Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10]
18,860 sequences; 56,262,437 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq10223 560 1e-154
seq4298 360 3e-94
>seq10223
Length=44262
Score = 560 bits (620), Expect = 1e-154
Identities = 1183/1746 (68%), Gaps = 34/1746 (2%)
Strand=Plus/Plus
Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186
|||||||| || || || ||||| ||| | ||||| || || |||||||| | |||
Sbjct 20293 TGAAATTCGCCTGATAAAACTCTCCGATTATAAATGTTGGAAGTGTATGGTTCAAATGAT 20352
Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246
||||||||||| || |||||||| || || || || ||||| || || || | | ||||
Sbjct 20353 TCATTGTTTCCTAAGATTTGAGCTGTCGATGCGGTCGGCATCGGAGCAACTAGAAGACTA 20412
Query 77247 TTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAA 77306
|||| ||||| | | | || || ||||| | | || ||||||||| ||||| | |
Sbjct 20413 TTTCGTAGACCGTATTTAGCAATATTTTCTTTCAATTTTTCCCAATCCCAGAGATCGGTA 20472
Query 77307 GGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTATAT 77366
||| |||||| | ||||||||| ||||| || || || ||||| | |||
Sbjct 20473 GGTTTGCGATCCCACATATCGTATTGGAGAATACCTTTCGATGCGGGAGATCCTTCATAG 20532
Query 77367 GTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAATAA 77426
|||||||||||||| | | |||||| |||||| || || || ||||||||||||||
Sbjct 20533 GTTTCATAAGGTCCATGGATAGCAGCTAATTCACAGCTAGCCTCTAATGCTCCGTAATAG 20592
Query 77427 ATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAATGT 77486
|||||||||||||| | |||| | | || |||||| ||| ||||| ||||| | |
Sbjct 20593 ATTGTTTCGAAAATTTGTATATTCAATTTTTTCGCTTCATCACTTTCAAAAGGATA-TCT 20651
Query 77487 AAA-AGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTT 77545
|| | ||| || ||||| |||| || || || || || ||||| ||||| |||| | |
Sbjct 20652 AAGCAAAATGAACGCATCAGCTAGACCTTGTACGCCGATTCCAATCGGTCTGTGTCGCAT 20711
Query 77546 ATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATT 77605
||| ||| |||||| || | ||||||||||| | || || ||||| || | |||
Sbjct 20712 ATTTGAACGACGAGCTTCCGGCAAGGGATAATAATTTACATCAATTATTTTGTTCAAATT 20771
Query 77606 TCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCATCTATA-- 77663
| | | ||||| | | || || | | |||||| | | || | |
Sbjct 20772 TTTCGTCATAACTTTGATGATGTTTTTCAACTCTCCAAAATCGTAGGATAGATTTTTTTG 20831
Query 77664 ----ACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCAT-TAGCGT 77718
||||| | || || | || |||||||||||||| |||| || | | |||
Sbjct 20832 ATTGACAAATTTTGGTAACGCAACCGAAGCTAGATTACAAACAGCTATTTCGTCTGGCGA 20891
Query 77719 TGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTT 77778
|| ||||| | |||||||| || |||||| |||||||| ||||| ||||||| ||
Sbjct 20892 TGA-ATATTCAACAATCTCGGTGCAAAGATTAGAGCATTTGATGGTGCCAAGATTTTTTT 20950
Query 77779 GGTTGCTCTTTTTATTGCA-TGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATC 77837
| || ||| |||| || ||| || || || | || || || || |||||||| | |
Sbjct 20951 GATTAGATTTTCTATTACAATGA-TCTTTGTAGACCATGAATGGTGTTCCGGTTTCCACC 21009
Query 77838 TGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTG---TATCGC 77894
|| | |||| || | ||| | | | |||| || | | |||| |||||
Sbjct 21010 TGAGCATCGACTATTGCGAACCAAAGTTCACGAGCTGGAAT--TTG-TTTGCGATATCGA 21066
Query 77895 CTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAAT 77954
||||| | ||||||| ||| || ||| ||||| || ||||||||||| | ||||
Sbjct 21067 TTCTCTTTCTCATATTTCTCATAGAGAGCTTCGAATTCTTCGCCCCAAACATCTTGCAAT 21126
Query 77955 CCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATC--TTCCTTAACTCGTTTCA 78012
||||| ||||| || ||||||||||| ||||| | ||||| || | ||| ||||||
Sbjct 21127 CCAGGACATTCTTTGGGGCACATCAACGACCAAACCCCATCGGTTTCGCAAC--GTTTCA 21184
Query 78013 TAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTC 78072
| || | ||| |||||||||| ||| || ||||||| || | |||||| |
Sbjct 21185 TGAACAAATCCGGTATCCATAATGCATAGAAAAGATCTCTGGCACGTAATTCTTCTGAGC 21244
