Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10]
18,860 sequences; 56,262,437 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq10223 509 2e-139
seq4298 352 4e-92
>seq10223
Length=44262
Score = 509 bits (564), Expect = 2e-139
Identities = 1038/1527 (68%), Gaps = 26/1527 (2%)
Strand=Plus/Plus
Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781
|||||||| || || || ||||| ||| | ||||| || || |||||||| | |||
Sbjct 20293 TGAAATTCGCCTGATAAAACTCTCCGATTATAAATGTTGGAAGTGTATGGTTCAAATGAT 20352
Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841
||||||||||| || |||||||| || || || |||||||| || || || | | ||||
Sbjct 20353 TCATTGTTTCCTAAGATTTGAGCTGTCGATGCGGTCGGCATCGGAGCAACTAGAAGACTA 20412
Query 75842 TTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAT 75901
|||| ||||| | | | || || ||||| | | || ||||||||| ||||| |
Sbjct 20413 TTTCGTAGACCGTATTTAGCAATATTTTCTTTCAATTTTTCCCAATCCCAGAGATCGGTA 20472
Query 75902 GGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTATAT 75961
||| |||||| | ||||||||| ||||| || || || ||||| | |||
Sbjct 20473 GGTTTGCGATCCCACATATCGTATTGGAGAATACCTTTCGATGCGGGAGATCCTTCATAG 20532
Query 75962 GTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAA 76021
||||| |||| || | | |||||| ||| || || |||||||| || ||||||||
Sbjct 20533 GTTTCATAAGGTCCATGGATAGCAGCTAATTCACAGCTAGCCTCTAATGCTCCGTAATAG 20592
Query 76022 ATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGT 76081
|||||||||||||| | |||| | | || ||||||| ||| ||||||||||| | |
Sbjct 20593 ATTGTTTCGAAAATTTGTATATTCAATTTTTTCGCTTCATCACTTTCAAAAGGATA-TCT 20651
Query 76082 AAA-AGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTT 76140
|| | ||| || ||||| ||||| || || || || || ||||| ||||| |||| | |
Sbjct 20652 AAGCAAAATGAACGCATCAGCTAGACCTTGTACGCCGATTCCAATCGGTCTGTGTCGCAT 20711
Query 76141 ATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATT 76200
||| ||| |||||| || | || |||||||| | ||| || ||||| || | |||
Sbjct 20712 ATTTGAACGACGAGCTTCCGGCAAGGGATAATAATTTACATCAATTATTTTGTTCAAATT 20771
Query 76201 TCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATC-------AAATTTTCCAT 76253
| | | ||||| | | || || | | |||||| | |||||
Sbjct 20772 TTTCGTCATAACTTTGATGATGTTTTTCAACTCTCCAAAATCGTAGGATAGATTTTTTTG 20831
Query 76254 CTATCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCAT-TAGCA 76312
| | ||||| | | || | || |||||||||||||| |||| || | | ||
Sbjct 20832 AT-TGACAAATTTTGGTAACGCAACCGAAGCTAGATTACAAACAGCTATTTCGTCTGGCG 20890
Query 76313 TTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGT 76372
|| ||||| | ||||| ||||| |||||| || ||||| || |||||||||| |
Sbjct 20891 ATGA-ATATTCAACAATCTCGGTGCAAAGATTAGAGCATTTGATGGTGCCAAGATTTTTT 20949
Query 76373 TGGTTGCTCTTTTTGTTACA-TGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAAT 76431
|| || ||| | ||||| ||| || || || | | || || ||||| ||||| |
Sbjct 20950 TGATTAGATTTTCTATTACAATGA-TCTTTGTAGACCATGAATGGTGTTCCGGTTTCCAC 21008
Query 76432 CTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTG---TATCG 76488
||| | |||| || | ||| | | | |||| ||| |||| |||||
Sbjct 21009 CTGAGCATCGACTATTGCGAACCAAAGTTCACGAGCTGGAATTTG---TTTGCGATATCG 21065
Query 76489 CTTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAA 76548
|||||| | ||||||| ||| | ||| ||||| || ||||||||||| | |||
Sbjct 21066 ATTCTCTTTCTCATATTTCTCATAGAGAGCTTCGAATTCTTCGCCCCAAACATCTTGCAA 21125
Query 76549 ACCAGGACATTCATTCGGACACATCAATGACCACTCACCATC--TTCCTTAACCCGTTTC 76606
||||||||||| || || |||||||| ||||| | ||||| || | ||| |||||
Sbjct 21126 TCCAGGACATTCTTTGGGGCACATCAACGACCAAACCCCATCGGTTTCGCAAC--GTTTC 21183
