Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq135 154 3e-32 seq718 150 4e-31 seq871 98.7 2e-15 seq17802 89.7 1e-12 seq9425 89.7 1e-12 >seq135 Length=1279 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || || | |||| ||||| ||| |||||||||||| || || || Sbjct 431 ACCACCCCGGAGACGCAACACCAAGTGTAAAGTGGATTCTTTTTGGATATTATAATCGCT 372 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || ||||| || | |||||| || ||||| |||||||||||||| || || Sbjct 371 GAGAGTTCGACCATCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGG 312 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| || ||||| || || || ||||| || | || ||||| || |||| ||| || Sbjct 311 AATACCTTCTTTGTCCTGTATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGTTCAAC 252 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| | |||||| || || || ||||| || || ||||| |||||||| Sbjct 251 TTCCAAAGTGATTGTTTTTCCAGTCAATGTTTTCACGAAAATCTGCAT 204 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || | ||||| ||||| ||| ||||||||| || ||||| || Sbjct 887 ACCACCACGGAGACGCAATACCAAGTGTAAAGTGGATTCTTTTTGAATATTGTAATCGCT 828 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || | ||||| || | |||||| || ||||| |||||||||||||| || || Sbjct 827 CAATGTTCTACCATCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGG 768 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| || || ||||| || || ||||| || | || || || || |||| ||| || Sbjct 767 AATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCAAC 708 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| | ||| || || || || ||||| || |||||||| |||||||| Sbjct 707 TTCCAAAGTAATGGTTTTTCCAGTCAATGTTTTAACGAAAATCTGCAT 660 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || | |||| || || || |||||||||||| || || || Sbjct 658 CCACCACGGAGACGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCTG 599 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || ||||| || | |||||| || ||||| |||| |||||| || || ||| Sbjct 598 AGAGTTCGACCATCTTCCAATTGTTTGCCAGCAAAAATCAGACGTTGCTGATCTGGAGGA 539 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||| || || ||||| || || ||||| || | || || || || |||| ||| ||| Sbjct 538 ATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCGGAAGGTTCCACT 479 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||| || ||||| || |||||||| || || || |||||||| Sbjct 478 TCCAAAGTAATGGTCTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 432 Score = 120 bits (132), Expect = 6e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || | |||| ||| || ||| |||||| ||||| ||||| || Sbjct 203 ACCACCACGGAGTCGCAACACCAAATGCAAAGTGGATTCTTTCTGGATATTGTAATCGCT 144 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || | ||||| || | |||||| || || || |||||||||||||| || || Sbjct 143 CAATGTTCTACCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGG 84 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| || |||||||| || || ||||| || | || || || || |||| ||| || Sbjct 83 AATACCTTCTTTGTCTTGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGTTCCAC 24 Query 283052 TTCGAGAGTGATCGTCTTACC 283072 ||| | |||||| || || || Sbjct 23 TTCCAAAGTGATAGTTTTTCC 3 Score = 84.2 bits (92), Expect = 5e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || | |||| ||| || ||| |||||| ||||| ||||| || Sbjct 1166 ACCACCACGGAGTCGCAACACCAAATGCAAAGTGGATTCTTTCTGGATATTGTAATCGCT 1107 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || | |||||| || | |||||| || ||||| ||||||||||| || || ||| Sbjct 1106 CAATGTTCTGCCATCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGCTGATCTGGCGG 1047 Query 282992 AATACC 282997 |||||| Sbjct 1046 AATACC 1041 >seq718 Length=674 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || | |||| ||| || ||| |||||||||||| || || || Sbjct 273 ACCACCACGGAGTCGCAACACCAAATGCAAAGTGGATTCTTTTTGGATATTATAATCGCT 214 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || ||||| || | |||||| || || || |||||||||||||| || || Sbjct 213 GAGAGTTCGACCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGG 154 