Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq10223 509 2e-139 seq4298 352 4e-92 >seq10223 Length=44262 Score = 509 bits (564), Expect = 2e-139 Identities = 1038/1527 (68%), Gaps = 26/1527 (2%) Strand=Plus/Plus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 |||||||| || || || ||||| ||| | ||||| || || |||||||| | ||| Sbjct 20293 TGAAATTCGCCTGATAAAACTCTCCGATTATAAATGTTGGAAGTGTATGGTTCAAATGAT 20352 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||||||||| || |||||||| || || || |||||||| || || || | | |||| Sbjct 20353 TCATTGTTTCCTAAGATTTGAGCTGTCGATGCGGTCGGCATCGGAGCAACTAGAAGACTA 20412 Query 75842 TTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAT 75901 |||| ||||| | | | || || ||||| | | || ||||||||| ||||| | Sbjct 20413 TTTCGTAGACCGTATTTAGCAATATTTTCTTTCAATTTTTCCCAATCCCAGAGATCGGTA 20472 Query 75902 GGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTATAT 75961 ||| |||||| | ||||||||| ||||| || || || ||||| | ||| Sbjct 20473 GGTTTGCGATCCCACATATCGTATTGGAGAATACCTTTCGATGCGGGAGATCCTTCATAG 20532 Query 75962 GTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAA 76021 ||||| |||| || | | |||||| ||| || || |||||||| || |||||||| Sbjct 20533 GTTTCATAAGGTCCATGGATAGCAGCTAATTCACAGCTAGCCTCTAATGCTCCGTAATAG 20592 Query 76022 ATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGT 76081 |||||||||||||| | |||| | | || ||||||| ||| ||||||||||| | | Sbjct 20593 ATTGTTTCGAAAATTTGTATATTCAATTTTTTCGCTTCATCACTTTCAAAAGGATA-TCT 20651 Query 76082 AAA-AGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTT 76140 || | ||| || ||||| ||||| || || || || || ||||| ||||| |||| | | Sbjct 20652 AAGCAAAATGAACGCATCAGCTAGACCTTGTACGCCGATTCCAATCGGTCTGTGTCGCAT 20711 Query 76141 ATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATT 76200 ||| ||| |||||| || | || |||||||| | ||| || ||||| || | ||| Sbjct 20712 ATTTGAACGACGAGCTTCCGGCAAGGGATAATAATTTACATCAATTATTTTGTTCAAATT 20771 Query 76201 TCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATC-------AAATTTTCCAT 76253 | | | ||||| | | || || | | |||||| | ||||| Sbjct 20772 TTTCGTCATAACTTTGATGATGTTTTTCAACTCTCCAAAATCGTAGGATAGATTTTTTTG 20831 Query 76254 CTATCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCAT-TAGCA 76312 | | ||||| | | || | || |||||||||||||| |||| || | | || Sbjct 20832 AT-TGACAAATTTTGGTAACGCAACCGAAGCTAGATTACAAACAGCTATTTCGTCTGGCG 20890 Query 76313 TTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGT 76372 || ||||| | ||||| ||||| |||||| || ||||| || |||||||||| | Sbjct 20891 ATGA-ATATTCAACAATCTCGGTGCAAAGATTAGAGCATTTGATGGTGCCAAGATTTTTT 20949 Query 76373 TGGTTGCTCTTTTTGTTACA-TGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAAT 76431 || || ||| | ||||| ||| || || || | | || || ||||| ||||| | Sbjct 20950 TGATTAGATTTTCTATTACAATGA-TCTTTGTAGACCATGAATGGTGTTCCGGTTTCCAC 21008 Query 76432 CTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTG---TATCG 76488 ||| | |||| || | ||| | | | |||| ||| |||| ||||| Sbjct 21009 CTGAGCATCGACTATTGCGAACCAAAGTTCACGAGCTGGAATTTG---TTTGCGATATCG 21065 Query 76489 CTTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAA 76548 |||||| | ||||||| ||| | ||| ||||| || ||||||||||| | ||| Sbjct 21066 ATTCTCTTTCTCATATTTCTCATAGAGAGCTTCGAATTCTTCGCCCCAAACATCTTGCAA 21125 Query 76549 ACCAGGACATTCATTCGGACACATCAATGACCACTCACCATC--TTCCTTAACCCGTTTC 76606 ||||||||||| || || |||||||| ||||| | ||||| || | ||| ||||| Sbjct 21126 TCCAGGACATTCTTTGGGGCACATCAACGACCAAACCCCATCGGTTTCGCAAC--GTTTC 21183 Query 76607 ATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTT 76666 || || | ||| |||||||||| ||| || ||||||| || | |||||| Sbjct 21184 ATGAACAAATCCGGTATCCATAATGCATAGAAAAGATCTCTGGCACGTAATTCTTCTGAG 21243 Query 76667 CCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATAT 76726 || ||||| ||| | || || || || | |||||| | |||||| ||||| | |||| Sbjct 21244 CCAGTATTTCGTTTCAAATTTAAAAAGTCGAAAATATCTGCATGCCACGGTTCCAAATAT 21303 Query 76727 ATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTA 76786 || || | | |||| || || |||||||| || ||||| | ||| | || || | || Sbjct 21304 ATTGCGAAAGCACCAGGACGCTTATTACCACCTTGATCGACATAACGAGCGGTATCGTTG 21363 Query 76787 TAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTT 76846 ||||||| |||||| |||| | || || || ||| || || ||| || || | Sbjct 21364 TAAACTCGCAACATCGGAACCAAACCATTTGAATGACCTTTGGTGCCAACTATGTACGAT 21423 Query 76847 CCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGA 76906 ||| ||| |||||| | || | || || || || || || || || || | | Sbjct 21424 CCATTTGCTCGAATACAATGAACATTAAGACCGATGCCACCGGCTGACTTCGATATAATA 21483 Query 76907 GCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGAAG 76965 ||||| ||||||| || || || || || || ||||||||||| ||| || || || Sbjct 21484 GCACATTGTTTCAACGTATCGTAAATACCTTCAATACTATCATCGGCCATCGTCAATAA- 21542 Query 76966 AAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATG 77025 |||||| |||||||||| |||| || || | ||||||||| ||||| || || || Sbjct 21543 AAAACATGAAGACATTTGAGGATGGGTTGTACCAGAATTAAACAAAGTAGGTGAGGCGTG 21602 Query 77026 AGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTG 77085 || || || ||| | |||||| || || || || | | || ||||| || Sbjct 21603 TGTAAAAAGACCTTTAGACATTAGATTATACGTCTCGATGGCCGAATCAATATCTTCTTT 21662 Query 77086 ATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATT 77145 ||| || || | ||||| | ||||||||||||||| |||| ||| ||| || ||| Sbjct 21663 ATGTATACCGATGGCGACTCTCATCAACATATGCTGTGGTCTTTCGACAACTTTCCCATT 21722 Query 77146 TATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 77205 | | || | || | | || ||||| ||||||||||| ||||| ||| || Sbjct 21723 CACTCGTAATAGATAGCTTCGTAATAAGGTTTTGAAACCAAAATAATTGTAACTAAAATC 21782 Query 77206 TCTTTCGTAAATAATAACCGAATTTAG 77232 || || ||||| || | ||||| || Sbjct 21783 TCGATCATAAATTATCGCTGAATTGAG 21809 Score = 134 bits (148), Expect = 2e-26 Identities = 219/315 (70%), Gaps = 3/315 (1%) Strand=Plus/Plus Query 75368 TTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCA 75427 ||||||| ||||| ||||||| | || |||||| | ||||||||||| ||||| || Sbjct 19863 TTATCCACAGTGAATTGAATGGCATTGGCCGCTGGTCTAGTACGTAGATAATACATTCCC 19922 Query 75428 GTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGA 75487 ||||| | ||| | ||| | ||||||||||| ||| | ||||| | | | Sbjct 19923 GTTTTCAAACCATTTCGCCAGCAATAGAAATGCATCGATGTCATTTTGGCCATAGTAGCC 19982 Query 75488 TCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCC 75547 || || ||||||||||||| || ||||||||||||||||| || || | ||| | ||| Sbjct 19983 TCAGCGATATGAATATTCAAAGATTGACTTTGATCGATGAACGCACCACGATCTACAGCC 20042 Query 75548 ATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCA 75607 || | ||| | || ||||| || ||||||| || ||| | | | ||| || || Sbjct 20043 ATCTCACAAATTCTTTTCTGAGGGATCTCCCAAACGGTCTTGTAGAGTGCTTTAATTTCT 20102 Query 75608 TCTGG---AAGATTTGTATTTTGAATGGATCCGCCATCAGATATAATTGTATTCTTGATC 75664 | ||| || || ||||||| || || || | || || || ||| | | || | Sbjct 20103 TTTGGAATAATATCAATATTTTGTATAGAACCTCGATTAGCAATGATTTTCATTTTCAAA 20162 Query 75665 TCATCATTCCACAAT 75679 | ||||| ||||||| Sbjct 20163 TGATCATCCCACAAT 20177 >seq4298 Length=5336 Score = 352 bits (390), Expect = 4e-92 Identities = 621/896 (69%), Gaps = 13/896 (1%) Strand=Plus/Minus Query 46337 TTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATAT 46396 ||||||| ||||| | |||||||| ||||||||||||||||| || ||||| || || | Sbjct 2288 TTTTTTGATATTCTGCAACACGTTTTTCGAAAAAATTAGTTTTACCCTCCAAAGAGATCT 2229 Query 46397 TTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAA-ATCCTAATTCTGAA 46455 |||||| ||| || ||||| | ||| |||| ||| || |||| | || Sbjct 2228 GTTCCATGAAAGAGAATGGATTTTTTGTATTGTAAAATTTGCCAACATCC-AGCTCGACC 2170 Query 46456 ATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATG 46515 | || | ||| || | |||| || ||| |||||| | ||| ||||| || Sbjct 2169 AACAAACGATCAGCGCAGTATTCGATGTACTCACTCATCAAAGTGCTATTGATTCCGATC 2110 Query 46516 AGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATT 46575 | ||| || | || || || | ||| ||||| ||||| ||| || | | | Sbjct 2109 AAGGAGACAGGCAAGGCGTCGGTCAAAAATTCTTGCTCAATCTCGACCGCTTTGGTGACA 2050 Query 46576 ATCG--ATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATG 46633 ||| | | | || | || | ||| ||| | | ||| || | ||||| | Sbjct 2049 ATCTTCAAGAT-CT-TCACCCGAGAAGGTCGATTGACGATGTGTCGGAAAAGCAAACAAG 1992 Query 46634 CAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAG 46693 |||||||||||||||| |||||||| | || ||||| ||| || || | |||| Sbjct 1991 CAAAATCACAATGAAGTCCTTCATCACGCGAGATCAATTCATTACTGAAAGTCAAGCCAG 1932 Query 46694 GCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGC 46753 |||| ||||| || ||||| |||||||| |||||||| || || ||||| || || || | Sbjct 1931 GCATCAGTCCTCGTTTTTTAAGCCAAAAGATAGCCGCAAACGAGCCAGAGAAAAAGATTC 1872 Query 46754 CTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGC---ATCATTATGAATCC 46810 |||| || || ||||| || ||||| | || | | || | ||||| ||| ||| Sbjct 1871 CTTCGACGGCAGCGAACGCAACAAGACGTTCAGCAAAGCTAACTCTATCATCTTGAGTCC 1812 Query 46811 ACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA 46870 | || |||||| | || || |||| |||||||||| ||||| || ||||| || | Sbjct 1811 ATCTGATAGCCCATTTCGCTTTCTTCTCGACACAAGGCAATGTTTGAATGGCATTGAAAA 1752 Query 46871 GAAAGtttttttCATCACTATCTTTAACATATGTATCTATTA--AAAGACTATACATTTC 46928 |||| | | | |||| ||||||| | ||| |||| || | || || ||||||||| Sbjct 1751 GAAAATCTCTCTCATATTTATCTTTTATATAGGTATTGATGAGCAACGA--ATACATTTC 1694 Query 46929 TGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTG 46988 || ||||| ||||| || || ||||||||||| |||||||||| || || | ||||| Sbjct 1693 AGAGTGAATATTTTCGATGGCGATCTGAAATCCATAAAAACATCGAGCCTCTGGTATCTG 1634 Query 46989 TACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAA 47048 || || | || || |||| | ||||||||| |||||||||||||| |||||||| Sbjct 1633 AACATCACGAATGAAACGCTCAGCTAGATTCTCATTAACTATTCCATCACTTGCAGCAAA 1574 Query 47049 AAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATT 47108 ||||| || ||||| || |||| |||||||| || ||| ||||| | || Sbjct 1573 GAATGCTAACACATGAGAGATGAAATGTTTTTCATTCTTATTCAACGAGTTCCAATGATC 1514 Query 47109 GATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATA 47168 | ||| || ||| |||||||| ||||||| || || ||||| ||||| || || Sbjct 1513 TAGATCGCGACTTAAATCGACTTCTTCGACTGTCCAAAACGATGCCTCCGCTTTCTTGTA 1454 Query 47169 CATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTT 47224 ||| | ||| ||||| ||||| || ||||| | |||||||| ||| ||||||| Sbjct 1453 CATCTCCCAGATATCTTTGTATTGAATTGGAAACAAAACAAATCGATTCGGATTTT 1398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712766325715200