Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq4298 289 2e-73 >seq4298 Length=5336 Score = 289 bits (320), Expect = 2e-73 Identities = 604/892 (68%), Gaps = 12/892 (1%) Strand=Plus/Minus Query 4248 ACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAAC 4307 |||||| |||||| ||||| | || || |||||||| ||||||||||| || || || Sbjct 2295 ACACCACTTTTTTGATATTCTGCAACACGTTTTTCGAAAAAATTAGTTTTACCCTCCAAA 2236 Query 4308 GAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGA 4367 || || | |||||| ||| || ||||| ||| |||||| ||| || | || Sbjct 2235 GAGATCTGTTCCATGAAAGAGAATGGATTTTTTGTATTGTAAAATTTGCCAACATCCAGC 2176 Query 4368 GCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATT 4427 | || | ||| || ||||| |||| || |||| ||||| | || || ||| Sbjct 2175 TCGACCAACAAACGATCAGCGCAGTATTCGATGTACTCACTCATCAAAGTGCTATTGATT 2116 Query 4428 CCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCT 4487 || || || ||||| | |||| |||||||| ||||| || || || |||| Sbjct 2115 CCGATCAAGGAGACAGGCAAGGCGTCGGTCAAAAATTCTTGCTCAATCTCGACCGCTTTG 2056 Query 4488 GTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAA 4547 |||| || | || || | ||| ||| ||| || | || || || | ||| Sbjct 2055 GTGACAATCTTCAAGATCTTCACCCGAGAAGGTCGATTGACGATGTGTCGGAAAAGCAAA 1996 Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGTTAA 4606 || |||||||||||||| | ||||| || | || | |||| ||| ||| || || || Sbjct 1995 CAAGCAAAATCACAATGAAGTCCTTCATCAC-GCGAGATCAATTCATTACTGAAAGTCAA 1937 Query 4607 TCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAA 4666 || ||||| | |||| |||||||||||||| ||||| ||||| || ||||| || || Sbjct 1936 GCCAGGCATCAGTCCTCGTTTTTTAAGCCAAAAGATAGCCGCAAACGAGCCAGAGAAAAA 1877 Query 4667 TATGCCTTCTACGGCGGCAAACGCTACTAATCG-GGACCCGAACGAGCTGGCT-TTGTCT 4724 || ||||| ||||| || ||||| || | || | | | | | || || | ||| Sbjct 1876 GATTCCTTCGACGGCAGCGAACGCAACAAGACGTTCAGCAAAGCTAACT--CTATCATCT 1819 Query 4725 TTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCG 4784 | | ||||| | | ||||| || ||||| |||| || || || | ||| | || || Sbjct 1818 TGAGTCCATCTGATAGCCCATTTCGCTTTCTTCTCGACACAAGGCAATGTTTGAATGGCA 1759 Query 4785 TTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATAC 4844 || || | | | | ||| || |||| ||||| || | || || | |||| Sbjct 1758 TTGAAAAGAAAATCTCTCTCATATTTATCTTTTATATAGGTATTGATGAGCAACGAATAC 1699 Query 4845 ATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTT 4904 |||||||| || |||||||| || || ||||||||||| ||||| |||| ||| |||| | Sbjct 1698 ATTTCAGAGTGAATATTTTCGATGGCGATCTGAAATCCATAAAAACATCGAGCCTCTGGT 1639 Query 4905 ACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCT 4964 | ||||| || | || | || ||| || || || ||||| || ||||| || Sbjct 1638 ATCTGAACATCACGAATGAAACGCTCAGCTAGATTCTCATTAACTATTCCATCACTTGCA 1579 Query 4965 GCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTA---AGTTTTTTC 5021 ||||| || || || |||||||| || | | |||| ||| |||| | ||| Sbjct 1578 GCAAAGAATGCTAACACATGAGAGAT---GAAATGTTTTTCATTCTTATTCAACGAGTTC 1522 Query 5022 CAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCT 5081 || || | ||| | ||||||| |||||||| || ||||||||||| || |||||| Sbjct 1521 CAATGATCTAGATCGCGACTTAAATCGACTTCTTCGACTGTCCAAAACGATGCCTCCGCT 1462 Query 5082 TTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAATC 5133 || |||||||| ||| ||||| || ||||| |||| | ||||||| Sbjct 1461 TTCTTGTACATCTCCCAGATATCTTTGTATTGAATTGGAAACAAAACAAATC 1410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426951439980380