Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10]
18,860 sequences; 56,262,437 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq135 154 3e-32
seq718 150 4e-31
seq871 98.7 2e-15
seq17802 89.7 1e-12
seq9425 89.7 1e-12
>seq135
Length=1279
Score = 154 bits (170), Expect = 3e-32
Identities = 171/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||| || || || | |||| ||||| ||| |||||||||||| || || ||
Sbjct 431 ACCACCCCGGAGACGCAACACCAAGTGTAAAGTGGATTCTTTTTGGATATTATAATCGCT 372
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || || ||||| || | |||||| || ||||| |||||||||||||| || ||
Sbjct 371 GAGAGTTCGACCATCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGG 312
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|||||| || ||||| || || || ||||| || | || ||||| || |||| ||| ||
Sbjct 311 AATACCTTCTTTGTCCTGTATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGTTCAAC 252
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||| | |||||| || || || ||||| || || ||||| ||||||||
Sbjct 251 TTCCAAAGTGATTGTTTTTCCAGTCAATGTTTTCACGAAAATCTGCAT 204
Score = 150 bits (166), Expect = 4e-31
Identities = 170/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || || | ||||| ||||| ||| ||||||||| || ||||| ||
Sbjct 887 ACCACCACGGAGACGCAATACCAAGTGTAAAGTGGATTCTTTTTGAATATTGTAATCGCT 828
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
| || | ||||| || | |||||| || ||||| |||||||||||||| || ||
Sbjct 827 CAATGTTCTACCATCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGG 768
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|||||| || || ||||| || || ||||| || | || || || || |||| ||| ||
Sbjct 767 AATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCAAC 708
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||| | ||| || || || || ||||| || |||||||| ||||||||
Sbjct 707 TTCCAAAGTAATGGTTTTTCCAGTCAATGTTTTAACGAAAATCTGCAT 660
Score = 134 bits (148), Expect = 3e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|||||||| || || | |||| || || || |||||||||||| || || ||
Sbjct 658 CCACCACGGAGACGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTG 599
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| || || ||||| || | |||||| || ||||| |||| |||||| || || |||
Sbjct 598 AGAGTTCGACCATCTTCCAATTGTTTGCCAGCAAAAATCAGACGTTGCTGATCTGGAGGA 539
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
||||| || || ||||| || || ||||| || | || || || || |||| ||| |||
Sbjct 538 ATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCCACT 479
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| | ||| || ||||| || |||||||| || || || ||||||||
Sbjct 478 TCCAAAGTAATGGTCTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 432
Score = 120 bits (132), Expect = 6e-22
Identities = 147/201 (73%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || || | |||| ||| || ||| |||||| ||||| ||||| ||
Sbjct 203 ACCACCACGGAGTCGCAACACCAAATGCAAAGTGGATTCTTTCTGGATATTGTAATCGCT 144
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
| || | ||||| || | |||||| || || || |||||||||||||| || ||
Sbjct 143 CAATGTTCTACCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGG 84
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|||||| || |||||||| || || ||||| || | || || || || |||| ||| ||
Sbjct 83 AATACCTTCTTTGTCTTGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGTTCCAC 24
Query 283052 TTCGAGAGTGATCGTCTTACC 283072
||| | |||||| || || ||
Sbjct 23 TTCCAAAGTGATAGTTTTTCC 3
Score = 84.2 bits (92), Expect = 5e-11
Identities = 94/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || || | |||| ||| || ||| |||||| ||||| ||||| ||
Sbjct 1166 ACCACCACGGAGTCGCAACACCAAATGCAAAGTGGATTCTTTCTGGATATTGTAATCGCT 1107
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
| || | |||||| || | |||||| || ||||| ||||||||||| || || |||
Sbjct 1106 CAATGTTCTGCCATCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGCTGATCTGGCGG 1047
Query 282992 AATACC 282997
||||||
Sbjct 1046 AATACC 1041
>seq718
Length=674
Score = 150 bits (166), Expect = 4e-31
Identities = 170/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || || | |||| ||| || ||| |||||||||||| || || ||
Sbjct 273 ACCACCACGGAGTCGCAACACCAAATGCAAAGTGGATTCTTTTTGGATATTATAATCGCT 214
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || || ||||| || | |||||| || || || |||||||||||||| || ||
Sbjct 213 GAGAGTTCGACCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGG 154
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|||||| || |||||||| || || ||||| || | || || || || |||| || ||
Sbjct 153 AATACCTTCTTTGTCTTGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGCTCAAC 94
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||| | ||| || || || || |||||||| || ||||| ||||||||
Sbjct 93 TTCCAAAGTAATGGTTTTTCCAGTCAAAGTTTTCACGAAAATCTGCAT 46
Score = 134 bits (148), Expect = 3e-26
Identities = 170/235 (72%), Gaps = 7/235 (3%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || || | |||| || || || |||||||||||| || || ||
Sbjct 508 ACCACCACGGAGACGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCT 449
Query 282932 AAGCGTGCGG-------CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGT 282984
|| || | | ||||| || | |||||| || || || |||||||||||||| |
Sbjct 448 GAGAGTTCNGAGTTCGACCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGAT 389
Query 282985 CACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAG 283044
| |||||||| || ||||| || || || ||||| || | || || || || ||||
Sbjct 388 CTGGTGGAATACCTTCTTTGTCCTGTATTTTAGCTTTGACATTTTCAATTGTATCGGAAG 329
Query 283045 CTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||| ||||| | |||||| || || || |||||||| |||||||| ||||||||
Sbjct 328 GTTCAACTTCCAAAGTGATTGTTTTTCCAGTCAAAGTTTTAACGAAAATCTGCAT 274
Score = 116 bits (128), Expect = 8e-21
Identities = 124/164 (76%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 282936 GTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATA 282995
|| || ||||| || | |||||| || || || |||||||||||||| || ||||||
Sbjct 672 GTTCGACCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATA 613
Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055
|| || || ||||| || || ||||| || | || ||||| || |||| || |||||
Sbjct 612 CCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGCTCAACTTCC 553
Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
| |||||| || || || |||||||| || ||||| || |||||
Sbjct 552 AAAGTGATAGTTTTTCCAGTCAAAGTTTTCACGAAAATTTGCAT 509
>seq871
Length=12966
Score = 98.7 bits (108), Expect = 2e-15
Identities = 287/438 (66%), Gaps = 8/438 (2%)
Strand=Plus/Minus
Query 273513 CCTTTGAAACCTTTGTACCACGGCTTCATGGCTACCATAGGTTCACCCTT---CATCAGT 273569
|||| |||||||| |||||||| ||||| | |||| ||||| || |||||
Sbjct 5420 CCTTGAAAACCTTTATACCACGGATTCAT---TTCCATTGGTTCTTGATTGCGCATCAAA 5364
Query 273570 CGCTCCACATTACCAATAATATCTTTAGGGTTGTAACTCGGAACGTTCGTAGACCAACCG 273629
|| | | ||| | | ||| || |||| | || |||| || || ||| ||||||
Sbjct 5363 CGTTTAATATTTTCTACGATAGCTCTAGGATCATAGTTCGGCACTTTGGTACTCCAACCA 5304
Query 273630 GTGCCAATACCGGAAGAACCATTCACCAGAATACTCGGGATAATTGGGACATAATATTCG 273689
|||||||| || || ||| ||||| | || | || || |||||||||||||||||
Sbjct 5303 GTGCCAATTCCTTCAGCACCGTTCACTAAAACCATGGGAATGATTGGGACATAATATTCA 5244
Query 273690 GGCTCAATTTTATCACCATCGTCGTAAAGGTACTTCAACAAAGCATCATC-CGTATCAAC 273748
|| ||||| | | || || || | ||| || | |||| |||||| || |
Sbjct 5243 GGTTCAATACGAAGATTGTCATCATACATGTAGTTAAGTAAAGGATCATCAAGTGT-TGG 5185
Query 273749 GAAAACCTTTCGCGTCTGAGGATTCAGTTTCGTGAAAATGTACCTGGCACTCGCATGGTC 273808
|||| |||| | | ||| | || | |||||||| || | | || ||| ||
Sbjct 5184 AAAAAGTTTTCTAGCCAAGGGACTGAGCATGGTGAAAATATAACGAGGGCTTGCAGCATC 5125
Query 273809 CTTGCCACCTTGCAGCCTCGAACCAAACTGACCCTCGGGCAGTAGCCAGTTTATGTTGTT 273868
||||| ||||| || | | ||| || ||||| || | | | || || |||||
Sbjct 5124 TTTGCCCCCTTGAAGTCGAGTACCGAATTGACCTAAAGGTTGCAATAAATTGATATTGTT 5065
Query 273869 GCTACCGACGTAATCCTGAGCCATATTCACGATAGTCCCCTGAAGGGATACCTCGCCGTG 273928
||| ||||| ||| ||||| | ||| | || || | | || | ||||| ||
Sbjct 5064 GCTCCCGACAAAATTTTGAGCTAAATTAATTATGGTTGACATTAAAGACATTTCGCCATG 5005
Query 273929 GTGATAGGCGCTGTGTTC 273946
|||||||||||| ||||
Sbjct 5004 GTGATAGGCGCTAAGTTC 4987
>seq17802
Length=17061
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 4628 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 4570
>seq9425
Length=8889
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 2450 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 2392
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046486262014440
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