Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq135 114 1e-20 seq718 98.7 8e-16 seq4581 84.2 2e-11 >seq135 Length=1279 Score = 114 bits (126), Expect = 1e-20 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 101027 AACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCT 101086 || |||| ||| ||||| |||||||||||||||||||||||| || ||| | |||| Sbjct 871 AATACCAAGTGTAAAGTGGATTCTTTTTGAATATTGTAATCGCTCAATGTTCTACCATCT 812 Query 101087 TCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCG 101146 |||||||||||||| ||| | || | | |||||| ||| || | |||||||| || Sbjct 811 TCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTATCT 752 Query 101147 GCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--GTTTCGACGGTAATAG 101204 |||||| ||| |||| | | || || | | ||| ||| | ||||| | Sbjct 751 TGAATTTTAGCTTTGACATTTTCAATGGTATC--GGAAGGTTCAACTTCCAAAGTAATGG 694 Query 101205 TTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 |||| || ||||||||||||| ||||| ||||| Sbjct 693 TTTTTCCAGTCAATGTTTTAACGAAAATCTGCAT 660 Score = 102 bits (112), Expect = 7e-17 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 101027 AACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCT 101086 ||||||| ||||||||| ||||||||||| ||||| |||||| | |||| |||| Sbjct 643 AACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCATCT 584 Query 101087 TCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCG 101146 |||||||||||||| ||| | || || | ||| || ||| || | |||||||| || Sbjct 583 TCCAATTGTTTGCCAGCAAAAATCAGACGTTGCTGATCTGGAGGAATACCTTCTTTATCT 524 Query 101147 GCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--GTTTCGACGGTAATAG 101204 |||||| ||| |||| | | || || | | ||| ||| | ||||| | Sbjct 523 TGAATTTTAGCTTTGACATTTTCAATGGTATC--GGAAGGTTCCACTTCCAAAGTAATGG 466 Query 101205 TTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 | || || ||||| ||||| | |||||| ||||| Sbjct 465 TCTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 432 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 101027 AACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCT 101086 ||||||| ||| ||||| ||||||||||| ||||| |||||| | |||| |||| Sbjct 415 AACACCAAGTGTAAAGTGGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCATCT 356 Query 101087 TCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCG 101146 ||||||||||| || ||| | || | | |||||| ||| || | ||||||||||| Sbjct 355 TCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCC 296 Query 101147 GCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--GTTTCGACGGTAATAG 101204 ||||| ||| |||| | | || || | | ||| ||| | || || | Sbjct 295 TGTATTTTAGCTTTGACATTTTCAATAGTATC--GGAAGGTTCAACTTCCAAAGTGATTG 238 Query 101205 TTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 |||| || ||||||||||| | ||||| ||||| Sbjct 237 TTTTTCCAGTCAATGTTTTCACGAAAATCTGCAT 204 Score = 89.7 bits (98), Expect = 4e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 101027 AACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCT 101086 ||||||| |||||||| |||||||| || |||||||||||| || ||| | |||| Sbjct 187 AACACCAAATGCAAAGTGGATTCTTTCTGGATATTGTAATCGCTCAATGTTCTACCATCT 128 Query 101087 TCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCG 101146 ||||||||||| || || | || | | |||||| ||| || | ||||||||||| Sbjct 127 TCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCT 68 Query 101147 GCAATTTTTTGTTTCACAT 101165 |||||| ||| |||| Sbjct 67 TGAATTTTAGCTTTGACAT 49 >seq718 Length=674 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 101027 AACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCT 101086 ||||||| |||||||| ||||||||||| ||||| |||||| | |||| |||| Sbjct 257 AACACCAAATGCAAAGTGGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCATCT 198 Query 101087 TCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCG 101146 ||||||||||| || || | || | | |||||| ||| || | ||||||||||| Sbjct 197 TCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTGTCT 138 Query 101147 GCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTT 101206 |||||| ||| |||| | | ||| || | | | ||| | ||||| ||| Sbjct 137 TGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGCTCAACTTCCAAAGTAATGGTT 78 Query 101207 TTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 || || ||||| ||||| | ||||| ||||| Sbjct 77 TTTCCAGTCAAAGTTTTCACGAAAATCTGCAT 46 Score = 93.3 bits (102), Expect = 3e-14 Identities = 155/221 (70%), Gaps = 11/221 (5%) Strand=Plus/Minus Query 101027 AACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTT-----TTGG 101081 ||||||| ||||||||| ||||||||||| ||||| |||||| | |||| || | Sbjct 492 AACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTGAGAGTTCNGAGTTCG 433 Query 101082 A--ATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTC 101139 | |||||||||||||||||| || | || | | |||||| ||| || | ||||| Sbjct 432 ACCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTC 373 Query 101140 TTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--GTTTCGACG 101197 |||||| ||||| ||| |||| | | || || | | ||| ||| | Sbjct 372 TTTGTCCTGTATTTTAGCTTTGACATTTTCAATTGTATC--GGAAGGTTCAACTTCCAAA 315 Query 101198 GTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 || || ||||| || ||||| ||||||| ||||| ||||| Sbjct 314 GTGATTGTTTTTCCAGTCAAAGTTTTAACGAAAATCTGCAT 274 >seq4581 Length=275 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 101027 AACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCT 101086 || |||| ||||||||||||||||| ||||| || |||||| || ||| | |||| Sbjct 136 AATACCAAATGCAAAGTTGATTCTTTCTGAATGTTATAATCGCTCAATGTTCTACCATCT 195 Query 101087 TCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTC 101145 |||||||||||||| ||| | || || | ||| || ||| || | |||||||| || Sbjct 196 TCCAATTGTTTGCCAGCAAAAATTAGACGTTGCTGATCTGGAGGAATACCTTCTTTATC 254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409566636904740