Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq10223 560 1e-154 seq4298 360 3e-94 >seq10223 Length=44262 Score = 560 bits (620), Expect = 1e-154 Identities = 1183/1746 (68%), Gaps = 34/1746 (2%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 |||||||| || || || ||||| ||| | ||||| || || |||||||| | ||| Sbjct 20293 TGAAATTCGCCTGATAAAACTCTCCGATTATAAATGTTGGAAGTGTATGGTTCAAATGAT 20352 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||||||||| || |||||||| || || || || ||||| || || || | | |||| Sbjct 20353 TCATTGTTTCCTAAGATTTGAGCTGTCGATGCGGTCGGCATCGGAGCAACTAGAAGACTA 20412 Query 77247 TTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAA 77306 |||| ||||| | | | || || ||||| | | || ||||||||| ||||| | | Sbjct 20413 TTTCGTAGACCGTATTTAGCAATATTTTCTTTCAATTTTTCCCAATCCCAGAGATCGGTA 20472 Query 77307 GGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTATAT 77366 ||| |||||| | ||||||||| ||||| || || || ||||| | ||| Sbjct 20473 GGTTTGCGATCCCACATATCGTATTGGAGAATACCTTTCGATGCGGGAGATCCTTCATAG 20532 Query 77367 GTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAATAA 77426 |||||||||||||| | | |||||| |||||| || || || |||||||||||||| Sbjct 20533 GTTTCATAAGGTCCATGGATAGCAGCTAATTCACAGCTAGCCTCTAATGCTCCGTAATAG 20592 Query 77427 ATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAATGT 77486 |||||||||||||| | |||| | | || |||||| ||| ||||| ||||| | | Sbjct 20593 ATTGTTTCGAAAATTTGTATATTCAATTTTTTCGCTTCATCACTTTCAAAAGGATA-TCT 20651 Query 77487 AAA-AGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTT 77545 || | ||| || ||||| |||| || || || || || ||||| ||||| |||| | | Sbjct 20652 AAGCAAAATGAACGCATCAGCTAGACCTTGTACGCCGATTCCAATCGGTCTGTGTCGCAT 20711 Query 77546 ATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATT 77605 ||| ||| |||||| || | ||||||||||| | || || ||||| || | ||| Sbjct 20712 ATTTGAACGACGAGCTTCCGGCAAGGGATAATAATTTACATCAATTATTTTGTTCAAATT 20771 Query 77606 TCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCATCTATA-- 77663 | | | ||||| | | || || | | |||||| | | || | | Sbjct 20772 TTTCGTCATAACTTTGATGATGTTTTTCAACTCTCCAAAATCGTAGGATAGATTTTTTTG 20831 Query 77664 ----ACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCAT-TAGCGT 77718 ||||| | || || | || |||||||||||||| |||| || | | ||| Sbjct 20832 ATTGACAAATTTTGGTAACGCAACCGAAGCTAGATTACAAACAGCTATTTCGTCTGGCGA 20891 Query 77719 TGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTT 77778 || ||||| | |||||||| || |||||| |||||||| ||||| ||||||| || Sbjct 20892 TGA-ATATTCAACAATCTCGGTGCAAAGATTAGAGCATTTGATGGTGCCAAGATTTTTTT 20950 Query 77779 GGTTGCTCTTTTTATTGCA-TGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATC 77837 | || ||| |||| || ||| || || || | || || || || |||||||| | | Sbjct 20951 GATTAGATTTTCTATTACAATGA-TCTTTGTAGACCATGAATGGTGTTCCGGTTTCCACC 21009 Query 77838 TGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTG---TATCGC 77894 || | |||| || | ||| | | | |||| || | | |||| ||||| Sbjct 21010 TGAGCATCGACTATTGCGAACCAAAGTTCACGAGCTGGAAT--TTG-TTTGCGATATCGA 21066 Query 77895 CTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAAT 77954 ||||| | ||||||| ||| || ||| ||||| || ||||||||||| | |||| Sbjct 21067 TTCTCTTTCTCATATTTCTCATAGAGAGCTTCGAATTCTTCGCCCCAAACATCTTGCAAT 21126 Query 77955 CCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATC--TTCCTTAACTCGTTTCA 78012 ||||| ||||| || ||||||||||| ||||| | ||||| || | ||| |||||| Sbjct 21127 CCAGGACATTCTTTGGGGCACATCAACGACCAAACCCCATCGGTTTCGCAAC--GTTTCA 21184 Query 78013 TAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTC 78072 | || | ||| |||||||||| ||| || ||||||| || | |||||| | Sbjct 21185 TGAACAAATCCGGTATCCATAATGCATAGAAAAGATCTCTGGCACGTAATTCTTCTGAGC 21244 Query 78073 CTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATA 78132 | ||||| ||| | || | ||| || | |||||| | |||||| ||||| | ||||| Sbjct 21245 CAGTATTTCGTTTCAAATTTAAAAAGTCGAAAATATCTGCATGCCACGGTTCCAAATATA 21304 Query 78133 TTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTAT 78192 |||| | | | ||||| || |||||||| || ||||| | ||| | ||||| | || | Sbjct 21305 TTGCGAAAGCACCAGGACGCTTATTACCACCTTGATCGACATAACGAGCGGTATCGTTGT 21364 Query 78193 AAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTC 78252 |||||| |||||| |||| | ||| || || || || || ||| || || || Sbjct 21365 AAACTCGCAACATCGGAACCAAACCATTTGAATGACCTTTGGTGCCAACTATGTACGATC 21424 Query 78253 CACTTGCGCGAATATTACTAATGGATATC----CCTATTCCTCCTGCCATCTTAGATATT 78308 || |||| |||||| |||| | || || || || || || ||| ||||| Sbjct 21425 CATTTGCTCGAATAC----AATGAACATTAAGACCGATGCCACCGGCTGACTTCGATATA 21480 Query 78309 AGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCAT-GTTAAG 78367 | ||| || ||||||| |||||||| ||||| || ||||| ||||| ||| || || Sbjct 21481 ATAGCACATTGTTTCAACGTATCGTAAATACCTTCAATACTATCATCGGCCATCGTCAAT 21540 Query 78368 AAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGC 78427 || |||||| |||||||||| |||| || || | |||||| || || || || || Sbjct 21541 AA-AAAACATGAAGACATTTGAGGATGGGTTGTACCAGAATTAAACAAAGTAGGTGAGGC 21599 Query 78428 ATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCA 78487 || ||||| || ||| | |||||| || || || || || || || || || Sbjct 21600 GTGTGTAAAAAGACCTTTAGACATTAGATTATACGTCTCGATGGCCGAATCAATATCTTC 21659 Query 78488 TTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATT 78547 || ||| || || | || || | ||||||||||||||| |||||||| || || Sbjct 21660 TTTATGTATACCGATGGCGACTCTCATCAACATATGCTGTGGTCTTTCGACAACTTTCCC 21719 Query 78548 ATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 78607 ||| | | || | || | | || ||||| ||||||||||| ||||| ||| Sbjct 21720 ATTCACTCGTAATAGATAGCTTCGTAATAAGGTTTTGAAACCAAAATAATTGTAACTAAA 21779 Query 78608 GTCTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTTGGTAACAATATCCAT 78667 |||| || ||||| || | ||||| || ||| || | | || || | Sbjct 21780 ATCTCGATCATAAATTATCGCTGAATTGAGACGATCAGAGTTATCCATTACGATTTTATA 21839 Query 78668 GACAGTAGTTGAAATAATAGGAGATCG-TACACCATTTTTAGGATTAACATAGTTAAATA 78726 ||| | | ||||| ||| || | | || |||| || ||||| || | | Sbjct 21840 AACATCATCGGCGATAATCGGA-ATAGATTTGCCTGTTTTCTCATCGACATAATTGTAGA 21898 Query 78727 AATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTA 78786 ||| | || ||||| || ||| || || || || ||||||||||| | || | Sbjct 21899 GATCATGAATGACATCTGAGAAATTTTTCTTCGTCTCTTTTTGTAGATTAGAAATAGAGA 21958 Query 78787 TTCTTGCAGCTAGAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTG 78846 ||| ||||| |||| ||||||||| | ||||||||| || || || || || || | Sbjct 21959 TTCGAGCAGCGAGAACAGCATAATCGGTATGTTGTGTTGTCATCGTAGCAGCGATCTCCG 22018 Query 78847 CCGCTA 78852 | |||| Sbjct 22019 CAGCTA 22024 Score = 125 bits (138), Expect = 1e-23 Identities = 217/315 (69%), Gaps = 3/315 (1%) Strand=Plus/Plus Query 76773 TTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCA 76832 ||||||| || || ||||| | | | || ||| | ||||||||||| ||||| || Sbjct 19863 TTATCCACAGTGAATTGAATGGCATTGGCCGCTGGTCTAGTACGTAGATAATACATTCCC 19922 Query 76833 GTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGA 76892 ||||| | ||| | ||| | ||||||||||| ||||| ||||| | ||| Sbjct 19923 GTTTTCAAACCATTTCGCCAGCAATAGAAATGCATCGATGTCATTTTGGCCATAGTAGCC 19982 Query 76893 TCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCC 76952 || || ||||||||||||| || ||||||||||||||||| || || | ||| | ||| Sbjct 19983 TCAGCGATATGAATATTCAAAGATTGACTTTGATCGATGAACGCACCACGATCTACAGCC 20042 Query 76953 ATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCA 77012 || | ||| | || ||||| || ||||||| || ||| | | | ||| || || Sbjct 20043 ATCTCACAAATTCTTTTCTGAGGGATCTCCCAAACGGTCTTGTAGAGTGCTTTAATTTCT 