Query 78073 CTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATA 78132
| ||||| ||| | || | ||| || | |||||| | |||||| ||||| | |||||
Sbjct 21245 CAGTATTTCGTTTCAAATTTAAAAAGTCGAAAATATCTGCATGCCACGGTTCCAAATATA 21304
Query 78133 TTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTAT 78192
|||| | | | ||||| || |||||||| || ||||| | ||| | ||||| | || |
Sbjct 21305 TTGCGAAAGCACCAGGACGCTTATTACCACCTTGATCGACATAACGAGCGGTATCGTTGT 21364
Query 78193 AAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTC 78252
|||||| |||||| |||| | ||| || || || || || ||| || || ||
Sbjct 21365 AAACTCGCAACATCGGAACCAAACCATTTGAATGACCTTTGGTGCCAACTATGTACGATC 21424
Query 78253 CACTTGCGCGAATATTACTAATGGATATC----CCTATTCCTCCTGCCATCTTAGATATT 78308
|| |||| |||||| |||| | || || || || || || ||| |||||
Sbjct 21425 CATTTGCTCGAATAC----AATGAACATTAAGACCGATGCCACCGGCTGACTTCGATATA 21480
Query 78309 AGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCAT-GTTAAG 78367
| ||| || ||||||| |||||||| ||||| || ||||| ||||| ||| || ||
Sbjct 21481 ATAGCACATTGTTTCAACGTATCGTAAATACCTTCAATACTATCATCGGCCATCGTCAAT 21540
Query 78368 AAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGC 78427
|| |||||| |||||||||| |||| || || | |||||| || || || || ||
Sbjct 21541 AA-AAAACATGAAGACATTTGAGGATGGGTTGTACCAGAATTAAACAAAGTAGGTGAGGC 21599
Query 78428 ATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCA 78487
|| ||||| || ||| | |||||| || || || || || || || || ||
Sbjct 21600 GTGTGTAAAAAGACCTTTAGACATTAGATTATACGTCTCGATGGCCGAATCAATATCTTC 21659
Query 78488 TTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATT 78547
|| ||| || || | || || | ||||||||||||||| |||||||| || ||
Sbjct 21660 TTTATGTATACCGATGGCGACTCTCATCAACATATGCTGTGGTCTTTCGACAACTTTCCC 21719
Query 78548 ATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 78607
||| | | || | || | | || ||||| ||||||||||| ||||| |||
Sbjct 21720 ATTCACTCGTAATAGATAGCTTCGTAATAAGGTTTTGAAACCAAAATAATTGTAACTAAA 21779
Query 78608 GTCTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTTGGTAACAATATCCAT 78667
|||| || ||||| || | ||||| || ||| || | | || || |
Sbjct 21780 ATCTCGATCATAAATTATCGCTGAATTGAGACGATCAGAGTTATCCATTACGATTTTATA 21839
Query 78668 GACAGTAGTTGAAATAATAGGAGATCG-TACACCATTTTTAGGATTAACATAGTTAAATA 78726
||| | | ||||| ||| || | | || |||| || ||||| || | |
Sbjct 21840 AACATCATCGGCGATAATCGGA-ATAGATTTGCCTGTTTTCTCATCGACATAATTGTAGA 21898
Query 78727 AATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTA 78786
||| | || ||||| || ||| || || || || ||||||||||| | || |
Sbjct 21899 GATCATGAATGACATCTGAGAAATTTTTCTTCGTCTCTTTTTGTAGATTAGAAATAGAGA 21958
Query 78787 TTCTTGCAGCTAGAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTG 78846
||| ||||| |||| ||||||||| | ||||||||| || || || || || || |
Sbjct 21959 TTCGAGCAGCGAGAACAGCATAATCGGTATGTTGTGTTGTCATCGTAGCAGCGATCTCCG 22018
Query 78847 CCGCTA 78852
| ||||
Sbjct 22019 CAGCTA 22024
Score = 125 bits (138), Expect = 1e-23
Identities = 217/315 (69%), Gaps = 3/315 (1%)
Strand=Plus/Plus
Query 76773 TTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCA 76832
||||||| || || ||||| | | | || ||| | ||||||||||| ||||| ||
Sbjct 19863 TTATCCACAGTGAATTGAATGGCATTGGCCGCTGGTCTAGTACGTAGATAATACATTCCC 19922
Query 76833 GTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGA 76892
||||| | ||| | ||| | ||||||||||| ||||| ||||| | |||
Sbjct 19923 GTTTTCAAACCATTTCGCCAGCAATAGAAATGCATCGATGTCATTTTGGCCATAGTAGCC 19982
Query 76893 TCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCC 76952
|| || ||||||||||||| || ||||||||||||||||| || || | ||| | |||
Sbjct 19983 TCAGCGATATGAATATTCAAAGATTGACTTTGATCGATGAACGCACCACGATCTACAGCC 20042
Query 76953 ATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCA 77012
|| | ||| | || ||||| || ||||||| || ||| | | | ||| || ||
Sbjct 20043 ATCTCACAAATTCTTTTCTGAGGGATCTCCCAAACGGTCTTGTAGAGTGCTTTAATTTCT 20102
