Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10]
18,860 sequences; 56,262,437 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq718 102 2e-16
seq135 96.9 8e-15
>seq718
Length=674
Score = 102 bits (112), Expect = 2e-16
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960
||| | ||| || ||||||||||| || |||||| | ||||| |||||||| |
Sbjct 249 ATGCAAAGTGGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCATCTTCCAATTG 190
Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020
||| || ||||| || | | || || || | | || ||||| || |||||||||||
Sbjct 189 TTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGAATTTT 130
Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080
||||||| | || | | || ||| ||| ||||| | |||||| ||||| || ||
Sbjct 129 AGCTTTGACATTTTCAATCGTATCGGAAGGCTCAACTTCCAAAGTAATGGTTTTTCCAGT 70
Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104
| ||| |||||||| | ||||||
Sbjct 69 CAAAGTTTTCACGAAAATCTGCAT 46
>seq135
Length=1279
Score = 96.9 bits (106), Expect = 8e-15
Identities = 147/208 (71%), Gaps = 1/208 (0%)
Strand=Plus/Minus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| || | |||||| ||||||||||| || |||||| | ||||| |||||||| |
Sbjct 638 CAAG-TGCAAAGTAGATTCTTTTTGGATATTATAATCGCTGAGAGTTCGACCATCTTCCA 580
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
||| || || || || || | ||||| || | | || ||||| || |||||||
Sbjct 579 ATTGTTTGCCAGCAAAAATCAGACGTTGCTGATCTGGAGGAATACCTTCTTTATCTTGAA 520
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
|||| ||||||| | || | | | || ||| || ||||| | |||||| || || |
Sbjct 519 TTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCCACTTCCAAAGTAATGGTCTTTC 460
Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| || | ||| || || || | ||||||
Sbjct 459 CAGTCAAAGTTTTGACAAAAATCTGCAT 432
Score = 93.3 bits (102), Expect = 1e-13
Identities = 146/208 (70%), Gaps = 1/208 (0%)
Strand=Plus/Minus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| || | ||| || |||||||| || ||||||||| || ||||| |||||||| |
Sbjct 866 CAAG-TGTAAAGTGGATTCTTTTTGAATATTGTAATCGCTCAATGTTCTACCATCTTCCA 808
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
||| || || || || | | || || || | | || ||||| || |||||||
Sbjct 807 ATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTATCTTGAA 748
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
|||| ||||||| | || | | | || ||| || ||||| | |||||| ||||| |
Sbjct 747 TTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCAACTTCCAAAGTAATGGTTTTTC 688
Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| || | || || ||||| | ||||||
Sbjct 687 CAGTCAATGTTTTAACGAAAATCTGCAT 660
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153541986415060
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |