Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq4298 288 1e-72 >seq4298 Length=5336 Score = 288 bits (318), Expect = 1e-72 Identities = 419/592 (71%), Gaps = 0/592 (0%) Strand=Plus/Minus Query 23506 AAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTT 23565 ||||| |||||||||||||| || |||||||| | |||||||||||| || || Sbjct 1998 AAACAAGCAAAATCACAATGAAGTCCTTCATCACGCGAGATCAATTCATTACTGAAAGTC 1939 Query 23566 AATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAG 23625 || || ||||| | |||||||||||||| |||||| || || ||||| || || || || Sbjct 1938 AAGCCAGGCATCAGTCCTCGTTTTTTAAGCCAAAAGATAGCCGCAAACGAGCCAGAGAAA 1879 Query 23626 AAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCA 23685 || || || || || || || || || ||||||||| | |||| | | ||| ||| Sbjct 1878 AAGATTCCTTCGACGGCAGCGAACGCAACAAGACGTTCAGCAAAGCTAACTCTATCATCT 1819 Query 23686 GAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCT 23745 | ||||| | | | ||| || || ||| | ||||| | ||||| ||| || Sbjct 1818 TGAGTCCATCTGATAGCCCATTTCGCTTTCTTCTCGACACAAGGCAATGTTTGAATGGCA 1759 Query 23746 TTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATAC 23805 || || |||||| | | || | |||||| ||||||| |||| || || || |||| Sbjct 1758 TTGAAAAGAAAATCTCTCTCATATTTATCTTTTATATAGGTATTGATGAGCAACGAATAC 1699 Query 23806 ATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGAC 23865 |||||||| ||||||||||| || || |||||||| ||||||||||||| ||| || | Sbjct 1698 ATTTCAGAGTGAATATTTTCGATGGCGATCTGAAATCCATAAAAACATCGAGCCTCTGGT 1639 Query 23866 AATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCA 23925 | ||||||||| || || | | ||||| ||| || ||||| || |||||||| ||| Sbjct 1638 ATCTGAACATCACGAATGAAACGCTCAGCTAGATTCTCATTAACTATTCCATCACTTGCA 1579 Query 23926 GCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTTCCAA 23985 |||||||| || | |||| || |||||| |||||| | || |||||| Sbjct 1578 GCAAAGAATGCTAACACATGAGAGATGAAATGTTTTTCATTCTTATTCAACGAGTTCCAA 1519 Query 23986 TCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCACGC 24045 | || | ||| |||||| ||||| || ||||||||||| |||| || | Sbjct 1518 TGATCTAGATCGCGACTTAAATCGACTTCTTCGACTGTCCAAAACGATGCCTCCGCTTTC 1459 Query 24046 TTATACATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGAATCTAT 24097 || ||||| ||| ||||| || | ||| |||||||| | || |||| || Sbjct 1458 TTGTACATCTCCCAGATATCTTTGTATTGAATTGGAAACAAAACAAATCGAT 1407 Score = 89.7 bits (98), Expect = 5e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 23209 ACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAAT 23268 ||||| ||||||||||||| |||||||| ||||||||||||| || |||||||| || Sbjct 2295 ACACCACTTTTTTGATATTCTGCAACACGTTTTTCGAAAAAATTAGTTTTACCCTCCAAA 2236 Query 23269 GATATATTTTCCATAAAATCAAATGGATT 23297 || || | |||||| ||| |||||||| Sbjct 2235 GAGATCTGTTCCATGAAAGAGAATGGATT 2207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521365059204000