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| || |||||||| || || ||||| || | || || || || |||| || || Sbjct 153 AATACCTTCTTTGTCTTGAATTTTAGCTTTGACATTTTCAATCGTATCGGAAGGCTCAAC 94 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| | ||| || || || || |||||||| || ||||| |||||||| Sbjct 93 TTCCAAAGTAATGGTTTTTCCAGTCAAAGTTTTCACGAAAATCTGCAT 46 Score = 134 bits (148), Expect = 3e-26 Identities = 170/235 (72%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || | |||| || || || |||||||||||| || || || Sbjct 508 ACCACCACGGAGACGCAACACCAAGTGCAAAGTAGATTCTTTTTGGATATTATAATCGCT 449 Query 282932 AAGCGTGCGG-------CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGT 282984 || || | | ||||| || | |||||| || || || |||||||||||||| | Sbjct 448 GAGAGTTCNGAGTTCGACCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGAT 389 Query 282985 CACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAG 283044 | |||||||| || ||||| || || || ||||| || | || || || || |||| Sbjct 388 CTGGTGGAATACCTTCTTTGTCCTGTATTTTAGCTTTGACATTTTCAATTGTATCGGAAG 329 Query 283045 CTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| ||||| | |||||| || || || |||||||| |||||||| |||||||| Sbjct 328 GTTCAACTTCCAAAGTGATTGTTTTTCCAGTCAAAGTTTTAACGAAAATCTGCAT 274 Score = 116 bits (128), Expect = 8e-21 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 282936 GTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATA 282995 || || ||||| || | |||||| || || || |||||||||||||| || |||||| Sbjct 672 GTTCGACCATCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATA 613 Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 || || || ||||| || || ||||| || | || ||||| || |||| || ||||| Sbjct 612 CCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATAGTATCGGAAGGCTCAACTTCC 553 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | |||||| || || || |||||||| || ||||| || ||||| Sbjct 552 AAAGTGATAGTTTTTCCAGTCAAAGTTTTCACGAAAATTTGCAT 509 >seq871 Length=12966 Score = 98.7 bits (108), Expect = 2e-15 Identities = 287/438 (66%), Gaps = 8/438 (2%) Strand=Plus/Minus Query 273513 CCTTTGAAACCTTTGTACCACGGCTTCATGGCTACCATAGGTTCACCCTT---CATCAGT 273569 |||| |||||||| |||||||| ||||| | |||| ||||| || ||||| Sbjct 5420 CCTTGAAAACCTTTATACCACGGATTCAT---TTCCATTGGTTCTTGATTGCGCATCAAA 5364 Query 273570 CGCTCCACATTACCAATAATATCTTTAGGGTTGTAACTCGGAACGTTCGTAGACCAACCG 273629 || | | ||| | | ||| || |||| | || |||| || || ||| |||||| Sbjct 5363 CGTTTAATATTTTCTACGATAGCTCTAGGATCATAGTTCGGCACTTTGGTACTCCAACCA 5304 Query 273630 GTGCCAATACCGGAAGAACCATTCACCAGAATACTCGGGATAATTGGGACATAATATTCG 273689 |||||||| || || ||| ||||| | || | || || ||||||||||||||||| Sbjct 5303 GTGCCAATTCCTTCAGCACCGTTCACTAAAACCATGGGAATGATTGGGACATAATATTCA 5244 Query 273690 GGCTCAATTTTATCACCATCGTCGTAAAGGTACTTCAACAAAGCATCATC-CGTATCAAC 273748 || ||||| | | || || || | ||| || | |||| |||||| || | Sbjct 5243 GGTTCAATACGAAGATTGTCATCATACATGTAGTTAAGTAAAGGATCATCAAGTGT-TGG 5185 Query 273749 GAAAACCTTTCGCGTCTGAGGATTCAGTTTCGTGAAAATGTACCTGGCACTCGCATGGTC 273808 |||| |||| | | ||| | || | |||||||| || | | || ||| || Sbjct 5184 AAAAAGTTTTCTAGCCAAGGGACTGAGCATGGTGAAAATATAACGAGGGCTTGCAGCATC 5125 Query 273809 CTTGCCACCTTGCAGCCTCGAACCAAACTGACCCTCGGGCAGTAGCCAGTTTATGTTGTT 273868 ||||| ||||| || | | ||| || ||||| || | | | || || ||||| Sbjct 5124 TTTGCCCCCTTGAAGTCGAGTACCGAATTGACCTAAAGGTTGCAATAAATTGATATTGTT 5065 Query 273869 GCTACCGACGTAATCCTGAGCCATATTCACGATAGTCCCCTGAAGGGATACCTCGCCGTG 273928 ||| ||||| ||| ||||| | ||| | || || | | || | ||||| || Sbjct 5064 GCTCCCGACAAAATTTTGAGCTAAATTAATTATGGTTGACATTAAAGACATTTCGCCATG 5005 Query 273929 GTGATAGGCGCTGTGTTC 273946 |||||||||||| |||| Sbjct 5004 GTGATAGGCGCTAAGTTC 4987 >seq17802 Length=17061 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 4628 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 4570 >seq9425 Length=8889 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 2450 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 2392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046486262014440