATTAGGCTCTGCTGATATAGCTTACCCTCGATTAAAT 10932 Query 7693 AATATAAGTTTTTGATTACTACCGCCTTCCTTA 7725 |||||||||||||| ||||| || || || ||| Sbjct 10931 AATATAAGTTTTTGGTTACTTCCACCATCTTTA 10899 Score = 84.2 bits (92), Expect = 5e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| ||||| ||||||||||| ||||| |||||||| | |||||||| ||||| || Sbjct 10500 TTCTGGATGTCCAAAAAATCAAAATAAGTGTTGATATAAAATAGGATCACCTCCTCCAAT 10559 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 ||||||||||| ||| | ||||||| ||| ||||| Sbjct 10560 AGGATCAAAAAATGAAGTTCTTAAATTTCGATCTGTTAA 10598 >seq4581 Length=275 Score = 95.1 bits (104), Expect = 3e-14 Identities = 108/144 (75%), Gaps = 1/144 (1%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | || | ||| |||||||| || | || |||||| ||| || Sbjct 126 ACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTCTGAATGTTATAATCGCTCAATGT 185 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| |||||||| | || || ||||| || || || ||||| || || || |||||||| Sbjct 186 TCTACCATCTTCCAATTGTTTGCCAGCAAAAATTAGACGTTGCTGATCTGGAGGAATACC 245 Query 225612 TTCCTTGTCTTGGATCTTTTGCTT 225635 ||| || |||||||| ||| |||| Sbjct 246 TTCTTTATCTTGGAT-TTTAGCTT 268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192243032288840