Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq8097 98.7 1e-15 >seq8097 Length=7218 Score = 98.7 bits (108), Expect = 1e-15 Identities = 213/315 (68%), Gaps = 4/315 (1%) Strand=Plus/Minus Query 155734 TCAACGCCGTCGATTGAGCGGCGCGTACCAACCCTTCCAATTCAGCGCCGCTGTAATTTT 155793 ||| |||||| ||||||||||| || ||||| ||||| | || || ||| |||| | Sbjct 4670 TCATCGCCGTGGATTGAGCGGCACGAACCAAACCTTCAATCTCTGCACCGGAAAAATTCT 4611 Query 155794 TAGTTTCAACGGCTATTTTATTTAAGTCTACGTCGGAAGCTAATATGTTGTGAGATTTC- 155852 | || | | |||| || || | || || || | ||| | | | || ||| |||| Sbjct 4610 TGGTCAAAGCAGCTAATTCTTTGATATCGACATCAGGAGCGA-TCTTTT-TGAACTTTCT 4553 Query 155853 -ATTTTAGCAACGTGCACCTTTAAAATTTGAAGACGCCCCTTTTCATCGGGTAATCCAAT 155911 || || | || | || | ||||||| | || | ||||| || | | ||| Sbjct 4552 CATCTTGCTAGTATGAATGTTAAGGATTTGAATTCTGCCATCTTCATTTGGAAGGCTAAT 4493 Query 155912 TTCTATCTTCAATTCCAACCGCCCAGGTCTTAATAATGCTTCGTCAATTAAGTCGGGTCT 155971 ||| |||| | || || | ||||||| | || ||||| ||||| | || | || Sbjct 4492 TTCCATCTGAACCTCTAATCTACCAGGTCGAAGTAGAGCTTCATCAATCATATCTCGCCT 4433 Query 155972 GTTGGTCATACCTATGATTAAAATGTTGTTTAAAGATTCTACACCGTCTATTTTAGACAA 156031 ||| ||||| || || | ||||| |||||||| || ||||| || || ||||| | ||| Sbjct 4432 GTTTGTCATTCCAATTACCAAAATATTGTTTAACGAATCTACGCCATCAATTTTGGCCAA 4373 Query 156032 TAATTGATTGACTAC 156046 ||||||||| || || Sbjct 4372 TAATTGATTAACGAC 4358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 666917937021600