Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10]
18,860 sequences; 56,262,437 total letters
Query= NC_031761.1
Length=131855
Score E
Sequences producing significant alignments: (Bits) Value
seq135 165 7e-36
seq718 140 3e-28
seq4581 102 7e-17
seq620 93.3 4e-14
>seq135
Length=1279
Score = 165 bits (182), Expect = 7e-36
Identities = 174/229 (76%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159
||||| |||||||||||||| ||||| || || |||||||| ||||| |||||| |
Sbjct 432 ATGCAGATTTTTGTCAAAACTTTGACTGGAAAGACCATTACTTTGGAAGTGGAACCTTCC 491
Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219
||| | ||| | || ||| |||||| || |||||||| |||| |||||
Sbjct 492 GATACCATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAG 551
Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279
||| | || |||| ||| |||||||||||||||||| | |||| | ||||||||||
Sbjct 552 CAACGTCTGATTTTTGCTGGCAAACAATTGGAAGATGGTCGAACTCTCAGCGATTATAAT 611
Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328
|| |||||||||||||| | || || ||||||||||| || |||||||
Sbjct 612 ATCCAAAAAGAATCTACTTTGCACTTGGTGTTGCGTCTCCGTGGTGGCA 660
Score = 149 bits (164), Expect = 5e-31
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159
||||| ||||| || ||||| ||||| || ||||||||||| ||||| ||||| |
Sbjct 660 ATGCAGATTTTCGTTAAAACATTGACTGGAAAAACCATTACTTTGGAAGTTGAACCTTCC 719
Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219
||| | ||| | || ||| |||||| || |||||||| |||| ||||||
Sbjct 720 GATACCATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGATCAA 779
Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279
||| | | |||| ||| |||||||||||||||||| || ||| || |||||| |||
Sbjct 780 CAACGTTTGATTTTTGCTGGCAAACAATTGGAAGATGGTAGAACATTGAGCGATTACAAT 839
Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326
|| ||||||||||| || |||| || || |||||||| || |||||
Sbjct 840 ATTCAAAAAGAATCCACTTTACACTTGGTATTGCGTCTCCGTGGTGG 886
Score = 143 bits (158), Expect = 2e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159
||||| ||||| || ||||| ||||| || ||||| || || ||||| ||||| |
Sbjct 204 ATGCAGATTTTCGTGAAAACATTGACTGGAAAAACAATCACTTTGGAAGTTGAACCTTCC 263
Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219
||| || ||| | || ||| ||||| ||||||||||| |||| ||||||
Sbjct 264 GATACTATTGAAAATGTCAAAGCTAAAATACAGGACAAAGAAGGTATTCCACCAGATCAA 323
Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279
||| | | |||| ||| || ||||||||||||||| | |||| | ||||||||||
Sbjct 324 CAACGTTTGATTTTTGCTGGTAAACAATTGGAAGATGGTCGAACTCTCAGCGATTATAAT 383
Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326
|| ||||||||||| || |||| || ||||||||||| || |||||
Sbjct 384 ATCCAAAAAGAATCCACTTTACACTTGGTGTTGCGTCTCCGGGGTGG 430
Score = 109 bits (120), Expect = 5e-19
Identities = 144/200 (72%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 111127 GGCAAAACCATTACCGTGGAAACGGAACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAA 111186
|| ||||| || || ||||| |||||| |||| | ||| | || ||| |||
Sbjct 3 GGAAAAACTATCACTTTGGAAGTGGAACCTTCCGATACGATTGAAAATGTCAAAGCTAAA 62
Query 111187 ATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAA 111246
||| ||||||||||| |||| ||||||||| | | |||| || || ||||||
Sbjct 63 ATTCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTTTGATTTTCGCTGGTAAACAA 122
Query 111247 TTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTA 111306
||||||||| || ||| || |||||| ||||| || |||||||| || | |||||
Sbjct 123 TTGGAAGATGGTAGAACATTGAGCGATTACAATATCCAGAAAGAATCCACTTTGCATTTG 182
Query 111307 GTGTTGCGTCTGCGCGGTGG 111326
|||||||| || || |||||
Sbjct 183 GTGTTGCGACTCCGTGGTGG 202
Score = 82.4 bits (90), Expect = 6e-11
Identities = 86/113 (76%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 111214 GATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 111273
||||| ||| | | |||| ||| || ||||||||||||||| | ||| || ||||