Query 77013 TCTGG---AAGGTTTGTATTTTGAATGGAACCACCATCTGATATAATTGTATTCTTTATA 77069
| ||| || | ||||||| || ||||| | || | || ||| | | || | |
Sbjct 20103 TTTGGAATAATATCAATATTTTGTATAGAACCTCGATTAGCAATGATTTTCATTTTCAAA 20162
Query 77070 TCATCATTCCACAAT 77084
| ||||| |||||||
Sbjct 20163 TGATCATCCCACAAT 20177
>seq4298
Length=5336
Score = 360 bits (398), Expect = 3e-94
Identities = 624/898 (69%), Gaps = 17/898 (2%)
Strand=Plus/Minus
Query 47848 TTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATAT 47907
||||||||||||| | |||||||| ||||||||||||||||| || ||||| || || |
Sbjct 2288 TTTTTTGATATTCTGCAACACGTTTTTCGAAAAAATTAGTTTTACCCTCCAAAGAGATCT 2229
Query 47908 TTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAA-ATCCTAATTCTGAA 47966
|||||| ||| |||||||| || ||| |||| ||| || |||| | ||
Sbjct 2228 GTTCCATGAAAGAGAATGGATTTTTTGTATTGTAAAATTTGCCAACATCC-AGCTCGACC 2170
Query 47967 ATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATA 48026
| || | ||| || | |||| || || |||||| | ||| ||||| ||
Sbjct 2169 AACAAACGATCAGCGCAGTATTCGATGTACTCACTCATCAAAGTGCTATTGATTCCGATC 2110
Query 48027 AGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCC---ACT 48083
| || || | || || || | ||| ||||| || || ||| || | ||
Sbjct 2109 AAGGAGACAGGCAAGGCGTCGGTCAAAAATTCTTGCTCAATCTCGACCGCTTTGGTGACA 2050
Query 48084 ATTATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACAT 48143
|| || | | | | || | ||| ||| | | ||| || | |||||
Sbjct 2049 ATCTTCAAGAT---CTTCACCCGAGAAGGTCGATTGACGATGTGTCGGAAAAGCAAACAA 1993
Query 48144 GCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCG 48203
||||||||||||||||| |||||||| | || ||||| ||| || || | ||
Sbjct 1992 GCAAAATCACAATGAAGTCCTTCATCACGCGAGATCAATTCATTACTGAAAGTCAAGCCA 1933
Query 48204 GGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATG 48263
||||| ||||| |||||||| |||||||| || ||||| || || ||||| || || ||
Sbjct 1932 GGCATCAGTCCTCGTTTTTTAAGCCAAAAGATAGCCGCAAACGAGCCAGAGAAAAAGATT 1873
Query 48264 CCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCT---TCGTTGTGTATC 48320
||||| ||||| || || || ||| | || | | || || || | || ||
Sbjct 1872 CCTTCGACGGCAGCGAACGCAACAAGACGTTCAGCAAAGCTAACTCTATCATCTTGAGTC 1813
Query 48321 CACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAG 48380
|| | ||||| | || ||||||| |||||||||| ||||| || ||||| ||
Sbjct 1812 CATCTGATAGCCCATTTCGCTTTCTTCTCGACACAAGGCAATGTTTGAATGGCATTGAAA 1753
Query 48381 AGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTA--AAAGACTATACATTT 48438
||||| | | | |||| ||||||| | || |||| || | || || ||||||||
Sbjct 1752 AGAAAATCTCTCTCATATTTATCTTTTATATAGGTATTGATGAGCAACGA--ATACATTT 1695
Query 48439 CGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCT 48498
| |||||||||||||| || || ||||||||||| |||||||||| || |||| ||||
Sbjct 1694 CAGAGTGAATATTTTCGATGGCGATCTGAAATCCATAAAAACATCGAGCCTCTGGTATCT 1635
Query 48499 GTACCTC-CGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCA 48557
| || || || | ||| || ||||| | ||||||||| |||||||||||||| ||||||
Sbjct 1634 GAACATCACGAATGAAA-CGCTCAGCTAGATTCTCATTAACTATTCCATCACTTGCAGCA 1576
Query 48558 AAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCA 48617
|| |||||||| ||||| || |||| |||||| || | ||| ||||| | |
Sbjct 1575 AAGAATGCTAACACATGAGAGATGAAATGTTTTTCATTCTTATTCAACGAGTTCCAATGA 1516
Query 48618 TTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTA 48677
| | ||| || ||| |||||||| |||||||||| |||||||| ||||| ||
Sbjct 1515 TCTAGATCGCGACTTAAATCGACTTCTTCGACTGTCCAAAACGATGCCTCCGCTTTCTTG 1456
Query 48678 TACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTTT 48735
||||| | ||| ||||| ||||||| ||||| || | |||||||| ||| |||||||
Sbjct 1455 TACATCTCCCAGATATCTTTGTATTGAATTGGAAACAAAACAAATCGATTCGGATTTT 1398
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694505031830400
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