20102 Query 77013 TCTGG---AAGGTTTGTATTTTGAATGGAACCACCATCTGATATAATTGTATTCTTTATA 77069 | ||| || | ||||||| || ||||| | || | || ||| | | || | | Sbjct 20103 TTTGGAATAATATCAATATTTTGTATAGAACCTCGATTAGCAATGATTTTCATTTTCAAA 20162 Query 77070 TCATCATTCCACAAT 77084 | ||||| ||||||| Sbjct 20163 TGATCATCCCACAAT 20177 >seq4298 Length=5336 Score = 360 bits (398), Expect = 3e-94 Identities = 624/898 (69%), Gaps = 17/898 (2%) Strand=Plus/Minus Query 47848 TTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATAT 47907 ||||||||||||| | |||||||| ||||||||||||||||| || ||||| || || | Sbjct 2288 TTTTTTGATATTCTGCAACACGTTTTTCGAAAAAATTAGTTTTACCCTCCAAAGAGATCT 2229 Query 47908 TTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAA-ATCCTAATTCTGAA 47966 |||||| ||| |||||||| || ||| |||| ||| || |||| | || Sbjct 2228 GTTCCATGAAAGAGAATGGATTTTTTGTATTGTAAAATTTGCCAACATCC-AGCTCGACC 2170 Query 47967 ATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATA 48026 | || | ||| || | |||| || || |||||| | ||| ||||| || Sbjct 2169 AACAAACGATCAGCGCAGTATTCGATGTACTCACTCATCAAAGTGCTATTGATTCCGATC 2110 Query 48027 AGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCC---ACT 48083 | || || | || || || | ||| ||||| || || ||| || | || Sbjct 2109 AAGGAGACAGGCAAGGCGTCGGTCAAAAATTCTTGCTCAATCTCGACCGCTTTGGTGACA 2050 Query 48084 ATTATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACAT 48143 || || | | | | || | ||| ||| | | ||| || | ||||| Sbjct 2049 ATCTTCAAGAT---CTTCACCCGAGAAGGTCGATTGACGATGTGTCGGAAAAGCAAACAA 1993 Query 48144 GCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCG 48203 ||||||||||||||||| |||||||| | || ||||| ||| || || | || Sbjct 1992 GCAAAATCACAATGAAGTCCTTCATCACGCGAGATCAATTCATTACTGAAAGTCAAGCCA 1933 Query 48204 GGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATG 48263 ||||| ||||| |||||||| |||||||| || ||||| || || ||||| || || || Sbjct 1932 GGCATCAGTCCTCGTTTTTTAAGCCAAAAGATAGCCGCAAACGAGCCAGAGAAAAAGATT 1873 Query 48264 CCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCT---TCGTTGTGTATC 48320 ||||| ||||| || || || ||| | || | | || || || | || || Sbjct 1872 CCTTCGACGGCAGCGAACGCAACAAGACGTTCAGCAAAGCTAACTCTATCATCTTGAGTC 1813 Query 48321 CACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAG 48380 || | ||||| | || ||||||| |||||||||| ||||| || ||||| || Sbjct 1812 CATCTGATAGCCCATTTCGCTTTCTTCTCGACACAAGGCAATGTTTGAATGGCATTGAAA 1753 Query 48381 AGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTA--AAAGACTATACATTT 48438 ||||| | | | |||| ||||||| | || |||| || | || || |||||||| Sbjct 1752 AGAAAATCTCTCTCATATTTATCTTTTATATAGGTATTGATGAGCAACGA--ATACATTT 1695 Query 48439 CGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCT 48498 | |||||||||||||| || || ||||||||||| |||||||||| || |||| |||| Sbjct 1694 CAGAGTGAATATTTTCGATGGCGATCTGAAATCCATAAAAACATCGAGCCTCTGGTATCT 1635 Query 48499 GTACCTC-CGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCA 48557 | || || || | ||| || ||||| | ||||||||| |||||||||||||| |||||| Sbjct 1634 GAACATCACGAATGAAA-CGCTCAGCTAGATTCTCATTAACTATTCCATCACTTGCAGCA 1576 Query 48558 AAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCA 48617 || |||||||| ||||| || |||| |||||| || | ||| ||||| | | Sbjct 1575 AAGAATGCTAACACATGAGAGATGAAATGTTTTTCATTCTTATTCAACGAGTTCCAATGA 1516 Query 48618 TTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTA 48677 | | ||| || ||| |||||||| |||||||||| |||||||| ||||| || Sbjct 1515 TCTAGATCGCGACTTAAATCGACTTCTTCGACTGTCCAAAACGATGCCTCCGCTTTCTTG 1456 Query 48678 TACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTTT 48735 ||||| | ||| ||||| ||||||| ||||| || | |||||||| ||| ||||||| Sbjct 1455 TACATCTCCCAGATATCTTTGTATTGAATTGGAAACAAAACAAATCGATTCGGATTTT 1398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694505031830400