Sbjct 1053 GATCAGCAACGTTTGATTTTTGCTGGTAAACAATTGGAAGATGGCAGAACATTGAGCGAT 1112
Query 111274 TATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326
|| ||||| || |||||||| || | ||||| |||||||| || || |||||
Sbjct 1113 TACAATATCCAGAAAGAATCCACTTTGCATTTGGTGTTGCGACTCCGTGGTGG 1165
>seq718
Length=674
Score = 140 bits (154), Expect = 3e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159
||||| ||||| || ||||| ||||| || ||||||||||| ||||| || || |
Sbjct 46 ATGCAGATTTTCGTGAAAACTTTGACTGGAAAAACCATTACTTTGGAAGTTGAGCCTTCC 105
Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219
||| | ||| | || ||| |||||| ||||||||||| |||| ||||||
Sbjct 106 GATACGATTGAAAATGTCAAAGCTAAAATTCAAGACAAAGAAGGTATTCCTCCAGATCAA 165
Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279
||| | | |||| || || ||||||||||||||| | |||| | ||||||||||
Sbjct 166 CAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGTCGAACTCTCAGCGATTATAAT 225
Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326
|| ||||||||||| || | ||||| |||||||| || || |||||
Sbjct 226 ATCCAAAAAGAATCCACTTTGCATTTGGTGTTGCGACTCCGTGGTGG 272
Score = 131 bits (144), Expect = 1e-25
Identities = 170/234 (73%), Gaps = 7/234 (3%)
Strand=Plus/Plus
Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159
||||| ||||| || ||||| ||||| || ||||| || || ||||| ||||| |
Sbjct 274 ATGCAGATTTTCGTTAAAACTTTGACTGGAAAAACAATCACTTTGGAAGTTGAACCTTCC 333
Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219
||| | ||| | || ||| ||||| ||||||||||| |||| ||||||
Sbjct 334 GATACAATTGAAAATGTCAAAGCTAAAATACAGGACAAAGAAGGTATTCCACCAGATCAA 393
Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAA-----AACTATGGCCGA 111272
||| | | |||| || |||||||||||||||||| || || |||| | |||
Sbjct 394 CAACGTTTGATTTTCGCTGGCAAACAATTGGAAGATGGTCGAACTCNGAACTCTCAGCGA 453
Query 111273 TTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326
||||||||| |||||||||||||| | || || ||||||||||| || |||||
Sbjct 454 TTATAATATCCAAAAAGAATCTACTTTGCACTTGGTGTTGCGTCTCCGTGGTGG 507
Score = 87.8 bits (96), Expect = 2e-12
Identities = 113/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159
||||||||||| || ||||| ||||| || ||||| || || ||||| || || |
Sbjct 509 ATGCAAATTTTCGTGAAAACTTTGACTGGAAAAACTATCACTTTGGAAGTTGAGCCTTCC 568
Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219
||| || ||| | || ||| |||||| || |||||||| |||| ||||||
Sbjct 569 GATACTATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGATCAA 628
Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT 111255
||| | | |||| || ||||||||||||||||||
Sbjct 629 CAACGTTTGATTTTCGCTGGCAAACAATTGGAAGAT 664
>seq4581
Length=275
Score = 102 bits (112), Expect = 7e-17
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 111193 GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAA 111252
|| |||||||| |||| ||||| ||| | || |||| ||| |||||||||||||||
Sbjct 254 GATAAAGAAGGTATTCCTCCAGATCAGCAACGTCTAATTTTTGCTGGCAAACAATTGGAA 195
Query 111253 GATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTG 111312
||| || ||| || ||||||||| || || |||||||| || | ||||| || |||
Sbjct 194 GATGGTAGAACATTGAGCGATTATAACATTCAGAAAGAATCAACTTTGCATTTGGTATTG 135
Query 111313 CGTCTGCGCGGTGG 111326
||||| || |||||
Sbjct 134 CGTCTTCGTGGTGG 121
>seq620
Length=8710
Score = 93.3 bits (102), Expect = 4e-14
Identities = 74/89 (83%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 111238 GGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACA 111297
|||||||||||||||||| || ||| || |||||| ||||| ||||||||||| ||
Sbjct 8512 GGCAAACAATTGGAAGATGGTAGAACATTGAGCGATTACAATATTCAAAAAGAATCCACT 8571
Query 111298 CTACATTTAGTGTTGCGTCTGCGCGGTGG 111326
|||| |||||||||||||| || |||||
Sbjct 8572 TTACACTTAGTGTTGCGTCTCCGGGGTGG 8600
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421714244059360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |