Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq718 102 2e-16 seq135 96.9 8e-15 >seq718 Length=674 Score = 102 bits (112), Expect = 2e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| | ||| || ||||||||||| || |||||| | ||||| |||||||| | Sbjct 249 ATGCAAAGTGGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCATCTTCCAATTG 190 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| || ||||| || | | || || || | | || ||||| || ||||||||||| Sbjct 189 TTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGAATTTT 130 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 ||||||| | || | | || ||| ||| ||||| | |||||| ||||| || || Sbjct 129 AGCTTTGACATTTTCAATCGTATCGGAAGGCTCAACTTCCAAAGTAATGGTTTTTCCAGT 70 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 | ||| |||||||| | |||||| Sbjct 69 CAAAGTTTTCACGAAAATCTGCAT 46 >seq135 Length=1279 Score = 96.9 bits (106), Expect = 8e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || | |||||| ||||||||||| || |||||| | ||||| |||||||| | Sbjct 638 CAAG-TGCAAAGTAGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCATCTTCCA 580 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||| || || || || || | ||||| || | | || ||||| || ||||||| Sbjct 579 ATTGTTTGCCAGCAAAAATCAGACGTTGCTGATCTGGAGGAATACCTTCTTTATCTTGAA 520 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| ||||||| | || | | | || ||| || ||||| | |||||| || || | Sbjct 519 TTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCCACTTCCAAAGTAATGGTCTTTC 460 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | ||| || || || | |||||| Sbjct 459 CAGTCAAAGTTTTGACAAAAATCTGCAT 432 Score = 93.3 bits (102), Expect = 1e-13 Identities = 146/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || | ||| || |||||||| || ||||||||| || ||||| |||||||| | Sbjct 866 CAAG-TGTAAAGTGGATTCTTTTTGAATATTGTAATCGCTCAATGTTCTACCATCTTCCA 808 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||| || || || || | | || || || | | || ||||| || ||||||| Sbjct 807 ATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTATCTTGAA 748 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| ||||||| | || | | | || ||| || ||||| | |||||| ||||| | Sbjct 747 TTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCAACTTCCAAAGTAATGGTTTTTC 688 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | || || ||||| | |||||| Sbjct 687 CAGTCAATGTTTTAACGAAAATCTGCAT 660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153541986415060