Query 76607 ATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTT 76666
|| || | ||| |||||||||| ||| || ||||||| || | ||||||
Sbjct 21184 ATGAACAAATCCGGTATCCATAATGCATAGAAAAGATCTCTGGCACGTAATTCTTCTGAG 21243
Query 76667 CCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATAT 76726
|| ||||| ||| | || || || || | |||||| | |||||| ||||| | ||||
Sbjct 21244 CCAGTATTTCGTTTCAAATTTAAAAAGTCGAAAATATCTGCATGCCACGGTTCCAAATAT 21303
Query 76727 ATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTA 76786
|| || | | |||| || || |||||||| || ||||| | ||| | || || | ||
Sbjct 21304 ATTGCGAAAGCACCAGGACGCTTATTACCACCTTGATCGACATAACGAGCGGTATCGTTG 21363
Query 76787 TAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTT 76846
||||||| |||||| |||| | || || || ||| || || ||| || || |
Sbjct 21364 TAAACTCGCAACATCGGAACCAAACCATTTGAATGACCTTTGGTGCCAACTATGTACGAT 21423
Query 76847 CCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGA 76906
||| ||| |||||| | || | || || || || || || || || || | |
Sbjct 21424 CCATTTGCTCGAATACAATGAACATTAAGACCGATGCCACCGGCTGACTTCGATATAATA 21483
Query 76907 GCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGAAG 76965
||||| ||||||| || || || || || || ||||||||||| ||| || || ||
Sbjct 21484 GCACATTGTTTCAACGTATCGTAAATACCTTCAATACTATCATCGGCCATCGTCAATAA- 21542
Query 76966 AAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATG 77025
|||||| |||||||||| |||| || || | ||||||||| ||||| || || ||
Sbjct 21543 AAAACATGAAGACATTTGAGGATGGGTTGTACCAGAATTAAACAAAGTAGGTGAGGCGTG 21602
Query 77026 AGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTG 77085
|| || || ||| | |||||| || || || || | | || ||||| ||
Sbjct 21603 TGTAAAAAGACCTTTAGACATTAGATTATACGTCTCGATGGCCGAATCAATATCTTCTTT 21662
Query 77086 ATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATT 77145
||| || || | ||||| | ||||||||||||||| |||| ||| ||| || |||
Sbjct 21663 ATGTATACCGATGGCGACTCTCATCAACATATGCTGTGGTCTTTCGACAACTTTCCCATT 21722
Query 77146 TATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 77205
| | || | || | | || ||||| ||||||||||| ||||| ||| ||
Sbjct 21723 CACTCGTAATAGATAGCTTCGTAATAAGGTTTTGAAACCAAAATAATTGTAACTAAAATC 21782
Query 77206 TCTTTCGTAAATAATAACCGAATTTAG 77232
|| || ||||| || | ||||| ||
Sbjct 21783 TCGATCATAAATTATCGCTGAATTGAG 21809
Score = 134 bits (148), Expect = 2e-26
Identities = 219/315 (70%), Gaps = 3/315 (1%)
Strand=Plus/Plus
Query 75368 TTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCA 75427
||||||| ||||| ||||||| | || |||||| | ||||||||||| ||||| ||
Sbjct 19863 TTATCCACAGTGAATTGAATGGCATTGGCCGCTGGTCTAGTACGTAGATAATACATTCCC 19922
Query 75428 GTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGA 75487
||||| | ||| | ||| | ||||||||||| ||| | ||||| | | |
Sbjct 19923 GTTTTCAAACCATTTCGCCAGCAATAGAAATGCATCGATGTCATTTTGGCCATAGTAGCC 19982
Query 75488 TCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCC 75547
|| || ||||||||||||| || ||||||||||||||||| || || | ||| | |||
Sbjct 19983 TCAGCGATATGAATATTCAAAGATTGACTTTGATCGATGAACGCACCACGATCTACAGCC 20042
Query 75548 ATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCA 75607
|| | ||| | || ||||| || ||||||| || ||| | | | ||| || ||
Sbjct 20043 ATCTCACAAATTCTTTTCTGAGGGATCTCCCAAACGGTCTTGTAGAGTGCTTTAATTTCT 20102
Query 75608 TCTGG---AAGATTTGTATTTTGAATGGATCCGCCATCAGATATAATTGTATTCTTGATC 75664
| ||| || || ||||||| || || || | || || || ||| | | || |
Sbjct 20103 TTTGGAATAATATCAATATTTTGTATAGAACCTCGATTAGCAATGATTTTCATTTTCAAA 20162
Query 75665 TCATCATTCCACAAT 75679
| ||||| |||||||
Sbjct 20163 TGATCATCCCACAAT 20177
>seq4298
Length=5336
Score = 352 bits (390), Expect = 4e-92
Identities = 621/896 (69%), Gaps = 13/896 (1%)
Strand=Plus/Minus
Query 46337 TTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATAT 46396
||||||| ||||| | |||||||| ||||||||||||||||| || ||||| || || |
Sbjct 2288 TTTTTTGATATTCTGCAACACGTTTTTCGAAAAAATTAGTTTTACCCTCCAAAGAGATCT 2229
Query 46397 TTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAA-ATCCTAATTCTGAA 46455
|||||| ||| || ||||| | ||| |||| ||| || |||| | ||
Sbjct 2228 GTTCCATGAAAGAGAATGGATTTTTTGTATTGTAAAATTTGCCAACATCC-AGCTCGACC 2170
Query 46456 ATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATG 46515
| || | ||| || | |||| || ||| |||||| | ||| ||||| ||
Sbjct 2169 AACAAACGATCAGCGCAGTATTCGATGTACTCACTCATCAAAGTGCTATTGATTCCGATC 2110
Query 46516 AGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATT 46575
| ||| || | || || || | ||| ||||| ||||| ||| || | | |
Sbjct 2109 AAGGAGACAGGCAAGGCGTCGGTCAAAAATTCTTGCTCAATCTCGACCGCTTTGGTGACA 2050
Query 46576 ATCG--ATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATG 46633
||| | | | || | || | ||| ||| | | ||| || | ||||| |
Sbjct 2049 ATCTTCAAGAT-CT-TCACCCGAGAAGGTCGATTGACGATGTGTCGGAAAAGCAAACAAG 1992
Query 46634 CAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAG 46693
|||||||||||||||| |||||||| | || ||||| ||| || || | ||||
Sbjct 1991 CAAAATCACAATGAAGTCCTTCATCACGCGAGATCAATTCATTACTGAAAGTCAAGCCAG 1932
Query 46694 GCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGC 46753
|||| ||||| || ||||| |||||||| |||||||| || || ||||| || || || |
Sbjct 1931 GCATCAGTCCTCGTTTTTTAAGCCAAAAGATAGCCGCAAACGAGCCAGAGAAAAAGATTC 1872
Query 46754 CTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGC---ATCATTATGAATCC 46810
|||| || || ||||| || ||||| | || | | || | ||||| ||| |||
Sbjct 1871 CTTCGACGGCAGCGAACGCAACAAGACGTTCAGCAAAGCTAACTCTATCATCTTGAGTCC 1812
Query 46811 ACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA 46870
| || |||||| | || || |||| |||||||||| ||||| || ||||| || |
Sbjct 1811 ATCTGATAGCCCATTTCGCTTTCTTCTCGACACAAGGCAATGTTTGAATGGCATTGAAAA 1752
Query 46871 GAAAGtttttttCATCACTATCTTTAACATATGTATCTATTA--AAAGACTATACATTTC 46928
|||| | | | |||| ||||||| | ||| |||| || | || || |||||||||
Sbjct 1751 GAAAATCTCTCTCATATTTATCTTTTATATAGGTATTGATGAGCAACGA--ATACATTTC 1694
Query 46929 TGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTG 46988
|| ||||| ||||| || || ||||||||||| |||||||||| || || | |||||
Sbjct 1693 AGAGTGAATATTTTCGATGGCGATCTGAAATCCATAAAAACATCGAGCCTCTGGTATCTG 1634
Query 46989 TACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAA 47048
|| || | || || |||| | ||||||||| |||||||||||||| ||||||||
Sbjct 1633 AACATCACGAATGAAACGCTCAGCTAGATTCTCATTAACTATTCCATCACTTGCAGCAAA 1574
Query 47049 AAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATT 47108
||||| || ||||| || |||| |||||||| || ||| ||||| | ||
Sbjct 1573 GAATGCTAACACATGAGAGATGAAATGTTTTTCATTCTTATTCAACGAGTTCCAATGATC 1514
Query 47109 GATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATA 47168
| ||| || ||| |||||||| ||||||| || || ||||| ||||| || ||
Sbjct 1513 TAGATCGCGACTTAAATCGACTTCTTCGACTGTCCAAAACGATGCCTCCGCTTTCTTGTA 1454
Query 47169 CATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTT 47224
||| | ||| ||||| ||||| || ||||| | |||||||| ||| |||||||
Sbjct 1453 CATCTCCCAGATATCTTTGTATTGAATTGGAAACAAAACAAATCGATTCGGATTTT 1398
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712766325715200
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